RAB4B

General Information

Gene Name       : RAB4B
Gene ID             : ENSG00000167578.17
Essential Gene : No

Functions

Localization

Domains (AlphaFold: RAB4B)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878RAB4BENSG00000167578.172.219.305.76ENCSR000AEF
HepG2RAB4BENSG00000167578.174.961.713.33ENCSR985KAT
K562RAB4BENSG00000167578.1710.556.038.29ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for RAB4B is not avaliable on ENCORE database.



Proteins bound to RNA
  • RAB4B RNA is bound by 3 proteins.  







eCLIP assay for RAB4B is not avaliable on ENCORE database.





3 proteins are bound to RAB4B RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr194128600341286076+3'-UTR,CDS,intron-Distal,intron-Proximal3.860597.30031K562AQR
chr194128637341286441+3'-UTR,CDS,intron-Distal,intron-Proximal4.607704.02817HepG2PRPF8
chr194128624541286309+3'-UTR,CDS,intron-Distal,intron-Proximal4.527314.13847K562AQR
chr194128451341284627+intron-Distal4.325903.86417HepG2PRPF4
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for RAB4B is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for RAB4B is not available on ENCORE database.

  • 72 RBPs can affect the levels of RAB4B.  








The Knockdown/knockout RNA-Seq assay for RAB4B is not available on ENCORE database.





72 RBPs can affect the gene expression of RAB4B :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
RAB4BENSG00000167578.12237.15310110.522001.101407.249406.36150HepG2ACO1
RAB4BENSG00000167578.12204.30240116.667100.808203.094702.53630HepG2AKAP1
RAB4BENSG00000167578.12165.6755086.983800.929403.850702.62690HepG2AKAP8
RAB4BENSG00000167578.12179.5253096.524000.895103.888402.96450HepG2ASCC1
RAB4BENSG00000167578.12205.79800144.799600.507102.154501.53520HepG2AUH
RAB4BENSG00000167578.1286.0104044.704500.944002.562101.98330HepG2BOP1
RAB4BENSG00000167578.12176.7099091.707100.946204.177403.23850HepG2CIRBP
RAB4BENSG00000167578.12183.3491068.076501.429306.745605.55290HepG2CNOT7
RAB4BENSG00000167578.1281.3227041.041900.986502.526901.86430HepG2CPSF6
RAB4BENSG00000167578.12105.4580060.729200.796102.339901.70910HepG2DDX21
RAB4BENSG00000167578.12225.92740111.740701.015605.334104.49090HepG2DDX3X
RAB4BENSG00000167578.12136.9380078.800600.797102.111801.42670HepG2DDX55
RAB4BENSG00000167578.12308.6329096.029001.6843014.1801012.92010HepG2DDX6
RAB4BENSG00000167578.1293.4149045.120801.049803.633502.83350HepG2DNAJC21
RAB4BENSG00000167578.12285.3706092.273901.6287013.5430012.29940HepG2EIF2S1
RAB4BENSG00000167578.12222.20670101.953601.123906.189705.23780HepG2EIF4A3
RAB4BENSG00000167578.12228.17850166.265200.456601.919701.39960HepG2ETF1
RAB4BENSG00000167578.12160.24670102.927100.638602.143201.53050HepG2FXR1
RAB4BENSG00000167578.12166.1745095.448300.799803.145102.43780HepG2G3BP1
RAB4BENSG00000167578.12107.8191046.526201.212403.993303.23670HepG2GPKOW
RAB4BENSG00000167578.12103.3134045.553301.181302.473701.86020HepG2HNRNPA1
RAB4BENSG00000167578.12122.5011050.677301.273304.838103.93970HepG2HNRNPC
RAB4BENSG00000167578.12175.9405044.400601.9863012.6337011.41850HepG2HNRNPLL
RAB4BENSG00000167578.12280.4241097.009801.5313012.2569010.94910HepG2IGF2BP2
RAB4BENSG00000167578.12182.8460091.084901.005202.567501.62200HepG2IGF2BP3
RAB4BENSG00000167578.1298.5745047.445201.054903.056001.86190HepG2LARP7
RAB4BENSG00000167578.12157.93140102.963300.617101.991901.43110HepG2MAGOH
RAB4BENSG00000167578.1241.97870103.52980-1.302304.218003.45520HepG2MATR3
RAB4BENSG00000167578.12178.08820105.960500.749002.793602.15780HepG2NCBP2
RAB4BENSG00000167578.12132.1869062.241201.086503.732202.68860HepG2PABPC1
RAB4BENSG00000167578.12172.9964094.328200.874903.375302.58300HepG2PABPC4
RAB4BENSG00000167578.12184.43310118.031200.643802.799602.24920HepG2PTBP1
RAB4BENSG00000167578.12160.6254078.793501.027504.765604.00930HepG2PUF60
RAB4BENSG00000167578.12162.8138083.579800.961904.407003.57070HepG2PUM2
RAB4BENSG00000167578.12168.93490112.571000.585502.519001.92360HepG2PUS1
RAB4BENSG00000167578.12227.37600127.839800.830604.522403.75120HepG2QKI
RAB4BENSG00000167578.12306.82650138.963601.142609.847409.00650HepG2RBM22
RAB4BENSG00000167578.12125.1884046.462201.429904.904203.48560HepG2RCC2
RAB4BENSG00000167578.12100.6303048.926901.040303.173202.16490HepG2RPS10
RAB4BENSG00000167578.12105.1628052.760100.995002.656201.87080HepG2RPS2
RAB4BENSG00000167578.12130.9420068.418100.936403.238502.37450HepG2RPS3A
RAB4BENSG00000167578.1297.1585050.785300.935802.888101.90840HepG2SMNDC1
RAB4BENSG00000167578.12216.22680156.948400.462201.893801.45560HepG2SRFBP1
RAB4BENSG00000167578.1259.26540128.27090-1.113904.758504.18110HepG2SRSF1
RAB4BENSG00000167578.12196.75920136.258200.530002.274601.79940HepG2SSB
RAB4BENSG00000167578.12134.0978088.475100.599802.023601.47540HepG2SUCLG1
RAB4BENSG00000167578.1276.84980115.28630-0.585101.770301.30250HepG2TAF15
RAB4BENSG00000167578.12145.5616048.887501.574009.220408.40100HepG2TIAL1
RAB4BENSG00000167578.1287.3855049.355500.824101.803801.32890HepG2TRIM56
RAB4BENSG00000167578.12131.8188080.629700.709102.792502.09030HepG2UPF1
RAB4BENSG00000167578.12117.4478061.285500.938303.273502.07090HepG2XPO5
RAB4BENSG00000167578.12214.2847088.676201.2728010.548809.65360HepG2ZNF622
RAB4BENSG00000167578.12320.61160224.203500.515903.194902.59280K562AGGF1
RAB4BENSG00000167578.12408.32600233.297400.807506.769405.71120K562AKAP8L
RAB4BENSG00000167578.12139.47610264.78360-0.924804.843904.10670K562AQR
RAB4BENSG00000167578.12237.77290148.294900.681002.874801.56790K562CIRBP
RAB4BENSG00000167578.12252.50650155.544800.698903.076501.97390K562DDX3X
RAB4BENSG00000167578.12261.2058097.278901.4249013.3422011.94510K562EIF2S2
RAB4BENSG00000167578.1237.5264085.47020-1.187503.471202.66140K562G3BP2
RAB4BENSG00000167578.12220.89870129.637900.768803.669902.80340K562GRSF1
RAB4BENSG00000167578.12162.78400101.997800.674302.554901.78730K562HSPD1
RAB4BENSG00000167578.12253.49500138.562700.871302.691701.68320K562IGF2BP2
RAB4BENSG00000167578.12351.76550236.999800.569603.294002.09120K562MAK16
RAB4BENSG00000167578.12290.57900151.215600.942203.694002.50300K562PABPN1
RAB4BENSG00000167578.1244.07500132.56420-1.588704.431203.37950K562PCBP3
RAB4BENSG00000167578.1237.65000101.66830-1.433103.691702.76000K562POLR2G
RAB4BENSG00000167578.12131.4455085.438800.621402.121801.40740K562PPIG
RAB4BENSG00000167578.12153.6531075.373201.027504.276803.11810K562PSIP1
RAB4BENSG00000167578.12337.01870231.342300.542703.063602.49700K562PUS1
RAB4BENSG00000167578.12335.41360225.428700.573203.763203.08740K562RBM15
RAB4BENSG00000167578.12133.7434068.748700.960003.974102.78340K562RCC2
RAB4BENSG00000167578.1251.6021088.88380-0.784502.262701.49150K562SF3B4
RAB4BENSG00000167578.12219.47050130.902200.745403.619602.38610K562SRSF5
RAB4BENSG00000167578.12221.95450140.168900.663002.160901.53080K562TARDBP
RAB4BENSG00000167578.12208.31210135.221500.623302.363101.61390K562TIA1
RAB4BENSG00000167578.1232.7255085.57220-1.386704.971403.89660K562U2AF2
RAB4BENSG00000167578.12191.08330298.25580-0.642303.796302.75480K562ZC3H8
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for RAB4B is not available on ENCORE database.





7 RBPs can affect the splicing of RAB4B :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
RIRAB4BENSG00000167578.12chr19+412859234128640441285923412860044128628941286404-0.314000.000290.02791excludedK562NONO
RIRAB4BENSG00000167578.12chr19+412859234128640441285923412860044128628941286404-0.216000.000660.08727excludedK562TIA1
RIRAB4BENSG00000167578.12chr19+4128592341286404412859234128600441286289412864040.275000.008210.08067includedHepG2PCBP1
RIRAB4BENSG00000167578.12chr19+4128592341286404412859234128600441286289412864040.293000.003920.03585includedHepG2TAF15
RIRAB4BENSG00000167578.12chr19+412859234128640441285923412860044128628941286404-0.207000.002090.03803excludedK562PTBP1
MXERAB4BENSG00000167578.12chr19+4128968241289745412898254128998041286289412864044129256941292665-0.698000.000950.014992includedHepG2SFPQ
MXERAB4BENSG00000167578.12chr19+41289682412897454128982541289980412862894128640441292569412926650.455000.002130.049881includedK562PPIL4

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for RAB4B is not avaliable on ENCORE database.