RNF111

General Information

Gene Name       : RNF111
Gene ID             : ENSG00000157450.15
Essential Gene : No

Functions

Localization

Domains (AlphaFold: RNF111)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878RNF111ENSG00000157450.1511.4312.1111.77ENCSR000AEF
HepG2RNF111ENSG00000157450.1516.6610.6513.66ENCSR985KAT
K562RNF111ENSG00000157450.1510.4510.1910.32ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for RNF111 is not avaliable on ENCORE database.



Proteins bound to RNA
  • RNF111 RNA is bound by 22 proteins.  







eCLIP assay for RNF111 is not avaliable on ENCORE database.





22 proteins are bound to RNF111 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr155938732959387417+3'-UTR3.694063.26999K562KHSRP
chr155938752059387567+3'-UTR4.090534.13936K562PUM2
chr155928028859280400+5'-UTR,intron-Distal,intron-Proximal3.574154.12529K562GTF2F1
chr155928029359280392+5'-UTR,intron-Distal,intron-Proximal3.600288.68344HepG2RBM22
chr155928028559280391+5'-UTR,intron-Distal,intron-Proximal4.613965.20041HepG2PRPF4
chr155928030759280398+5'-UTR,intron-Distal,intron-Proximal3.811514.41402K562DROSHA
chr155929629159296388+5'-UTR,CDS,intron-Distal,intron-Proximal3.109103.46531K562KHSRP
chr155937328759373365+CDS4.115023.31982HepG2IGF2BP1
chr155934457859344632+CDS,intron-Proximal4.756605.23259HepG2BCLAF1
chr155935918459359262+CDS3.411824.26492HepG2BCLAF1
chr155937621459376347+CDS,intron-Distal,intron-Proximal3.249323.06005HepG2QKI
chr155937326459373349+CDS3.146853.34065K562IGF2BP1
chr155932314559323196+CDS5.8374015.69259K562RBM15
chr155934451959344588+CDS3.728283.14999HepG2GRWD1
chr155932386259323900+CDS3.267143.17151K562UCHL5
chr155937629959376364+CDS,intron-Proximal3.527314.83230K562AQR
chr155938325659383325+CDS,intron-Proximal4.234653.53690K562ZNF622
chr155937326659373418+CDS3.505535.45345K562HNRNPL
chr155936826159368313+CDS5.042657.23707K562RBM15
chr155937346659373594+CDS,intron-Distal,intron-Proximal3.790588.61602K562AQR
chr155935919859359252+CDS4.115794.15208K562RBM15
chr155935915259359229+CDS3.842093.38114HepG2GRWD1
chr155917095359171030+intron-Distal3.464154.90436HepG2HLTF
chr155933696959337238+intron-Distal4.224583.49011K562KHSRP
chr155919172159191839+intron-Distal3.674443.39827HepG2MATR3
chr155917277159172824+intron-Distal3.475565.82118HepG2HLTF
chr155932168059321782+intron-Distal3.517774.13575K562KHSRP
chr155935933959359419+intron-Distal,intron-Proximal5.102377.79427HepG2PTBP1
chr155929640659296499+intron-Distal,intron-Proximal3.010935.16337HepG2U2AF2
chr155915994259160022+intron-Distal3.181624.30137HepG2PTBP1
chr155935947959359620+intron-Distal4.332527.32452K562ILF3
chr155919172359191811+intron-Distal4.365404.51355HepG2PTBP1
chr155935947659359592+intron-Distal6.6694823.12095HepG2PCBP2
chr155918370859183752+intron-Distal3.897973.27714HepG2HNRNPL
chr155919460159194653+intron-Distal3.013153.80334HepG2U2AF2
chr155935946959359579+intron-Distal3.6387610.43581HepG2PTBP1
chr155918375259183816+intron-Distal3.490484.64467HepG2HNRNPL
chr155928105359281144+intron-Distal3.023835.34873K562KHSRP
chr155918578059185838+intron-Distal3.439563.59771HepG2QKI
chr155928096459281053+intron-Distal3.485556.59733K562KHSRP
chr155935935959359418+intron-Distal,intron-Proximal4.314118.75579K562PTBP1
chr155917218659172240+intron-Distal4.889425.90710HepG2HLTF
chr155932146359321603+intron-Distal4.1378811.11621K562KHSRP
chr155935381159353965+intron-Distal3.697718.57718HepG2PTBP1
chr155917483959174897+intron-Distal4.576564.42137HepG2HLTF
chr155928126259281333+intron-Distal4.347165.18738K562TARDBP
chr155918376859183857+intron-Distal3.778593.05187HepG2QKI
chr155920506459205162+intron-Distal4.076523.80778HepG2QKI
chr155935384459353976+intron-Distal6.3908316.14543K562PTBP1
chr155915751759157603+intron-Distal,intron-Proximal3.611395.82976HepG2PRPF4
chr155928300859283164+intron-Distal4.622368.14995HepG2U2AF2
chr155935945959359587+intron-Distal4.5955810.68324K562PTBP1
chr155915752959157594+intron-Proximal3.228185.09109HepG2GTF2F1
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for RNF111 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for RNF111 is not available on ENCORE database.

  • 47 RBPs can affect the levels of RNF111.  








The Knockdown/knockout RNA-Seq assay for RNF111 is not available on ENCORE database.





47 RBPs can affect the gene expression of RNF111 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
RNF111ENSG00000157450.11986.04900700.341500.493503.197402.63040HepG2AKAP1
RNF111ENSG00000157450.11701.29750574.265900.288202.210001.51630HepG2AKAP8L
RNF111ENSG00000157450.11949.93970700.566100.439203.979303.07810HepG2CALR
RNF111ENSG00000157450.11775.60600550.550300.494303.520102.65460HepG2CIRBP
RNF111ENSG00000157450.11712.803201003.54020-0.493502.435201.78410HepG2CPSF6
RNF111ENSG00000157450.11410.21260545.34140-0.410803.100402.02130HepG2YBX3
RNF111ENSG00000157450.11894.77540662.936100.432604.419503.64030HepG2CELF1
RNF111ENSG00000157450.11916.40380670.909500.449803.055102.40280HepG2DDX3X
RNF111ENSG00000157450.11568.84270421.714200.431702.687601.79650HepG2EIF3D
RNF111ENSG00000157450.11821.20980636.027200.368602.088401.53440HepG2NCBP2
RNF111ENSG00000157450.11532.00340706.93340-0.410103.687702.80560HepG2NOL12
RNF111ENSG00000157450.11851.05340673.575200.337303.081502.27060HepG2PRPF4
RNF111ENSG00000157450.11537.04210395.972900.439502.565801.78710HepG2PRPF8
RNF111ENSG00000157450.11771.29750612.590100.332302.658902.12090HepG2PTBP1
RNF111ENSG00000157450.11831.20030663.448700.325102.429601.83790HepG2QKI
RNF111ENSG00000157450.111199.47000841.028200.512106.888206.15750HepG2RBM22
RNF111ENSG00000157450.11804.26970602.122900.417503.300102.56920HepG2RBM25
RNF111ENSG00000157450.11529.20240391.707100.433902.312201.58640HepG2RRP9
RNF111ENSG00000157450.11428.25380532.01590-0.313002.240101.64960HepG2SAFB2
RNF111ENSG00000157450.111602.24350887.175000.852702.107101.51760HepG2SF3A3
RNF111ENSG00000157450.111200.95540949.907100.338203.958203.39020HepG2SRFBP1
RNF111ENSG00000157450.11867.95570665.709100.382603.760803.23120HepG2SRSF1
RNF111ENSG00000157450.11768.19290541.590200.504206.167305.40080HepG2SRSF9
RNF111ENSG00000157450.111018.33590824.738500.304103.061802.52790HepG2SSB
RNF111ENSG00000157450.111216.81790748.763800.700407.729106.68320HepG2U2AF1
RNF111ENSG00000157450.111541.61790850.883800.857302.478901.55150HepG2U2AF2
RNF111ENSG00000157450.11332.86570502.92920-0.595403.360202.56560HepG2XRN2
RNF111ENSG00000157450.111148.45640865.317100.408306.228705.49340HepG2ZNF622
RNF111ENSG00000157450.111369.874101120.741500.289502.404501.86930K562AGGF1
RNF111ENSG00000157450.112101.918901160.064000.8574013.6401012.47780K562AQR
RNF111ENSG00000157450.111128.711901474.10470-0.385203.884102.95620K562CPSF6
RNF111ENSG00000157450.112448.271701925.861800.346204.033302.84700K562CELF1
RNF111ENSG00000157450.11847.85650654.398900.373502.444001.58760K562EFTUD2
RNF111ENSG00000157450.11492.43810610.18230-0.309302.009101.32180K562EIF3G
RNF111ENSG00000157450.111312.944201566.33730-0.254602.431501.54710K562EIF4G2
RNF111ENSG00000157450.11751.662801263.22910-0.749003.308002.37580K562FIP1L1
RNF111ENSG00000157450.11900.275401229.09080-0.449204.410903.46140K562GRSF1
RNF111ENSG00000157450.11646.592401038.89680-0.684102.713001.79220K562HNRNPM
RNF111ENSG00000157450.111148.199601712.84870-0.577002.259101.53620K562HSPD1
RNF111ENSG00000157450.111033.023901373.74900-0.411203.759602.72780K562METAP2
RNF111ENSG00000157450.11867.906401110.47210-0.355604.195303.21730K562MTPAP
RNF111ENSG00000157450.11547.58160761.97710-0.476703.038001.53490K562PHF6
RNF111ENSG00000157450.11914.573401433.83150-0.648702.902202.05970K562PPIG
RNF111ENSG00000157450.11497.47390699.75930-0.492203.656902.59760K562PSIP1
RNF111ENSG00000157450.11648.19760865.72880-0.417503.707702.95000K562PTBP1
RNF111ENSG00000157450.112237.404101709.001000.388603.881402.92010K562PUF60
RNF111ENSG00000157450.111491.221001781.07760-0.256302.393001.49950K562PUM2
RNF111ENSG00000157450.111774.480801156.355500.617707.986807.11140K562PUS1
RNF111ENSG00000157450.111441.784401126.864900.355402.048201.52380K562RBM15
RNF111ENSG00000157450.111444.590801217.448100.246702.198801.46480K562SF3A3
RNF111ENSG00000157450.111917.17160954.509401.006004.925403.13800K562SNRNP200
RNF111ENSG00000157450.111031.40060736.670500.485405.304104.19700K562U2AF2
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for RNF111 is not available on ENCORE database.





10 RBPs can affect the splicing of RNF111 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SERNF111ENSG00000157450.11chr15+5929620059296373592798755928026759323002593233370.340000.000690.09213includedK562MATR3
SERNF111ENSG00000157450.11chr15+593763275937645359373134593734835937785759377984-0.164000.002230.02405excludedK562AQR
SERNF111ENSG00000157450.11chr15+5929620059296373592798755928026759323002593233370.217000.000880.05785includedK562HNRNPL
SERNF111ENSG00000157450.11chr15+5929620059296373592798755928026759323002593233370.343000.000080.00487includedK562TARDBP
SERNF111ENSG00000157450.11chr15+593763275937645359373134593734835937785759377984-0.092000.002620.05750excludedK562AGGF1
SERNF111ENSG00000157450.11chr15+5929620059296373592798755928026759323002593233370.233000.001940.06615includedK562PTBP1
A3SSRNF111ENSG00000157450.11chr15+593847115938483959384735593848395938325759383353-0.351000.000000.00135shorterHepG2DROSHA
A3SSRNF111ENSG00000157450.11chr15+5938471159384839593847355938483959383257593833530.286000.003210.09260longerK562U2AF2
A3SSRNF111ENSG00000157450.11chr15+5938471159384839593847355938483959383257593833530.201000.003440.07047longerHepG2U2AF2
A3SSRNF111ENSG00000157450.11chr15+5938471159384839593847355938483959383199593833530.147000.017310.08434longerK562AQR
A3SSRNF111ENSG00000157450.11chr15+5935053359350693593505545935069359347809593480440.082000.009070.04862longerK562AQR
A3SSRNF111ENSG00000157450.11chr15+5938184359381958593818655938195859377816593779840.129000.000850.00599longerK562AQR
A3SSRNF111ENSG00000157450.11chr15+5938323559383353593832575938335359381843593819580.102000.000140.00117longerK562AQR
A3SSRNF111ENSG00000157450.11chr15+593763005937645359376327593764535937313459373483-0.253000.000090.01756shorterK562SF3B1
A3SSRNF111ENSG00000157450.11chr15+593847115938483959384735593848395938325759383353-0.254000.000850.06930shorterK562SRSF1
MXERNF111ENSG00000157450.11chr15+59376300593764535937785759377984593731345937348359381865593819580.175000.003350.025701includedK562AQR

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for RNF111 is not avaliable on ENCORE database.