RAB4B

General Information

Gene Name : RAB4B
Gene ID : ENSG00000167578.17
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: RAB4B)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	RAB4B	ENSG00000167578.17	2.21	9.30	5.76	ENCSR000AEF
HepG2	RAB4B	ENSG00000167578.17	4.96	1.71	3.33	ENCSR985KAT
K562	RAB4B	ENSG00000167578.17	10.55	6.03	8.29	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for RAB4B is not avaliable on ENCORE database.

Proteins bound to RNA

RAB4B RNA is bound by 3 proteins.

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eCLIP assay for RAB4B is not avaliable on ENCORE database.

3 proteins are bound to RAB4B RNA:

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Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr19	41286003	41286076	+	3'-UTR,CDS,intron-Distal,intron-Proximal	3.86059	7.30031	K562	AQR
chr19	41286245	41286309	+	3'-UTR,CDS,intron-Distal,intron-Proximal	4.52731	4.13847	K562	AQR
chr19	41286373	41286441	+	3'-UTR,CDS,intron-Distal,intron-Proximal	4.60770	4.02817	HepG2	PRPF8
chr19	41284513	41284627	+	intron-Distal	4.32590	3.86417	HepG2	PRPF4
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 4 of 4 entries

eCLIP assay for RAB4B is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for RAB4B is not available on ENCORE database.
72 RBPs can affect the levels of RAB4B.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for RAB4B is not available on ENCORE database.

72 RBPs can affect the gene expression of RAB4B :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
RAB4B	ENSG00000167578.12	308.63290	96.02900	1.68430	14.18010	12.92010	HepG2	DDX6
RAB4B	ENSG00000167578.12	285.37060	92.27390	1.62870	13.54300	12.29940	HepG2	EIF2S1
RAB4B	ENSG00000167578.12	261.20580	97.27890	1.42490	13.34220	11.94510	K562	EIF2S2
RAB4B	ENSG00000167578.12	175.94050	44.40060	1.98630	12.63370	11.41850	HepG2	HNRNPLL
RAB4B	ENSG00000167578.12	280.42410	97.00980	1.53130	12.25690	10.94910	HepG2	IGF2BP2
RAB4B	ENSG00000167578.12	214.28470	88.67620	1.27280	10.54880	9.65360	HepG2	ZNF622
RAB4B	ENSG00000167578.12	306.82650	138.96360	1.14260	9.84740	9.00650	HepG2	RBM22
RAB4B	ENSG00000167578.12	145.56160	48.88750	1.57400	9.22040	8.40100	HepG2	TIAL1
RAB4B	ENSG00000167578.12	237.15310	110.52200	1.10140	7.24940	6.36150	HepG2	ACO1
RAB4B	ENSG00000167578.12	408.32600	233.29740	0.80750	6.76940	5.71120	K562	AKAP8L
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 77 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for RAB4B is not available on ENCORE database.

7 RBPs can affect the splicing of RAB4B :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	2ndExonStart	2ndExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
RI	RAB4B	ENSG00000167578.12	chr19	+	41285923	41286404			41285923	41286004	41286289	41286404	-0.31400	0.00029	0.02791	excluded	K562	NONO
RI	RAB4B	ENSG00000167578.12	chr19	+	41285923	41286404			41285923	41286004	41286289	41286404	-0.21600	0.00066	0.08727	excluded	K562	TIA1
MXE	RAB4B	ENSG00000167578.12	chr19	+	41289682	41289745	41289825	41289980	41286289	41286404	41292569	41292665	-0.69800	0.00095	0.01499	2included	HepG2	SFPQ
RI	RAB4B	ENSG00000167578.12	chr19	+	41285923	41286404			41285923	41286004	41286289	41286404	-0.20700	0.00209	0.03803	excluded	K562	PTBP1
MXE	RAB4B	ENSG00000167578.12	chr19	+	41289682	41289745	41289825	41289980	41286289	41286404	41292569	41292665	0.45500	0.00213	0.04988	1included	K562	PPIL4
RI	RAB4B	ENSG00000167578.12	chr19	+	41285923	41286404			41285923	41286004	41286289	41286404	0.29300	0.00392	0.03585	included	HepG2	TAF15
RI	RAB4B	ENSG00000167578.12	chr19	+	41285923	41286404			41285923	41286004	41286289	41286404	0.27500	0.00821	0.08067	included	HepG2	PCBP1

Showing 1 to 7 of 7 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

RAB4B

General Information

Functions

Localization

Domains (AlphaFold: RAB4B)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for RAB4B is not avaliable on ENCORE database.

3 proteins are bound to RAB4B RNA:

eCLIP assay for RAB4B is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for RAB4B is not available on ENCORE database.

72 RBPs can affect the gene expression of RAB4B :

The Knockdown/knockout RNA-Seq assay for RAB4B is not available on ENCORE database.

7 RBPs can affect the splicing of RAB4B :

The Knockdown/knockout RNA-Seq assay for RAB4B is not avaliable on ENCORE database.