RPGRIP1L

General Information

Gene Name       : RPGRIP1L
Gene ID             : ENSG00000103494.13
Essential Gene : No

Functions

Localization

Domains (AlphaFold: RPGRIP1L)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878RPGRIP1LENSG00000103494.134.433.564.00ENCSR000AEF
HepG2RPGRIP1LENSG00000103494.136.218.767.48ENCSR985KAT
K562RPGRIP1LENSG00000103494.133.373.303.33ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for RPGRIP1L is not avaliable on ENCORE database.



Proteins bound to RNA
  • RPGRIP1L RNA is bound by 2 proteins.  







eCLIP assay for RPGRIP1L is not avaliable on ENCORE database.





2 proteins are bound to RPGRIP1L RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr165373758153737678-5'-UTR,intron-Distal5.345625.58036HepG2EFTUD2
chr165369881353698922-CDS,intron-Distal,intron-Proximal4.676664.70478HepG2BCLAF1
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for RPGRIP1L is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for RPGRIP1L is not available on ENCORE database.

  • 73 RBPs can affect the levels of RPGRIP1L.  








The Knockdown/knockout RNA-Seq assay for RPGRIP1L is not available on ENCORE database.





73 RBPs can affect the gene expression of RPGRIP1L :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
RPGRIP1LENSG00000103494.8629.17950292.400301.1054010.083909.13450HepG2AKAP1
RPGRIP1LENSG00000103494.8241.66060327.05720-0.436602.598701.85220HepG2AKAP8L
RPGRIP1LENSG00000103494.8468.53050686.52050-0.551204.373903.64170HepG2BOP1
RPGRIP1LENSG00000103494.8409.86630630.27020-0.620804.791503.90770HepG2CPSF6
RPGRIP1LENSG00000103494.8316.46980715.71580-1.177308.696507.01960HepG2DDX59
RPGRIP1LENSG00000103494.8126.18330240.63630-0.931304.797604.00370HepG2DDX6
RPGRIP1LENSG00000103494.8201.61130323.30670-0.681305.005004.08430HepG2DNAJC21
RPGRIP1LENSG00000103494.8242.22630320.42450-0.403602.500001.87420HepG2DNAJC2
RPGRIP1LENSG00000103494.8102.81720231.28760-1.169607.037006.12270HepG2EIF2S1
RPGRIP1LENSG00000103494.8165.91590255.57970-0.623302.726302.09160HepG2EIF4A3
RPGRIP1LENSG00000103494.8420.10160524.91680-0.321402.163501.40750HepG2EIF4G1
RPGRIP1LENSG00000103494.8347.55300502.83870-0.532903.538402.62650HepG2EIF4G2
RPGRIP1LENSG00000103494.8325.13410594.04650-0.8695011.8133010.71230HepG2ETF1
RPGRIP1LENSG00000103494.8204.16910285.39390-0.483202.405901.31860HepG2FAM120A
RPGRIP1LENSG00000103494.8392.31670631.33600-0.686402.398101.45890HepG2FTO
RPGRIP1LENSG00000103494.8222.43840154.977100.521302.108801.41450HepG2FUBP3
RPGRIP1LENSG00000103494.8364.94490257.930500.500602.429701.77970HepG2FXR1
RPGRIP1LENSG00000103494.8481.33690714.47950-0.569803.871803.12560HepG2GPKOW
RPGRIP1LENSG00000103494.8153.77740326.40380-1.085808.697307.64660HepG2HNRNPA1
RPGRIP1LENSG00000103494.8191.83550363.05480-0.920306.796605.74700HepG2HNRNPC
RPGRIP1LENSG00000103494.8337.31710524.71220-0.637406.211605.19510HepG2HNRNPF
RPGRIP1LENSG00000103494.8249.20340484.68640-0.9597012.8691011.51260HepG2HNRNPL
RPGRIP1LENSG00000103494.8243.76070681.83920-1.4840020.6299019.16220HepG2HNRNPLL
RPGRIP1LENSG00000103494.8495.24690351.242500.495603.834402.73390HepG2HNRNPM
RPGRIP1LENSG00000103494.8271.03330516.69790-0.9309010.126508.82420HepG2IGF2BP1
RPGRIP1LENSG00000103494.8446.37410291.263800.615803.069701.74950HepG2KRR1
RPGRIP1LENSG00000103494.8396.89620259.455000.613202.190801.62620HepG2MATR3
RPGRIP1LENSG00000103494.8352.66260527.60700-0.581205.184304.14470HepG2NOL12
RPGRIP1LENSG00000103494.8209.20610336.52670-0.685802.338001.34070HepG2NONO
RPGRIP1LENSG00000103494.8388.64390604.56700-0.637504.986703.99360HepG2NSUN2
RPGRIP1LENSG00000103494.8516.67890356.998200.533304.801403.72100HepG2PARN
RPGRIP1LENSG00000103494.8353.53250264.071800.420802.496401.91330HepG2PCBP1
RPGRIP1LENSG00000103494.8220.18940321.67720-0.546903.556002.73080HepG2PPIL4
RPGRIP1LENSG00000103494.8301.37130390.36030-0.373302.250501.54570HepG2PRPF4
RPGRIP1LENSG00000103494.8344.84640268.702000.359802.047701.56470HepG2PTBP1
RPGRIP1LENSG00000103494.8245.52500503.64350-1.0365011.3142010.21930HepG2PUF60
RPGRIP1LENSG00000103494.8321.46200534.24770-0.732907.132106.07410HepG2PUM2
RPGRIP1LENSG00000103494.8249.37870331.58350-0.411002.488901.89660HepG2PUS1
RPGRIP1LENSG00000103494.8197.07550378.33180-0.940904.618903.72070HepG2RAVER1
RPGRIP1LENSG00000103494.8387.89090619.04750-0.674407.223005.92700HepG2RBM15
RPGRIP1LENSG00000103494.8221.01480344.75020-0.641402.751201.69300HepG2RCC2
RPGRIP1LENSG00000103494.8469.81480299.040300.651705.586504.86010HepG2NELFE
RPGRIP1LENSG00000103494.8423.08930278.514100.603104.773503.99330HepG2RECQL
RPGRIP1LENSG00000103494.8213.37570565.15080-1.4052018.7047017.24400HepG2RPLP0
RPGRIP1LENSG00000103494.8221.97020310.75610-0.485402.377301.80320HepG2RPS19
RPGRIP1LENSG00000103494.8157.96720279.89870-0.825303.793602.89150HepG2RRP9
RPGRIP1LENSG00000103494.8250.87930548.61030-1.1288010.653909.26690HepG2SF3A3
RPGRIP1LENSG00000103494.8508.05790674.89710-0.409702.698302.00080HepG2SF3B1
RPGRIP1LENSG00000103494.8372.66190279.755100.413602.316301.76890HepG2SF3B4
RPGRIP1LENSG00000103494.8453.19510750.93740-0.728604.411703.41500HepG2SNRNP70
RPGRIP1LENSG00000103494.8327.07650560.79370-0.777809.372908.60050HepG2SRFBP1
RPGRIP1LENSG00000103494.8467.52720292.003100.679006.153405.51670HepG2SRSF1
RPGRIP1LENSG00000103494.8378.55700726.16030-0.939807.895306.12840HepG2SRSF3
RPGRIP1LENSG00000103494.8304.84180497.26950-0.706007.395706.43890HepG2SRSF5
RPGRIP1LENSG00000103494.8250.05750515.49090-1.0437014.0842012.72310HepG2SRSF7
RPGRIP1LENSG00000103494.8260.83060486.90230-0.9005011.2128010.31480HepG2SSB
RPGRIP1LENSG00000103494.8177.88700364.99420-1.036906.089905.14460HepG2SUPV3L1
RPGRIP1LENSG00000103494.8384.00410664.53150-0.791207.611706.48590HepG2TARDBP
RPGRIP1LENSG00000103494.8145.65420244.66540-0.748303.295202.21260HepG2TFIP11
RPGRIP1LENSG00000103494.8183.75970350.47800-0.931508.314607.53220HepG2TIAL1
RPGRIP1LENSG00000103494.8273.48210435.43470-0.671002.834402.19890HepG2U2AF1
RPGRIP1LENSG00000103494.8222.02500580.55300-1.386702.300601.41210HepG2U2AF2
RPGRIP1LENSG00000103494.8344.41260520.80310-0.596603.281002.37070HepG2UBE2L3
RPGRIP1LENSG00000103494.8147.37350215.63870-0.549102.006601.36020HepG2UCHL5
RPGRIP1LENSG00000103494.8240.08540486.53480-1.0190014.1633012.81500HepG2UPF1
RPGRIP1LENSG00000103494.8174.05320334.32070-0.941704.336103.06320HepG2UPF2
RPGRIP1LENSG00000103494.8357.44100500.07960-0.484503.924802.69870HepG2UTP18
RPGRIP1LENSG00000103494.8236.87500359.29560-0.601002.568301.86850HepG2XRN2
RPGRIP1LENSG00000103494.8261.30630535.09320-1.0340016.8840015.81740HepG2ZNF622
RPGRIP1LENSG00000103494.8151.58990252.49010-0.736103.051602.36460K562AKAP8L
RPGRIP1LENSG00000103494.8120.20010190.50360-0.664403.098702.34440K562EIF2S2
RPGRIP1LENSG00000103494.8333.61140227.732300.550702.935702.11840K562GPKOW
RPGRIP1LENSG00000103494.8203.13070142.756100.508802.152801.36560K562HNRNPU
RPGRIP1LENSG00000103494.8122.64210226.23120-0.883302.893101.87420K562PABPN1
RPGRIP1LENSG00000103494.8126.98010178.25980-0.489401.924401.35220K562PTBP1
RPGRIP1LENSG00000103494.8151.46780250.33570-0.724903.062402.49580K562PUS1
RPGRIP1LENSG00000103494.8159.60800243.96840-0.612202.399001.84010K562RBM15
RPGRIP1LENSG00000103494.8333.17130243.696700.451102.725901.79550K562SRPK2
RPGRIP1LENSG00000103494.8365.10500255.596200.514303.649602.83310K562UPF1
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for RPGRIP1L is not available on ENCORE database.





2 RBPs can affect the splicing of RPGRIP1L :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SERPGRIP1LENSG00000103494.8chr16-536722215367232353671606536717665367494453675028-0.337000.004390.06819excludedHepG2U2AF1
SERPGRIP1LENSG00000103494.8chr16-5367222153672323536716065367176653674944536750280.600000.000000.00251includedHepG2EFTUD2

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for RPGRIP1L is not avaliable on ENCORE database.