RAB3GAP2

General Information

Gene Name       : RAB3GAP2
Gene ID             : ENSG00000118873.15
Essential Gene : No

Functions

Localization

Domains (AlphaFold: RAB3GAP2)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878RAB3GAP2ENSG00000118873.1522.9820.8921.94ENCSR000AEF
HepG2RAB3GAP2ENSG00000118873.1512.1712.5912.38ENCSR985KAT
K562RAB3GAP2ENSG00000118873.1520.3021.6921.00ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for RAB3GAP2 is not avaliable on ENCORE database.



Proteins bound to RNA
  • RAB3GAP2 RNA is bound by 35 proteins.  







eCLIP assay for RAB3GAP2 is not avaliable on ENCORE database.





35 proteins are bound to RAB3GAP2 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr1220384112220384205-3'-UTR,CDS,intron-Distal,intron-Proximal3.665308.81620HepG2BCLAF1
chr1220384094220384188-3'-UTR,CDS,intron-Distal,intron-Proximal5.3321811.01364K562DDX24
chr1220323696220323768-3'-UTR,intron-Distal4.443245.66560K562TIA1
chr1220323820220323861-3'-UTR,intron-Distal5.2793111.17322K562PUM2
chr1220321657220321803-3'-UTR,intron-Distal3.326575.36888K562KHSRP
chr1220379247220379303-3'-UTR,CDS,intron-Distal,intron-Proximal3.162095.27152HepG2BCLAF1
chr1220324487220324525-3'-UTR,intron-Distal,intron-Proximal3.477283.00062K562PUM2
chr1220384166220384244-3'-UTR,CDS,intron-Distal,intron-Proximal4.3623610.83950K562EFTUD2
chr1220323694220323767-3'-UTR,intron-Distal4.4754712.80610K562PUM2
chr1220384187220384268-3'-UTR,CDS,intron-Distal,intron-Proximal3.794535.37841K562SF3B4
chr1220384025220384152-3'-UTR,CDS,intron-Distal,intron-Proximal3.9723513.51589K562KHSRP
chr1220321650220321743-3'-UTR,intron-Distal5.97129400.00000K562PUM2
chr1220383785220383845-3'-UTR,CDS,intron-Distal,intron-Proximal3.278413.80334HepG2U2AF2
chr1220384114220384166-3'-UTR,CDS,intron-Distal,intron-Proximal3.504255.81784K562EFTUD2
chr1220384055220384161-3'-UTR,CDS,intron-Distal,intron-Proximal3.409947.26597K562PRPF8
chr1220323914220323974-3'-UTR,intron-Distal4.392943.54010K562UPF1
chr1220445697220445768-5'-UTR,intron-Distal,intron-Proximal3.691075.71420K562RBM15
chr1220445564220445740-5'-UTR,CDS,intron-Distal,intron-Proximal4.0134720.41223K562DDX24
chr1220445640220445697-5'-UTR,CDS,intron-Distal,intron-Proximal3.518884.51666K562RBM15
chr1220445650220445755-5'-UTR,CDS,intron-Distal,intron-Proximal3.098038.35651HepG2NCBP2
chr1220363731220363748-CDS,intron-Distal3.382604.70209K562YBX3
chr1220355622220355687-CDS,intron-Distal3.452036.74947HepG2BCLAF1
chr1220358994220359036-CDS,intron-Distal,intron-Proximal4.080345.79432HepG2BCLAF1
chr1220327378220327463-CDS,intron-Distal,intron-Proximal3.888534.77518HepG2U2AF2
chr1220369598220369663-CDS,intron-Distal4.980336.13315HepG2BCLAF1
chr1220356205220356230-CDS,intron-Distal3.265975.19797K562YBX3
chr1220340844220340901-CDS,intron-Distal4.187847.16838HepG2BCLAF1
chr1220384296220384345-CDS,intron-Distal,intron-Proximal4.2373211.19852K562DDX24
chr1220335581220335656-CDS,intron-Distal,intron-Proximal4.203226.10653K562SF3B4
chr1220340901220340980-CDS,intron-Distal4.881365.03746HepG2BCLAF1
chr1220363416220363486-CDS,intron-Distal4.113903.68241HepG2G3BP1
chr1220340679220340731-CDS,intron-Distal5.242597.04013HepG2BCLAF1
chr1220363838220363864-CDS,intron-Distal,intron-Proximal3.372824.34695HepG2BCLAF1
chr1220369684220369736-CDS,intron-Distal5.070617.04013HepG2BCLAF1
chr1220363429220363489-CDS,intron-Distal,intron-Proximal3.977448.08603HepG2BCLAF1
chr1220363718220363755-CDS,intron-Distal,intron-Proximal4.239254.67299K562DDX24
chr1220338071220338132-CDS,intron-Distal,intron-Proximal3.014903.83538K562BUD13
chr1220363418220363489-CDS,intron-Distal,intron-Proximal3.566507.29897K562DDX24
chr1220363092220363109-CDS,intron-Distal3.554104.09885HepG2BCLAF1
chr1220445563220445640-CDS,intron-Distal3.383113.04831K562RBM15
chr1220363405220363429-CDS,intron-Distal,intron-Proximal5.105656.58593HepG2BCLAF1
chr1220386226220386284-CDS,intron-Distal,intron-Proximal4.496787.97334HepG2BCLAF1
chr1220340843220340937-CDS,intron-Distal,intron-Proximal3.489648.38234K562UCHL5
chr1220331149220331199-CDS,intron-Distal4.062483.49332HepG2PPIG
chr1220356230220356274-CDS,intron-Distal,intron-Proximal3.542208.15573K562YBX3
chr1220387200220387265-CDS,intron-Distal5.2862810.65788K562YBX3
chr1220344256220344304-CDS,intron-Distal3.179685.58482K562YBX3
chr1220345309220345392-CDS,intron-Distal,intron-Proximal3.446824.51003HepG2PPIG
chr1220345981220346078-CDS,intron-Distal3.744184.80912HepG2PPIG
chr1220363717220363731-CDS,intron-Distal,intron-Proximal3.364344.47973K562YBX3
chr1220387196220387257-CDS,intron-Distal,intron-Proximal3.693596.28780K562DDX24
chr1220363479220363488-CDS,intron-Distal3.005873.06971K562YBX3
chr1220363405220363487-CDS,intron-Distal,intron-Proximal3.296584.89070K562UCHL5
chr1220384295220384340-CDS,intron-Distal,intron-Proximal3.966637.23562HepG2BCLAF1
chr1220406140220406205-CDS,intron-Distal,intron-Proximal3.6176710.52099K562DDX24
chr1220386226220386276-CDS,intron-Distal,intron-Proximal3.8342310.51333K562DDX24
chr1220387199220387270-CDS,intron-Distal4.026888.51432HepG2BCLAF1
chr1220445599220445654-CDS,intron-Distal3.473494.95207K562GEMIN5
chr1220368473220368512-CDS,intron-Distal,intron-Proximal3.539705.69590K562DDX24
chr1220375751220375922-intron-Distal,intron-Proximal3.275393.17919K562KHSRP
chr1220445182220445249-intron-Distal4.346748.88051HepG2PCBP2
chr1220383970220384031-intron-Distal4.213988.53087K562U2AF1
chr1220383968220384028-intron-Distal3.236283.61761K562DDX42
chr1220445148220445243-intron-Distal3.965503.33944K562MATR3
chr1220382304220382367-intron-Distal3.697493.14313K562SAFB
chr1220445385220445473-intron-Distal5.5636710.11308HepG2PCBP2
chr1220373893220373941-intron-Distal5.69642400.00000HepG2DKC1
chr1220340558220340634-intron-Distal,intron-Proximal3.699875.29272K562BUD13
chr1220338659220338709-intron-Distal4.553614.20763HepG2U2AF2
chr1220406019220406095-intron-Distal,intron-Proximal4.288114.21433K562PRPF8
chr1220340527220340600-intron-Distal,intron-Proximal4.893396.08021K562PRPF8
chr1220383965220384029-intron-Distal3.214617.13526K562U2AF2
chr1220358731220358834-intron-Distal4.173744.96658K562KHSRP
chr1220385733220385810-intron-Distal3.763023.06150K562KHSRP
chr1220428608220428679-intron-Distal4.059773.06015K562MATR3
chr1220379951220380044-intron-Distal3.127243.13706K562TAF15
chr1220338203220338262-intron-Distal,intron-Proximal4.527656.07567K562KHSRP
chr1220373962220373974-intron-Distal7.98632206.18447HepG2DKC1
chr1220373951220373962-intron-Distal6.45777400.00000HepG2DKC1
chr1220338572220338617-intron-Distal3.889803.25538K562KHSRP
chr1220373942220373951-intron-Distal6.18472400.00000HepG2DKC1
chr1220383990220384075-intron-Distal,intron-Proximal4.280454.00239HepG2KHSRP
chr1220383969220384032-intron-Distal3.837859.59205HepG2U2AF2
chr1220439872220439945-intron-Distal3.626483.13793K562SAFB
chr1220430236220430305-intron-Distal3.761063.04224HepG2SUGP2
chr1220338443220338572-intron-Distal3.779588.26817K562KHSRP
chr1220373974220374017-intron-Distal7.38034400.00000HepG2DKC1
chr1220406041220406119-intron-Distal,intron-Proximal4.275063.89294K562KHSRP
chr1220327405220327455-intron-Distal,intron-Proximal5.227755.90023K562SF3B4
chr1220383961220384051-intron-Distal,intron-Proximal3.674623.34442K562FUS
chr1220445178220445247-intron-Distal4.104684.08723K562HNRNPK
chr1220445141220445169-intron-Distal3.277173.15612HepG2PCBP2
chr1220379415220379475-intron-Distal,intron-Proximal3.950018.05068K562KHSRP
chr1220368265220368378-intron-Distal,intron-Proximal4.958626.45599K562PRPF8
chr1220340568220340635-intron-Distal,intron-Proximal5.8731111.02807K562AQR
chr1220430247220430309-intron-Distal3.903793.01445K562EXOSC5
chr1220445334220445385-intron-Distal3.907706.17312HepG2PCBP2
chr1220424430220424519-intron-Distal3.952445.50753K562QKI
chr1220332128220332216-intron-Distal4.250844.39969K562TARDBP
chr1220383973220384028-intron-Distal3.541085.32169K562EFTUD2
chr1220383831220383904-intron-Distal,intron-Proximal5.131577.81284HepG2RBM5
chr1220384059220384130-intron-Distal,intron-Proximal4.178154.00100K562TIA1
chr1220440204220440294-intron-Distal4.325384.30215K562SAFB2
chr1220445174220445257-intron-Distal3.4371310.24447K562PTBP1
chr1220417621220417660-intron-Distal3.651774.91037K562EXOSC5
chr1220383963220384027-intron-Distal3.211124.54867HepG2U2AF1
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for RAB3GAP2 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for RAB3GAP2 is not available on ENCORE database.

  • 56 RBPs can affect the levels of RAB3GAP2.  








The Knockdown/knockout RNA-Seq assay for RAB3GAP2 is not available on ENCORE database.





56 RBPs can affect the gene expression of RAB3GAP2 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
RAB3GAP2ENSG00000118873.112144.597101718.464400.319501.906301.45500HepG2AKAP1
RAB3GAP2ENSG00000118873.11658.946001103.14650-0.743405.168303.88230HepG2BCCIP
RAB3GAP2ENSG00000118873.111268.087401048.771600.273902.149201.46380HepG2CALR
RAB3GAP2ENSG00000118873.111216.00750964.560900.334102.828501.90250HepG2DDX24
RAB3GAP2ENSG00000118873.11742.25820936.14090-0.334802.416901.32750HepG2EIF2S2
RAB3GAP2ENSG00000118873.111073.800001502.31180-0.484503.583102.85790HepG2EIF4A3
RAB3GAP2ENSG00000118873.111123.449801406.08450-0.323701.949201.38650HepG2G3BP1
RAB3GAP2ENSG00000118873.11942.984601203.80330-0.352302.124101.55850HepG2GPKOW
RAB3GAP2ENSG00000118873.11845.522901041.52010-0.300801.968501.37280HepG2HNRNPC
RAB3GAP2ENSG00000118873.11810.273501034.63420-0.352604.008403.28980HepG2HNRNPU
RAB3GAP2ENSG00000118873.11853.762601056.84460-0.307903.688502.85380HepG2ILF2
RAB3GAP2ENSG00000118873.111357.542201727.86140-0.348002.000101.30160HepG2LARP4
RAB3GAP2ENSG00000118873.111220.899401560.67670-0.354202.330701.74710HepG2NCBP2
RAB3GAP2ENSG00000118873.111047.755001382.99410-0.400504.493303.52350HepG2NOL12
RAB3GAP2ENSG00000118873.11951.021901320.19820-0.473203.850003.15980HepG2PUF60
RAB3GAP2ENSG00000118873.111940.141401401.459400.4691011.0852010.06480HepG2PUM1
RAB3GAP2ENSG00000118873.111640.451301379.454400.249902.139501.37250HepG2RBM15
RAB3GAP2ENSG00000118873.111939.500401653.749400.229802.145901.67460HepG2RBM22
RAB3GAP2ENSG00000118873.11997.204101286.34930-0.367302.869102.17480HepG2RPLP0
RAB3GAP2ENSG00000118873.11773.85470921.38750-0.251702.019501.45540HepG2SAFB2
RAB3GAP2ENSG00000118873.111993.821701508.454900.402406.842306.17950HepG2SRSF1
RAB3GAP2ENSG00000118873.111510.283901227.202600.299303.762503.14090HepG2SRSF9
RAB3GAP2ENSG00000118873.11705.097201005.34060-0.511805.701105.03320HepG2TIAL1
RAB3GAP2ENSG00000118873.111753.749201365.239700.361202.339301.57460HepG2UBE2L3
RAB3GAP2ENSG00000118873.11441.92790637.91590-0.529602.918502.14130HepG2UCHL5
RAB3GAP2ENSG00000118873.111026.636201222.27280-0.251602.586001.90720HepG2UPF1
RAB3GAP2ENSG00000118873.11627.58140988.99220-0.656203.588602.43530HepG2UPF2
RAB3GAP2ENSG00000118873.11578.182901062.90340-0.878407.026305.88280HepG2XRN2
RAB3GAP2ENSG00000118873.113131.767903769.70740-0.267504.206503.53220K562AGGF1
RAB3GAP2ENSG00000118873.113272.393403922.52440-0.261402.205101.62030K562AKAP8L
RAB3GAP2ENSG00000118873.113555.669204505.09480-0.341404.429602.89810K562CCDC124
RAB3GAP2ENSG00000118873.112830.326803430.73760-0.277603.824102.51560K562CPEB4
RAB3GAP2ENSG00000118873.111930.461402386.97420-0.306202.853701.79480K562DDX3X
RAB3GAP2ENSG00000118873.111545.307202022.80090-0.388503.155102.17620K562EFTUD2
RAB3GAP2ENSG00000118873.111931.712602593.87830-0.425207.141106.06460K562EIF2S2
RAB3GAP2ENSG00000118873.111628.272402165.93670-0.411602.883001.82530K562EIF3D
RAB3GAP2ENSG00000118873.111991.491102493.87820-0.324502.822901.99370K562EIF4A3
RAB3GAP2ENSG00000118873.111721.346602418.54000-0.490605.631804.39790K562FIP1L1
RAB3GAP2ENSG00000118873.112251.851801816.288100.310002.784601.43910K562FUS
RAB3GAP2ENSG00000118873.112197.652302593.54200-0.239002.230401.67640K562FXR1
RAB3GAP2ENSG00000118873.113452.957302630.078500.392602.509601.84230K562G3BP2
RAB3GAP2ENSG00000118873.112763.636902345.517900.236602.499801.42050K562GLRX3
RAB3GAP2ENSG00000118873.112345.243103456.74900-0.559706.181505.04650K562GRSF1
RAB3GAP2ENSG00000118873.111394.072301989.33450-0.513004.554103.33700K562HNRNPM
RAB3GAP2ENSG00000118873.112624.374703278.95540-0.321302.830402.02560K562HSPD1
RAB3GAP2ENSG00000118873.112326.293203196.79880-0.458606.026204.76790K562MAGOH
RAB3GAP2ENSG00000118873.111427.486101823.78240-0.353502.781601.35440K562PHF6
RAB3GAP2ENSG00000118873.111951.166002745.59450-0.492805.516804.29350K562PPIG
RAB3GAP2ENSG00000118873.111473.576701968.41480-0.417703.663502.80020K562PRPF8
RAB3GAP2ENSG00000118873.111167.652901674.85580-0.520405.654004.28950K562PSIP1
RAB3GAP2ENSG00000118873.112087.389703105.87470-0.573309.653708.46790K562PTBP1
RAB3GAP2ENSG00000118873.114068.685005042.92020-0.309702.773001.95610K562PUF60
RAB3GAP2ENSG00000118873.114345.505905255.59060-0.274303.954102.80230K562PUM2
RAB3GAP2ENSG00000118873.113329.460903790.31330-0.187001.812401.31460K562RBM15
RAB3GAP2ENSG00000118873.112056.818002978.27700-0.534106.860205.46810K562RBM22
RAB3GAP2ENSG00000118873.111784.700102424.44020-0.442004.035602.79690K562RPS3
RAB3GAP2ENSG00000118873.111153.441501448.67610-0.328802.569301.59170K562SRFBP1
RAB3GAP2ENSG00000118873.112439.523903044.76930-0.319703.378602.60320K562SRSF1
RAB3GAP2ENSG00000118873.111846.662502340.51220-0.341903.469702.27270K562SRSF4
RAB3GAP2ENSG00000118873.112031.941503081.55560-0.600807.733306.47920K562TARDBP
RAB3GAP2ENSG00000118873.112453.254802972.49510-0.277002.757301.94170K562TIA1
RAB3GAP2ENSG00000118873.112227.621102633.05340-0.241202.249001.52550K562U2AF2
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for RAB3GAP2 is not available on ENCORE database.





11 RBPs can affect the splicing of RAB3GAP2 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SERAB3GAP2ENSG00000118873.11chr1-220375617220375716220369591220369740220379248220379348-0.128000.000000.00032excludedK562AKAP8L
SERAB3GAP2ENSG00000118873.11chr1-220357377220357505220356059220356273220358992220359083-0.137000.007670.07402excludedHepG2U2AF2
SERAB3GAP2ENSG00000118873.11chr1-2204449692204450092204061402204062052204455642204457960.116000.002580.02714includedK562AQR
SERAB3GAP2ENSG00000118873.11chr1-220338074220338141220335539220335610220340634220340741-0.130000.000250.00381excludedK562AQR
SERAB3GAP2ENSG00000118873.11chr1-220358992220359083220357377220357505220363044220363109-0.083000.001600.01811excludedK562AQR
SERAB3GAP2ENSG00000118873.11chr1-220369591220369740220368639220368719220375617220375745-0.064000.003020.03081excludedK562AQR
SERAB3GAP2ENSG00000118873.11chr1-2203756172203757162203695912203697402203792482203793480.138000.000060.00417includedK562FXR1
SERAB3GAP2ENSG00000118873.11chr1-220375617220375716220369591220369740220379248220379348-0.152000.000000.00002excludedK562PUS1
SERAB3GAP2ENSG00000118873.11chr1-220375617220375716220369591220369740220379248220379348-0.170000.000620.01524excludedK562U2AF1
SERAB3GAP2ENSG00000118873.11chr1-220375617220375710220369591220369740220379248220379348-0.218000.000170.01882excludedK562HNRNPUL1
SERAB3GAP2ENSG00000118873.11chr1-220375617220375716220369591220369740220379248220379348-0.094000.000240.01159excludedK562UTP18
SERAB3GAP2ENSG00000118873.11chr1-220375617220375716220369591220369740220379248220379348-0.230000.000080.00240excludedK562U2AF2
SERAB3GAP2ENSG00000118873.11chr1-220375617220375716220369591220369740220379248220379348-0.096000.000940.02620excludedK562RBM15
SERAB3GAP2ENSG00000118873.11chr1-220375617220375716220369591220369740220379248220379348-0.182000.000000.00001excludedK562AGGF1
SERAB3GAP2ENSG00000118873.11chr1-2204449692204450092204061402204062052204455642204457960.194000.007270.09225includedK562HNRNPC
A3SSRAB3GAP2ENSG00000118873.11chr1-2203311432203312712203311432203312182203327272203327630.053000.000680.00491longerK562AQR
A3SSRAB3GAP2ENSG00000118873.11chr1-2203459782203461512203459782203460842203555982203556960.137000.000000.00000longerK562AQR
A3SSRAB3GAP2ENSG00000118873.11chr1-2203245972203247852203245972203247482203249472203251060.080000.000000.00000longerK562AQR
A3SSRAB3GAP2ENSG00000118873.11chr1-2203871972203873422203871972203873212204061402204062050.134000.000000.00001longerK562AQR
A3SSRAB3GAP2ENSG00000118873.11chr1-2203862282203863902203862282203863102203871972203873420.054000.001770.01154longerK562AQR
A3SSRAB3GAP2ENSG00000118873.11chr1-2203273092203274742203273092203273992203306112203308530.151000.000000.00000longerK562AQR
A3SSRAB3GAP2ENSG00000118873.11chr1-2203837292203838562203837292203838312203841422203842180.100000.000780.00554longerK562AQR
A3SSRAB3GAP2ENSG00000118873.11chr1-2203589922203591072203589922203590832203630442203631090.234000.000000.00000longerK562AQR
RIRAB3GAP2ENSG00000118873.11chr1-2203841812203843442203841812203842182203842962203843440.068000.001110.00815includedK562PUS1
MXERAB3GAP2ENSG00000118873.11chr1-2203589922203590832203630442203631092203573772203575052203634052203634880.135000.004860.035041includedK562AQR
MXERAB3GAP2ENSG00000118873.11chr1-2203695912203697402203756172203757452203686392203687192203792482203793480.066000.001570.013501includedK562AQR
MXERAB3GAP2ENSG00000118873.11chr1-2203695912203697402203756172203757922203686392203687192203792482203793480.052000.003390.025921includedK562AQR
MXERAB3GAP2ENSG00000118873.11chr1-2203355392203356102203380742203381412203327272203327632203406342203407410.195000.005160.064341includedK562HNRNPUL1

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for RAB3GAP2 is not avaliable on ENCORE database.