RGPD2

General Information

Gene Name       : RGPD2
Gene ID             : ENSG00000185304.14
Essential Gene : No

Functions

Localization

Domains (AlphaFold: RGPD2)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878RGPD2ENSG00000185304.140.000.000.00ENCSR000AEF
HepG2RGPD2ENSG00000185304.140.410.160.28ENCSR985KAT
K562RGPD2ENSG00000185304.142.673.302.98ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for RGPD2 is not avaliable on ENCORE database.



Proteins bound to RNA
  • RGPD2 RNA is bound by 1 proteins.  







eCLIP assay for RGPD2 is not avaliable on ENCORE database.





1 proteins are bound to RGPD2 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr28812441488124504-intron-Distal4.153344.00698HepG2GRSF1
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for RGPD2 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for RGPD2 is not available on ENCORE database.

  • 67 RBPs can affect the levels of RGPD2.  








The Knockdown/knockout RNA-Seq assay for RGPD2 is not available on ENCORE database.





67 RBPs can affect the gene expression of RGPD2 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
RGPD2ENSG00000185304.1222.841900.0000099999.999905.483404.05030HepG2YBX3
RGPD2ENSG00000185304.1223.408000.0000099999.999906.701305.78400HepG2CELF1
RGPD2ENSG00000185304.129.797700.0000099999.999902.739401.76630HepG2DDX59
RGPD2ENSG00000185304.1222.305000.0000099999.999907.315006.21500HepG2DNAJC21
RGPD2ENSG00000185304.1216.973600.0000099999.999905.939405.03720HepG2DNAJC2
RGPD2ENSG00000185304.129.417000.0000099999.999903.062802.20740HepG2EIF4G2
RGPD2ENSG00000185304.1213.806900.0000099999.999902.443501.87170HepG2HNRNPU
RGPD2ENSG00000185304.1254.091008.371502.691706.610405.31480HepG2LARP4
RGPD2ENSG00000185304.1253.187801.588305.065405.816804.91360HepG2NCBP2
RGPD2ENSG00000185304.1212.078600.0000099999.999902.117401.43280HepG2PRPF4
RGPD2ENSG00000185304.1228.446900.0000099999.999903.516202.76410HepG2PUM2
RGPD2ENSG00000185304.1241.358802.256304.196109.247808.07020HepG2RBM25
RGPD2ENSG00000185304.1224.395702.769303.138903.236902.06850HepG2RPS5
RGPD2ENSG00000185304.1218.759800.0000099999.999906.461005.55920HepG2SRSF5
RGPD2ENSG00000185304.1212.176400.0000099999.999903.553302.11450HepG2SSRP1
RGPD2ENSG00000185304.1243.565002.247904.2764010.238109.26800HepG2TAF15
RGPD2ENSG00000185304.1232.900200.0000099999.999908.491806.99750HepG2UBE2L3
RGPD2ENSG00000185304.121260.682701062.292000.246902.123401.61460K562AGGF1
RGPD2ENSG00000185304.121372.587501105.374100.312302.507901.88550K562AKAP8L
RGPD2ENSG00000185304.12681.366901016.51790-0.577105.682103.80560K562APOBEC3C
RGPD2ENSG00000185304.121944.37620918.135401.0824019.9384018.53310K562AQR
RGPD2ENSG00000185304.12828.26300521.560700.667206.068904.76560K562BOP1
RGPD2ENSG00000185304.12901.11930491.990800.873009.475406.87360K562BUD13
RGPD2ENSG00000185304.121537.391101269.461000.276202.550701.42860K562CCDC124
RGPD2ENSG00000185304.122015.968301416.953100.508606.300204.84040K562CELF1
RGPD2ENSG00000185304.12798.09990539.907000.563803.762801.81750K562ESF1
RGPD2ENSG00000185304.12627.71130417.649200.587704.231202.78930K562FKBP4
RGPD2ENSG00000185304.12855.91530564.284100.600905.502404.28760K562FMR1
RGPD2ENSG00000185304.12704.79960478.303400.559204.218303.06940K562FTO
RGPD2ENSG00000185304.12674.05040409.278500.719708.690906.17770K562FUS
RGPD2ENSG00000185304.12454.43740710.61390-0.645002.444101.86870K562FXR1
RGPD2ENSG00000185304.12870.076101372.65780-0.657803.904801.36650K562FXR2
RGPD2ENSG00000185304.121292.76170745.889800.793302.219701.59700K562G3BP2
RGPD2ENSG00000185304.12807.29020601.345000.424804.032702.66300K562GLRX3
RGPD2ENSG00000185304.12928.52280480.980100.9489013.8895012.63370K562HNRNPC
RGPD2ENSG00000185304.12302.37430417.64940-0.466002.255701.41930K562HNRNPM
RGPD2ENSG00000185304.121464.23630989.410000.565402.822801.38640K562ILF2
RGPD2ENSG00000185304.121845.365501173.039200.6536010.108008.25640K562KIF1C
RGPD2ENSG00000185304.12727.54280452.122400.686203.337702.30240K562KRR1
RGPD2ENSG00000185304.12652.48310891.54350-0.450403.275602.35360K562MAGOH
RGPD2ENSG00000185304.121438.127801122.918800.356803.240902.05220K562MAK16
RGPD2ENSG00000185304.12622.51570889.75680-0.515305.176003.86430K562MATR3
RGPD2ENSG00000185304.12675.70340516.792800.386702.540701.70520K562METAP2
RGPD2ENSG00000185304.121588.150801227.942000.371002.776201.64510K562MSI2
RGPD2ENSG00000185304.12867.54590702.484900.304403.052802.27260K562NSUN2
RGPD2ENSG00000185304.12620.36310793.27930-0.354702.266401.38570K562PCBP2
RGPD2ENSG00000185304.12276.03590426.51840-0.627803.726802.85550K562PRPF8
RGPD2ENSG00000185304.12448.73730866.17950-0.9488015.1494013.66110K562PTBP1
RGPD2ENSG00000185304.121794.103201096.148200.710708.034807.15630K562PUS1
RGPD2ENSG00000185304.121260.48620711.632100.824705.839503.67960K562RAVER1
RGPD2ENSG00000185304.121409.085301068.097300.399604.833104.06950K562RBM15
RGPD2ENSG00000185304.12829.88670569.203900.543903.042401.35520K562RBM17
RGPD2ENSG00000185304.12276.04120393.49120-0.511403.028401.98790K562RCC2
RGPD2ENSG00000185304.12618.00250874.09910-0.500204.122602.75570K562NELFE
RGPD2ENSG00000185304.12542.52700916.67920-0.756707.096305.39900K562RPS3
RGPD2ENSG00000185304.12251.65690373.18780-0.568403.436902.22480K562SAFB
RGPD2ENSG00000185304.12750.50250503.583100.575504.044402.85380K562SF3B1
RGPD2ENSG00000185304.12622.81580885.02020-0.506904.549103.14250K562SRSF4
RGPD2ENSG00000185304.12669.96980477.525200.488404.718702.97700K562SSB
RGPD2ENSG00000185304.12900.15650666.162900.434203.272801.77320K562SSRP1
RGPD2ENSG00000185304.12981.73390609.271900.688106.751204.73000K562STAU1
RGPD2ENSG00000185304.12287.25360420.05040-0.548203.942502.95990K562SYNCRIP
RGPD2ENSG00000185304.12643.38250828.98730-0.365702.426901.66540K562TIA1
RGPD2ENSG00000185304.12845.04970593.841400.508903.888702.15760K562TRIP6
RGPD2ENSG00000185304.12946.34810722.821400.388602.342901.34730K562U2AF1
RGPD2ENSG00000185304.121183.22320746.578800.664309.672408.16850K562U2AF2
RGPD2ENSG00000185304.12991.55220637.353900.637507.714806.20980K562WDR3
RGPD2ENSG00000185304.121523.055201088.371000.484703.041001.68210K562WRN
RGPD2ENSG00000185304.121617.044901034.039600.645005.935304.59420K562ZC3H8
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for RGPD2 is not available on ENCORE database.






No RBPs affect the alternative splcing events of RGPD2 on ENCORE database.





The Knockdown/knockout RNA-Seq assay for RGPD2 is not avaliable on ENCORE database.