RNF13

General Information

Gene Name       : RNF13
Gene ID             : ENSG00000082996.19
Essential Gene : No

Functions

Localization

Domains (AlphaFold: RNF13)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878RNF13ENSG00000082996.1922.3918.4920.44ENCSR000AEF
HepG2RNF13ENSG00000082996.1913.0827.5320.30ENCSR985KAT
K562RNF13ENSG00000082996.1910.6210.5810.60ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for RNF13 is not avaliable on ENCORE database.



Proteins bound to RNA
  • RNF13 RNA is bound by 13 proteins.  







eCLIP assay for RNF13 is not avaliable on ENCORE database.





13 proteins are bound to RNF13 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr3149679781149679847+3'-UTR5.740315.06516K562PUM2
chr3149629857149629905+3'-UTR,CDS,intron-Proximal4.735474.75655HepG2PRPF8
chr3149619866149619954+3'-UTR,CDS,intron-Distal,intron-Proximal3.149385.00751HepG2BCLAF1
chr3149531019149531088+5'-UTR,intron-Distal,intron-Proximal5.1595310.32964HepG2DDX3X
chr3149531114149531181+5'-UTR,intron-Distal,intron-Proximal3.6858112.75073HepG2PRPF8
chr3149561317149561441+intron-Distal3.360744.88448HepG2HNRNPL
chr3149547447149547514+intron-Distal4.201693.23168HepG2DDX59
chr3149591732149591847+intron-Distal4.610255.43661HepG2CSTF2
chr3149555174149555264+intron-Distal3.425074.14725HepG2DDX59
chr3149586377149586472+intron-Distal4.785325.75114HepG2PTBP1
chr3149658611149658684+intron-Distal4.905884.38664K562QKI
chr3149654487149654555+intron-Distal4.435864.66899HepG2HNRNPM
chr3149601055149601144+intron-Distal3.972103.41738HepG2PTBP1
chr3149658614149658701+intron-Distal6.3690019.89131HepG2QKI
chr3149586335149586445+intron-Distal5.9898912.63014HepG2PCBP2
chr3149619589149619705+intron-Distal4.195494.53660HepG2KHSRP
chr3149654790149654858+intron-Distal3.243953.91859HepG2SUGP2
chr3149658049149658091+intron-Distal4.163294.05848HepG2QKI
chr3149573678149573753+intron-Distal4.356234.17759HepG2QKI
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for RNF13 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for RNF13 is not available on ENCORE database.

  • 73 RBPs can affect the levels of RNF13.  








The Knockdown/knockout RNA-Seq assay for RNF13 is not available on ENCORE database.





73 RBPs can affect the gene expression of RNF13 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
RNF13ENSG00000082996.15526.33250687.56740-0.385503.713403.02880HepG2ACO1
RNF13ENSG00000082996.151188.007701808.73480-0.606405.294004.58720HepG2AKAP1
RNF13ENSG00000082996.151039.527901496.60570-0.525804.699703.68920HepG2ASCC1
RNF13ENSG00000082996.15697.19330472.943500.559804.270503.17590HepG2BCLAF1
RNF13ENSG00000082996.151087.37920808.137300.428104.176103.25320HepG2CALR
RNF13ENSG00000082996.15387.48880741.37160-0.936006.656005.47120HepG2CNOT7
RNF13ENSG00000082996.15834.53450629.572400.406503.210902.22540HepG2DDX24
RNF13ENSG00000082996.15573.60740405.437200.500503.330201.79910HepG2DDX28
RNF13ENSG00000082996.151197.32400701.745200.770703.684802.55890HepG2DDX59
RNF13ENSG00000082996.15965.736001488.27120-0.623905.445604.60460HepG2DDX6
RNF13ENSG00000082996.15729.95810573.676900.347502.259701.37420HepG2DHX30
RNF13ENSG00000082996.15793.77780657.803500.271002.064101.46590HepG2DKC1
RNF13ENSG00000082996.15446.21190589.51420-0.401803.350902.64560HepG2DNAJC2
RNF13ENSG00000082996.15494.56720666.83820-0.431202.460801.58990HepG2EEF2
RNF13ENSG00000082996.151075.376901430.85930-0.412003.075802.45200HepG2EIF2S1
RNF13ENSG00000082996.151104.531901581.33940-0.517703.973903.21210HepG2EIF4A3
RNF13ENSG00000082996.151086.426701539.51910-0.502903.139602.40950HepG2EIF4B
RNF13ENSG00000082996.151331.08630915.210800.540302.733301.92370HepG2EIF4G2
RNF13ENSG00000082996.15842.75640671.834300.326902.309401.54750HepG2EWSR1
RNF13ENSG00000082996.15576.75720780.53200-0.436503.327602.47000HepG2FUBP3
RNF13ENSG00000082996.15794.373301595.28840-1.0059015.0387013.56130HepG2FXR1
RNF13ENSG00000082996.15747.664401479.97790-0.9851013.2109011.81780HepG2G3BP1
RNF13ENSG00000082996.151197.068001571.03730-0.392202.998302.07080HepG2G3BP2
RNF13ENSG00000082996.15795.23210576.048000.465105.145204.20420HepG2HNRNPF
RNF13ENSG00000082996.15811.298601498.34550-0.8851013.0460011.63380HepG2HNRNPK
RNF13ENSG00000082996.15717.36660882.13780-0.298303.022102.32030HepG2HNRNPL
RNF13ENSG00000082996.151149.17880668.520100.781509.083108.01550HepG2HNRNPLL
RNF13ENSG00000082996.15454.99640640.17060-0.492603.664402.58190HepG2HNRNPM
RNF13ENSG00000082996.15409.30730663.51730-0.696909.425908.35830HepG2HNRNPU
RNF13ENSG00000082996.15829.03650567.242800.547404.468903.56730HepG2IGF2BP1
RNF13ENSG00000082996.15700.645101411.65650-1.010604.991703.68710HepG2IGF2BP3
RNF13ENSG00000082996.15934.427701513.09930-0.695405.886304.37360HepG2KHSRP
RNF13ENSG00000082996.15973.960001604.81140-0.720507.299606.31180HepG2MATR3
RNF13ENSG00000082996.15891.493101642.64230-0.8817011.2633010.02800HepG2NCBP2
RNF13ENSG00000082996.15969.00950592.764500.709007.418506.23170HepG2NSUN2
RNF13ENSG00000082996.15763.699901463.01180-0.9379012.5521011.04450HepG2PABPC4
RNF13ENSG00000082996.15899.695301464.95630-0.703308.626607.65310HepG2PCBP1
RNF13ENSG00000082996.15768.603501490.54900-0.9555014.6048013.54000HepG2PTBP1
RNF13ENSG00000082996.151169.39280973.082600.265003.040902.42550HepG2PUM1
RNF13ENSG00000082996.151461.41190972.369200.587708.519807.37090HepG2PUM2
RNF13ENSG00000082996.15983.18950700.325100.489306.992606.09000HepG2PUS1
RNF13ENSG00000082996.15861.293301614.51190-0.9065012.6781011.48230HepG2QKI
RNF13ENSG00000082996.15798.491501020.22550-0.353503.190202.64400HepG2RBM22
RNF13ENSG00000082996.151149.862001465.19380-0.349603.031202.32920HepG2RBM25
RNF13ENSG00000082996.15780.850301658.92000-1.0871017.0490015.92700HepG2NELFE
RNF13ENSG00000082996.15854.728801544.90970-0.8540012.9734011.78550HepG2RECQL
RNF13ENSG00000082996.15947.83350620.545500.611005.930604.98640HepG2RPLP0
RNF13ENSG00000082996.15403.66580526.73410-0.383902.266301.70410HepG2RPS19
RNF13ENSG00000082996.151203.79140661.707900.8632010.761009.45350HepG2SF3B1
RNF13ENSG00000082996.15972.962101552.03100-0.673708.348207.40770HepG2SF3B4
RNF13ENSG00000082996.15404.70950689.09840-0.7678012.6026011.38450HepG2SMN1
RNF13ENSG00000082996.151081.38670736.264300.554503.083602.25810HepG2SNRNP70
RNF13ENSG00000082996.151396.927501152.338600.277603.257002.72740HepG2SRFBP1
RNF13ENSG00000082996.15677.661901619.91210-1.2573020.6561019.61680HepG2SRSF1
RNF13ENSG00000082996.15956.41010711.985600.425702.390501.46810HepG2SRSF3
RNF13ENSG00000082996.15824.74850565.948300.543206.967305.94320HepG2SRSF7
RNF13ENSG00000082996.15816.623701317.82250-0.690407.784106.94330HepG2SRSF9
RNF13ENSG00000082996.15547.364201029.31690-0.9111020.8492019.39430HepG2SUCLG1
RNF13ENSG00000082996.15805.52590626.564600.362402.738501.80160HepG2SUPT6H
RNF13ENSG00000082996.15987.368801455.83960-0.560206.947106.12770HepG2TAF15
RNF13ENSG00000082996.15862.14730651.576700.403902.907202.16660HepG2TARDBP
RNF13ENSG00000082996.151116.625101337.93110-0.260902.084201.35590HepG2TIA1
RNF13ENSG00000082996.15493.53460644.77360-0.385602.976402.46030HepG2TIAL1
RNF13ENSG00000082996.15988.69780793.671200.316902.129301.57080HepG2U2AF1
RNF13ENSG00000082996.15745.08500880.66650-0.241202.008801.39720HepG2UPF1
RNF13ENSG00000082996.15647.34680850.25150-0.393404.188403.47530HepG2UTP3
RNF13ENSG00000082996.15717.89800602.700300.252201.958101.37800HepG2ZC3H8
RNF13ENSG00000082996.151249.26980968.566900.367105.479604.77680HepG2ZNF622
RNF13ENSG00000082996.15307.37870424.55100-0.465902.661702.02010K562AKAP8L
RNF13ENSG00000082996.15238.04450338.20060-0.506602.747001.47020K562CIRBP
RNF13ENSG00000082996.15312.55040216.675600.528502.850402.01680K562EIF4A3
RNF13ENSG00000082996.15384.32610246.584300.640103.381502.58540K562G3BP2
RNF13ENSG00000082996.15606.11250446.121100.442102.796701.99730K562HSPD1
RNF13ENSG00000082996.15237.48000322.21000-0.440202.414301.78700K562PTBP1
RNF13ENSG00000082996.15802.96240505.799500.666706.634105.37010K562PUF60
RNF13ENSG00000082996.15808.63610537.831900.588207.040205.28150K562PUM1
RNF13ENSG00000082996.15299.23160410.23760-0.455202.765702.17270K562RBM15
RNF13ENSG00000082996.15224.10730308.93730-0.463102.341601.57310K562RBM22
RNF13ENSG00000082996.15211.25040337.79020-0.677204.012802.55850K562UTP3
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for RNF13 is not available on ENCORE database.





5 RBPs can affect the splicing of RNF13 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SERNF13ENSG00000082996.15chr3+149619858149619949149613259149613357149629764149629870-0.174000.000320.01266excludedK562AKAP8L
SERNF13ENSG00000082996.15chr3+149677842149677923149638920149639014149678526149678620-0.122000.006500.05766excludedK562AQR
SERNF13ENSG00000082996.15chr3+149619858149619949149613259149613357149629764149629870-0.124000.003130.06440excludedK562RBM15
SERNF13ENSG00000082996.15chr3+149619858149619949149613259149613357149629764149629870-0.216000.000030.00179excludedK562AGGF1
A3SSRNF13ENSG00000082996.15chr3+1496778051496779231496778421496779231496389201496390140.155000.000370.00284longerK562AQR
A3SSRNF13ENSG00000082996.15chr3+1496198321496199491496198581496199491496132591496133470.054000.013070.06652longerK562AQR
A5SSRNF13ENSG00000082996.15chr3+1496132591496133571496132591496133471496198581496199490.316000.002940.04644longerK562AQR
A5SSRNF13ENSG00000082996.15chr3+1496132591496133571496132591496133471496198581496199490.088000.000020.03512longerHepG2RBM15
A5SSRNF13ENSG00000082996.15chr3+1496132591496133571496132591496133471496198581496199490.152000.000310.06241longerHepG2DDX6
MXERNF13ENSG00000082996.15chr3+149619858149619949149629764149629870149613259149613347149638920149639014-0.303000.000060.000762includedK562AQR

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for RNF13 is not avaliable on ENCORE database.