RFX1

General Information

Gene Name       : RFX1
Gene ID             : ENSG00000132005.8
Essential Gene : No

Functions

Localization

Domains (AlphaFold: RFX1)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878RFX1ENSG00000132005.80.070.540.31ENCSR000AEF
HepG2RFX1ENSG00000132005.83.920.522.22ENCSR985KAT
K562RFX1ENSG00000132005.83.401.152.27ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for RFX1 is not avaliable on ENCORE database.



Proteins bound to RNA
  • RFX1 RNA is bound by 8 proteins.  







eCLIP assay for RFX1 is not avaliable on ENCORE database.





8 proteins are bound to RFX1 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr191407315114073201-3'-UTR,intron-Distal4.460414.22051K562UPF1
chr191407315214073241-3'-UTR,intron-Distal3.826504.59413K562PCBP1
chr191409288414092934-CDS,intron-Distal,intron-Proximal4.895795.26064K562AQR
chr191409032014090405-CDS,intron-Distal,intron-Proximal3.391134.94119K562SF3B4
chr191408094114081007-CDS,intron-Distal,intron-Proximal3.822433.00996K562BUD13
chr191408350614083556-CDS,intron-Distal,intron-Proximal5.585049.63974K562AQR
chr191409406414094135-CDS,intron-Distal,intron-Proximal4.604393.91589K562SF3B4
chr191407932914079420-CDS,intron-Distal,intron-Proximal5.204038.38577HepG2PRPF8
chr191411650714116648-intron-Distal3.923373.25631HepG2PRPF4
chr191407426714074348-intron-Distal,intron-Proximal4.844676.35567HepG2PRPF8
chr191408346414083506-intron-Distal,intron-Proximal4.846024.86944K562AQR
chr191411123414111316-intron-Distal3.772383.22972K562TARDBP
chr191409392214093999-intron-Distal,intron-Proximal4.831155.65342K562AQR
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for RFX1 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for RFX1 is not available on ENCORE database.

  • 62 RBPs can affect the levels of RFX1.  








The Knockdown/knockout RNA-Seq assay for RFX1 is not available on ENCORE database.





62 RBPs can affect the gene expression of RFX1 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
RFX1ENSG00000132005.4241.04160152.391300.661404.045403.33590HepG2ACO1
RFX1ENSG00000132005.4228.16640153.134600.575203.010002.21360HepG2AKAP8L
RFX1ENSG00000132005.441.1375092.26210-1.165303.654002.78460HepG2CALR
RFX1ENSG00000132005.4192.86690140.955200.452302.071401.34030HepG2DDX19B
RFX1ENSG00000132005.4157.3562077.664801.018602.518601.92800HepG2DDX6
RFX1ENSG00000132005.493.9057048.147400.963703.182902.43310HepG2DNAJC21
RFX1ENSG00000132005.4305.50410219.967600.473802.371301.80700HepG2ETF1
RFX1ENSG00000132005.4181.8112083.235501.127102.239901.61520HepG2FXR1
RFX1ENSG00000132005.4170.54460106.077100.684902.333401.74210HepG2GPKOW
RFX1ENSG00000132005.4164.0670078.279201.067503.071302.33690HepG2HNRNPK
RFX1ENSG00000132005.4175.4065085.663201.033902.368801.78030HepG2NCBP2
RFX1ENSG00000132005.493.4867039.801001.231903.381001.78400HepG2NOLC1
RFX1ENSG00000132005.4182.6176095.565500.934202.281901.30140HepG2NONO
RFX1ENSG00000132005.4101.7011055.364700.877202.301301.50540HepG2PABPC1
RFX1ENSG00000132005.4153.8957091.079100.756702.862102.24820HepG2PCBP1
RFX1ENSG00000132005.4105.0342047.903401.132604.595303.66840HepG2PPIL4
RFX1ENSG00000132005.4150.4049092.701100.698102.368501.85590HepG2PTBP1
RFX1ENSG00000132005.4201.1209088.864701.178307.078506.18130HepG2PUF60
RFX1ENSG00000132005.4176.0228094.328100.899904.933704.18830HepG2PUM1
RFX1ENSG00000132005.4185.8166094.262700.979002.406501.78060HepG2PUM2
RFX1ENSG00000132005.4118.3737056.821601.058703.024201.98650HepG2RBM27
RFX1ENSG00000132005.4113.7334046.142101.301403.384102.21120HepG2RCC2
RFX1ENSG00000132005.4182.46720103.146900.822803.383002.79730HepG2NELFE
RFX1ENSG00000132005.4120.7367052.395401.204303.961503.01190HepG2RPS2
RFX1ENSG00000132005.4102.3623053.494200.936102.291501.31920HepG2RPS5
RFX1ENSG00000132005.493.0220047.830800.959503.186602.50560HepG2SAFB2
RFX1ENSG00000132005.4328.57000198.765000.725003.565302.79650HepG2SF3A3
RFX1ENSG00000132005.4129.3948085.195700.602801.979401.36820HepG2SLBP
RFX1ENSG00000132005.494.0020055.782100.752802.250901.66110HepG2SMN1
RFX1ENSG00000132005.4191.0760087.734101.122807.149906.20830HepG2SRSF5
RFX1ENSG00000132005.4113.2436053.006401.095104.274102.87400HepG2STIP1
RFX1ENSG00000132005.4184.4341099.783700.886104.628903.86180HepG2SUCLG1
RFX1ENSG00000132005.496.9151052.199300.892602.719502.22250HepG2TIAL1
RFX1ENSG00000132005.4118.3595052.652601.168505.529204.78370HepG2TRIM56
RFX1ENSG00000132005.4112.1828054.548001.040202.761001.66630HepG2XPO5
RFX1ENSG00000132005.4547.87010371.738400.559405.522904.76410K562AGGF1
RFX1ENSG00000132005.4551.73590408.516200.433503.103302.04800K562AKAP8
RFX1ENSG00000132005.4517.05800386.818500.418602.744302.09380K562AKAP8L
RFX1ENSG00000132005.4228.74160136.584700.743803.307901.84690K562BCCIP
RFX1ENSG00000132005.4273.83790132.026701.052408.210706.52740K562BCLAF1
RFX1ENSG00000132005.4315.45770181.771700.795203.182402.03540K562CCAR1
RFX1ENSG00000132005.4179.61540112.970700.668902.810401.51950K562CIRBP
RFX1ENSG00000132005.4513.68580387.985700.404802.699501.60680K562CPEB4
RFX1ENSG00000132005.4226.49260100.162001.177003.549502.33110K562CSTF2
RFX1ENSG00000132005.4284.63390137.694601.047504.878903.65130K562EFTUD2
RFX1ENSG00000132005.44.3447050.13000-3.528308.801007.39180K562G3BP2
RFX1ENSG00000132005.4227.63980144.182900.658803.071602.23650K562GPKOW
RFX1ENSG00000132005.4311.57090172.723000.851003.715003.03660K562HNRNPC
RFX1ENSG00000132005.4185.36290273.50250-0.561202.573401.80390K562HSPD1
RFX1ENSG00000132005.4263.70240105.525401.321202.787801.75880K562IGF2BP2
RFX1ENSG00000132005.4176.92380110.781800.675303.069402.18280K562MAGOH
RFX1ENSG00000132005.4202.85270110.538600.875802.165801.35950K562MATR3
RFX1ENSG00000132005.4179.13350107.640500.734703.617102.86970K562PTBP1
RFX1ENSG00000132005.4318.25910543.24960-0.771407.912406.02640K562PUM1
RFX1ENSG00000132005.4215.24220103.148101.061103.523902.56990K562RBM22
RFX1ENSG00000132005.4382.90340211.787100.854303.250301.79700K562SFPQ
RFX1ENSG00000132005.4217.10850134.097400.695002.474601.51710K562SRFBP1
RFX1ENSG00000132005.4194.81960105.537200.884303.403402.62510K562SRSF1
RFX1ENSG00000132005.4211.48190105.932800.997305.090803.58830K562SRSF4
RFX1ENSG00000132005.4188.1798099.705600.916304.911003.43710K562SRSF5
RFX1ENSG00000132005.4188.32510301.53220-0.679104.413303.37040K562SYNCRIP
RFX1ENSG00000132005.411.2300049.20920-2.131604.619802.55590K562TAF15
RFX1ENSG00000132005.4284.77650106.781201.415104.409303.51010K562TARDBP
RFX1ENSG00000132005.4250.86940103.010201.2840010.260108.56400K562TIA1
RFX1ENSG00000132005.4193.93340101.153100.938904.640403.15860K562TRA2A
RFX1ENSG00000132005.424.4343050.19150-1.038502.122701.41950K562U2AF2
RFX1ENSG00000132005.4302.39120403.30380-0.415503.013502.13100K562WDR43
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for RFX1 is not available on ENCORE database.






No RBPs affect the alternative splcing events of RFX1 on ENCORE database.





The Knockdown/knockout RNA-Seq assay for RFX1 is not avaliable on ENCORE database.