SENP1

General Information

Gene Name       : SENP1
Gene ID             : ENSG00000079387.13
Essential Gene : No

Functions

Localization

Domains (AlphaFold: SENP1)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878SENP1ENSG00000079387.1325.1523.6924.42ENCSR000AEF
HepG2SENP1ENSG00000079387.139.0714.8211.95ENCSR985KAT
K562SENP1ENSG00000079387.1324.7925.3125.05ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for SENP1 is not avaliable on ENCORE database.



Proteins bound to RNA
  • SENP1 RNA is bound by 15 proteins.  







eCLIP assay for SENP1 is not avaliable on ENCORE database.





15 proteins are bound to SENP1 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr124843910748439166-3'-UTR,CDS,intron-Distal3.322814.31744K562YBX3
chr124843862248438686-3'-UTR,intron-Distal3.5975519.97474K562AGGF1
chr124843862948438697-3'-UTR,intron-Distal4.191383.31153K562GTF2F1
chr124843845848438486-3'-UTR,intron-Distal3.553913.66308K562UPF1
chr124843854348438615-3'-UTR,intron-Distal3.8633311.02781K562HNRNPL
chr124843850248438538-3'-UTR,intron-Distal3.446185.74368K562AGGF1
chr124843800648438106-3'-UTR,intron-Distal3.473189.14812K562UPF1
chr124843861548438736-3'-UTR,intron-Distal3.6395518.35881K562HNRNPL
chr124843854048438579-3'-UTR,intron-Distal3.997477.28394K562AGGF1
chr124843765048437707-3'-UTR,intron-Distal4.600166.16999K562TIA1
chr124843860748438736-3'-UTR,intron-Distal4.200227.92375HepG2HNRNPL
chr124843793648438006-3'-UTR,intron-Distal3.982957.87505K562UPF1
chr124843868648438740-3'-UTR,intron-Distal3.748099.41620K562AGGF1
chr124843823248438260-3'-UTR,intron-Distal3.818514.87320K562UPF1
chr124843896048439003-3'-UTR,intron-Distal3.969024.07825K562YBX3
chr124843739048437442-3'-UTR,intron-Distal4.204909.73442K562PTBP1
chr124843857948438622-3'-UTR,intron-Distal4.2832419.09708K562AGGF1
chr124849950048499578-5'-UTR,intron-Distal3.450405.44096K562DDX3X
chr124849524648495326-5'-UTR,CDS,intron-Distal,intron-Proximal5.8533411.02807K562AQR
chr124847739148477479-5'-UTR,CDS,intron-Distal,intron-Proximal3.207153.26789K562YBX3
chr124848266048482744-5'-UTR,CDS,intron-Distal,intron-Proximal3.652714.53184K562IGF2BP1
chr124849911048499238-5'-UTR,CDS,intron-Distal3.684887.41728K562PRPF8
chr124846820348468276-5'-UTR,CDS,intron-Distal3.600234.53184K562IGF2BP1
chr124849917448499254-5'-UTR,CDS,intron-Distal3.203683.65452K562BUD13
chr124848258348482635-5'-UTR,CDS,intron-Distal,intron-Proximal3.966935.23915K562IGF2BP1
chr124849917248499242-5'-UTR,CDS,intron-Distal6.5935817.53326K562AQR
chr124849185448491922-5'-UTR,CDS,intron-Distal,intron-Proximal3.164683.26275K562BUD13
chr124846810548468138-5'-UTR,CDS,intron-Distal,intron-Proximal4.207983.98716K562IGF2BP1
chr124846827648468350-5'-UTR,CDS,intron-Distal4.904136.30939K562IGF2BP1
chr124849012348490205-CDS,intron-Distal,intron-Proximal3.843995.00403K562IGF2BP1
chr124849823948498322-intron-Distal3.839983.29248HepG2SUGP2
chr124849748648497582-intron-Distal4.829884.38664K562QKI
chr124849078748490871-intron-Distal3.720303.02234K562KHSRP
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for SENP1 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for SENP1 is not available on ENCORE database.

  • 67 RBPs can affect the levels of SENP1.  








The Knockdown/knockout RNA-Seq assay for SENP1 is not available on ENCORE database.





67 RBPs can affect the gene expression of SENP1 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
SENP1ENSG00000079387.9388.99530549.77390-0.499102.584402.06910HepG2AKAP1
SENP1ENSG00000079387.9274.04240463.23540-0.757308.176506.94350HepG2AKAP8L
SENP1ENSG00000079387.9311.30260487.22810-0.646303.466102.41810HepG2BCCIP
SENP1ENSG00000079387.9503.13550677.10150-0.428403.339702.50240HepG2CALR
SENP1ENSG00000079387.9507.54100703.89220-0.471802.688102.00900HepG2CPSF6
SENP1ENSG00000079387.9454.22700562.12390-0.307501.948601.39080HepG2CELF1
SENP1ENSG00000079387.9713.61070526.627400.438302.634702.02260HepG2DDX3X
SENP1ENSG00000079387.9270.33020479.03280-0.825405.300804.27290HepG2DDX55
SENP1ENSG00000079387.9234.66350452.41770-0.947106.980206.03610HepG2DDX6
SENP1ENSG00000079387.9296.81680422.89480-0.510704.429603.63880HepG2DNAJC2
SENP1ENSG00000079387.9250.51110353.85360-0.498302.515401.45690HepG2EFTUD2
SENP1ENSG00000079387.9241.56300434.88650-0.848206.183005.31540HepG2EIF2S1
SENP1ENSG00000079387.9327.50150480.58450-0.553303.136102.45660HepG2EIF4A3
SENP1ENSG00000079387.9313.14980467.94740-0.579502.772502.08320HepG2EIF4B
SENP1ENSG00000079387.9456.98830596.29600-0.383902.882502.03110HepG2EIF4G1
SENP1ENSG00000079387.9436.43540571.21000-0.388302.237301.49980HepG2EIF4G2
SENP1ENSG00000079387.9621.60550817.24080-0.394803.845903.15710HepG2ETF1
SENP1ENSG00000079387.9190.93970307.94310-0.689504.641703.09150HepG2FAM120A
SENP1ENSG00000079387.9250.67030408.42690-0.704304.321602.93950HepG2FASTKD2
SENP1ENSG00000079387.9325.71960442.33700-0.441502.392701.44990HepG2GNB2L1
SENP1ENSG00000079387.9387.92700550.55530-0.505104.888804.01190HepG2HNRNPL
SENP1ENSG00000079387.9398.59030486.16400-0.286502.103301.45450HepG2ILF2
SENP1ENSG00000079387.9582.24770830.98020-0.513203.178602.28600HepG2LARP4
SENP1ENSG00000079387.9329.88100454.99710-0.463902.887201.64510HepG2LIN28B
SENP1ENSG00000079387.9453.23270599.32260-0.403102.991502.19880HepG2NOL12
SENP1ENSG00000079387.9462.69920675.18840-0.545203.414502.58320HepG2NSUN2
SENP1ENSG00000079387.9226.52660477.35430-1.075408.137206.45330HepG2PCBP2
SENP1ENSG00000079387.9320.94880424.50650-0.403402.624901.90570HepG2PPIL4
SENP1ENSG00000079387.9265.71790369.60970-0.476102.017301.32380HepG2PRPF8
SENP1ENSG00000079387.9571.06570451.437900.339002.632802.09700HepG2PTBP1
SENP1ENSG00000079387.9734.09120488.898400.586304.294803.54150HepG2QKI
SENP1ENSG00000079387.9697.03600502.399200.472304.488803.83030HepG2NELFE
SENP1ENSG00000079387.9521.39270677.89970-0.378702.432401.78530HepG2RPLP0
SENP1ENSG00000079387.9221.98280365.62780-0.719903.749302.85190HepG2RRP9
SENP1ENSG00000079387.9578.01050469.988300.298401.914101.40720HepG2SF3B4
SENP1ENSG00000079387.9421.93680548.58040-0.378702.997702.27060HepG2SLBP
SENP1ENSG00000079387.9558.34270838.71870-0.587002.454301.71910HepG2SNRNP70
SENP1ENSG00000079387.9496.96850771.48930-0.634508.936608.17720HepG2SRFBP1
SENP1ENSG00000079387.9760.42180490.572900.632207.971407.26520HepG2SRSF1
SENP1ENSG00000079387.9378.67820564.88550-0.577005.752204.89730HepG2SRSF5
SENP1ENSG00000079387.9493.17270618.29400-0.326202.353001.70750HepG2SRSF7
SENP1ENSG00000079387.9293.43470481.61930-0.714903.856402.41790HepG2STAU1
SENP1ENSG00000079387.9313.21940486.87830-0.636403.965202.84990HepG2SUPT6H
SENP1ENSG00000079387.9347.64920476.89140-0.456001.957101.37370HepG2SUPV3L1
SENP1ENSG00000079387.9316.91810466.60790-0.558105.214304.48980HepG2TRIM56
SENP1ENSG00000079387.9865.83970616.685000.489504.060103.30470HepG2U2AF1
SENP1ENSG00000079387.9161.49670281.72920-0.802804.660903.67180HepG2UCHL5
SENP1ENSG00000079387.9516.92000667.50880-0.368803.004401.91860HepG2UTP18
SENP1ENSG00000079387.9481.83400714.24270-0.567907.793206.99640HepG2ZNF622
SENP1ENSG00000079387.91541.502602171.10610-0.494105.766004.80280K562AKAP8L
SENP1ENSG00000079387.91578.158702268.42080-0.523402.894901.80260K562CNOT7
SENP1ENSG00000079387.91771.061702222.73250-0.327703.361502.49460K562CPSF6
SENP1ENSG00000079387.93111.821302538.020900.294004.363103.57060K562DDX47
SENP1ENSG00000079387.9807.636201114.68170-0.464903.668702.60570K562EFTUD2
SENP1ENSG00000079387.91332.10030822.828100.694903.159802.07640K562EIF3A
SENP1ENSG00000079387.9830.679101117.52270-0.427902.895101.43580K562GEMIN5
SENP1ENSG00000079387.91700.841002122.13910-0.319302.840202.03490K562GPKOW
SENP1ENSG00000079387.91571.390502292.86400-0.545107.479006.22160K562GRSF1
SENP1ENSG00000079387.91589.924102071.45450-0.381703.783202.74750K562METAP2
SENP1ENSG00000079387.91402.438101851.40340-0.400706.697205.48930K562MTPAP
SENP1ENSG00000079387.91718.766302057.15490-0.259304.382203.46670K562NSUN2
SENP1ENSG00000079387.91000.992501352.42310-0.434104.194802.98440K562PCBP2
SENP1ENSG00000079387.91170.111101565.49800-0.420003.287201.57650K562PKM
SENP1ENSG00000079387.91927.893302677.72490-0.474005.246304.05880K562PPIG
SENP1ENSG00000079387.9928.714701201.70940-0.371803.028302.07700K562PSIP1
SENP1ENSG00000079387.92746.337903241.74780-0.239302.559701.63440K562PUM2
SENP1ENSG00000079387.91784.838002153.20290-0.270701.784201.32910K562PUS1
SENP1ENSG00000079387.91737.910401379.903700.332702.943201.82690K562SAFB
SENP1ENSG00000079387.91901.226401426.632700.414203.799702.08610K562SDAD1
SENP1ENSG00000079387.91605.144602029.76870-0.338604.331603.32840K562SF3A3
SENP1ENSG00000079387.92091.570701553.315300.429104.173403.15930K562SYNCRIP
SENP1ENSG00000079387.91104.866501465.20300-0.407203.373602.58970K562TARDBP
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for SENP1 is not available on ENCORE database.





10 RBPs can affect the splicing of SENP1 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SESENP1ENSG00000079387.9chr12-4849525148495299484917764849190748499810485000910.139000.001100.02256includedK562SRSF1
SESENP1ENSG00000079387.9chr12-484952514849529948491776484919074849981048500091-0.321000.000000.00007excludedK562AKAP8L
SESENP1ENSG00000079387.9chr12-4848294548483076484825834848274348490125484902100.062000.007040.06150includedK562AQR
SESENP1ENSG00000079387.9chr12-484952514849529948491776484919074849981048500091-0.213000.001870.02842excludedK562PUS1
SESENP1ENSG00000079387.9chr12-484952514849529948491776484919074849981048500091-0.247000.000180.04452excludedK562SBDS
SESENP1ENSG00000079387.9chr12-484952514849529948491776484919074849981048500091-0.177000.002750.07194excludedK562UTP18
SESENP1ENSG00000079387.9chr12-484952514849529948491776484919074849981048500091-0.175000.002310.05255excludedK562AGGF1
SESENP1ENSG00000079387.9chr12-484952514849529948491776484919074849981048499849-0.254000.002310.07604excludedK562SF3B1
SESENP1ENSG00000079387.9chr12-4849284448492937484917764849190748499810484998350.661000.000170.00428includedK562HNRNPC
A3SSSENP1ENSG00000079387.9chr12-4843910448439341484391044843916748440138484402340.060000.000000.00000longerK562AQR
A3SSSENP1ENSG00000079387.9chr12-4844178348441885484417834844186348442711484429150.066000.000280.00221longerK562AQR
A3SSSENP1ENSG00000079387.9chr12-4849012548490232484901254849021048491776484918170.068000.000090.00078longerK562AQR
A3SSSENP1ENSG00000079387.9chr12-4849177648491920484917764849190748495251484952990.067000.003590.02161longerK562AQR
A3SSSENP1ENSG00000079387.9chr12-4845884748459016484588474845900348459378484594630.088000.000010.00009longerK562AQR
MXESENP1ENSG00000079387.9chr12-48491776484919074849525148495299484901254849021048499810485000910.103000.000130.001541includedK562AQR
MXESENP1ENSG00000079387.9chr12-48482583484827434849525148495299484773734847754548499810485000910.077000.014840.086901includedK562AQR
MXESENP1ENSG00000079387.9chr12-48490125484902104849177648491920484825834848274348495251484952990.101000.000120.001451includedK562AQR
MXESENP1ENSG00000079387.9chr12-4849012548490210484917764849190748482945484830764849525148495299-0.103000.000370.003802includedK562AQR
MXESENP1ENSG00000079387.9chr12-48495251484952994849981048499939484917764849190748500050485000910.133000.001020.055051includedK562UTP18
MXESENP1ENSG00000079387.9chr12-4849012548490210484917764849190748482945484830764849525148495299-0.113000.001840.064332includedK562HNRNPU

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for SENP1 is not avaliable on ENCORE database.