PTCD2

General Information

Gene Name       : PTCD2
Gene ID             : ENSG00000049883.14
Essential Gene : No

Functions

Localization

Domains (AlphaFold: PTCD2)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878PTCD2ENSG00000049883.147.848.168.00ENCSR000AEF
HepG2PTCD2ENSG00000049883.144.106.605.35ENCSR985KAT
K562PTCD2ENSG00000049883.149.829.859.84ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for PTCD2 is not avaliable on ENCORE database.



Proteins bound to RNA

  • NO known proteins bind on PTCD2 RNA with finished eCLIP experiments on ENCORE database.





eCLIP assay for PTCD2 is not avaliable on ENCORE database.






NO known proteins are bound to PTCD2 RNA with finished eCLIP experiments on ENCORE database.





eCLIP assay for PTCD2 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for PTCD2 is not available on ENCORE database.

  • 63 RBPs can affect the levels of PTCD2.  








The Knockdown/knockout RNA-Seq assay for PTCD2 is not available on ENCORE database.





63 RBPs can affect the gene expression of PTCD2 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
PTCD2ENSG00000049883.10189.46110133.337500.506702.230201.62350HepG2CKAP4
PTCD2ENSG00000049883.1071.11670124.60230-0.809102.582902.00980HepG2EIF2S1
PTCD2ENSG00000049883.10212.83390137.696000.628102.457301.85330HepG2EIF4A3
PTCD2ENSG00000049883.10178.11410128.406300.472001.900901.38940HepG2HNRNPU
PTCD2ENSG00000049883.10195.61140131.004000.578302.058801.46730HepG2IGF2BP2
PTCD2ENSG00000049883.10240.04710138.990900.788203.799203.03070HepG2MAGOH
PTCD2ENSG00000049883.10226.26310139.766700.694902.799202.16500HepG2MATR3
PTCD2ENSG00000049883.10110.85160176.59640-0.671802.999202.20560HepG2NOL12
PTCD2ENSG00000049883.10194.12450129.868800.579802.381201.86730HepG2PTBP1
PTCD2ENSG00000049883.10162.40970105.097900.627802.092001.47210HepG2SF3B1
PTCD2ENSG00000049883.10208.04340116.942500.831002.635201.87350HepG2SNRNP70
PTCD2ENSG00000049883.10324.44370141.130901.2008011.3029010.48690HepG2SRSF1
PTCD2ENSG00000049883.10290.69900211.389400.459502.452101.96360HepG2SSB
PTCD2ENSG00000049883.1077.16010125.88540-0.706202.709802.14940HepG2TRIM56
PTCD2ENSG00000049883.10191.02030117.257700.703903.201102.56530HepG2UTP3
PTCD2ENSG00000049883.10305.26830479.71170-0.652103.578602.42550K562AKAP8
PTCD2ENSG00000049883.10287.24400454.31190-0.661403.998303.21070K562AKAP8L
PTCD2ENSG00000049883.10248.66070572.73320-1.2037013.5293012.37120K562AQR
PTCD2ENSG00000049883.10279.15180395.37260-0.502203.548502.45530K562BCLAF1
PTCD2ENSG00000049883.10181.79700283.16000-0.639303.162902.22930K562BOP1
PTCD2ENSG00000049883.10119.97500192.61060-0.683002.983001.88250K562CCAR1
PTCD2ENSG00000049883.10310.82350466.11790-0.584604.166402.58050K562CIRBP
PTCD2ENSG00000049883.10283.86430510.15610-0.845704.584003.17240K562CNOT7
PTCD2ENSG00000049883.10181.70240301.09540-0.728604.363203.37950K562CPSF6
PTCD2ENSG00000049883.10776.92640549.616400.499305.755904.86720K562DDX47
PTCD2ENSG00000049883.10209.00380311.19160-0.574302.873801.94380K562EFTUD2
PTCD2ENSG00000049883.10213.54920357.57910-0.743705.098603.92390K562FIP1L1
PTCD2ENSG00000049883.10195.86020306.32820-0.645303.546202.57360K562FMR1
PTCD2ENSG00000049883.10199.38580289.72080-0.539102.939501.55110K562FUS
PTCD2ENSG00000049883.10187.44750287.48410-0.617003.300202.43490K562GPKOW
PTCD2ENSG00000049883.10304.49510423.38050-0.475503.105601.96620K562HNRNPA1
PTCD2ENSG00000049883.10243.97390428.28500-0.811803.297601.93280K562HNRNPA2B1
PTCD2ENSG00000049883.10220.00970323.40990-0.555802.924602.31320K562HNRNPC
PTCD2ENSG00000049883.10193.81370288.77150-0.575302.986301.79660K562HNRNPF
PTCD2ENSG00000049883.10308.22550434.36070-0.494902.755001.52300K562HNRNPK
PTCD2ENSG00000049883.10364.06230496.72170-0.448302.951301.85640K562HNRNPL
PTCD2ENSG00000049883.10362.09540482.20370-0.413302.026701.32970K562KIF1C
PTCD2ENSG00000049883.10341.02330461.53470-0.436602.315201.36070K562MAK16
PTCD2ENSG00000049883.10175.53780280.61150-0.676803.837302.79330K562METAP2
PTCD2ENSG00000049883.10592.72200782.76270-0.401202.558001.47450K562MSI2
PTCD2ENSG00000049883.10289.23890423.59970-0.550404.711003.77160K562NSUN2
PTCD2ENSG00000049883.10188.71170374.72150-0.989604.206602.92060K562PABPN1
PTCD2ENSG00000049883.10576.36310801.25110-0.475303.834002.87800K562PUF60
PTCD2ENSG00000049883.10244.04590450.68600-0.885005.477104.74490K562PUS1
PTCD2ENSG00000049883.10294.90280439.01520-0.574003.275002.63830K562RBM15
PTCD2ENSG00000049883.10277.08320425.80090-0.619904.484803.38440K562RBM22
PTCD2ENSG00000049883.10476.34830308.503900.626603.930402.95290K562RPS19
PTCD2ENSG00000049883.10177.77510342.74620-0.947103.048401.76430K562SF1
PTCD2ENSG00000049883.10266.74920417.99220-0.648005.340104.23400K562SF3A3
PTCD2ENSG00000049883.10179.38000273.36350-0.607802.673501.71560K562SF3B1
PTCD2ENSG00000049883.10213.26180314.97190-0.562602.709701.86420K562SF3B4
PTCD2ENSG00000049883.10178.73980393.53930-1.138605.105203.26870K562SNRNP200
PTCD2ENSG00000049883.10165.01540250.75000-0.603602.696101.68920K562SRFBP1
PTCD2ENSG00000049883.10291.50550411.15830-0.496203.012801.90760K562SRSF5
PTCD2ENSG00000049883.10256.37830440.59130-0.781206.300905.19240K562TARDBP
PTCD2ENSG00000049883.10314.65210425.00180-0.433702.677301.87390K562TIA1
PTCD2ENSG00000049883.10175.80850278.89990-0.665703.246002.22640K562TIAL1
PTCD2ENSG00000049883.10300.04840417.06850-0.475102.719901.63920K562TRA2A
PTCD2ENSG00000049883.10194.57060296.24430-0.606503.240402.19830K562TRIM56
PTCD2ENSG00000049883.10345.72810461.04320-0.415303.053701.71740K562TROVE2
PTCD2ENSG00000049883.10160.75690303.19230-0.915405.798804.63660K562U2AF2
PTCD2ENSG00000049883.10308.50610449.15210-0.541904.400103.51550K562UPF1
PTCD2ENSG00000049883.10291.81230456.81380-0.646602.784201.48420K562UTP18
PTCD2ENSG00000049883.10273.94180384.32460-0.488502.946302.04360K562WDR3
PTCD2ENSG00000049883.10446.92310645.25530-0.529804.414303.28410K562ZC3H8
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for PTCD2 is not available on ENCORE database.





7 RBPs can affect the splicing of PTCD2 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SEPTCD2ENSG00000049883.10chr5+716308447163092371627084716272027163162071631712-0.272000.005680.08150excludedK562SF3B4
SEPTCD2ENSG00000049883.10chr5+716484677164858171638788716388637165402971655060-0.091000.006840.07864excludedK562PUS1
SEPTCD2ENSG00000049883.10chr5+716308447163092371627084716272027163162071631712-0.587000.000010.00037excludedK562U2AF2
MXEPTCD2ENSG00000049883.10chr5+7161799871618091716224387162256871616224716163367163162071631712-0.105000.012210.074332includedK562AQR
MXEPTCD2ENSG00000049883.10chr5+71627084716272027163084471630923716224387162256871631620716317120.255000.004060.047951includedK562U2AF2
MXEPTCD2ENSG00000049883.10chr5+7161799871618091716224387162256871616199716163367162708471627202-0.269000.019330.090252includedHepG2U2AF2
MXEPTCD2ENSG00000049883.10chr5+7161799871618091716224387162256871616199716163367162708471627202-0.214000.000390.028412includedK562PHF6
MXEPTCD2ENSG00000049883.10chr5+71622438716225687162708471627202716179987161809171630844716309230.116000.003700.070261includedK562PPIL4
MXEPTCD2ENSG00000049883.10chr5+71627084716272027163084471630923716224387162256871631620716317120.254000.000650.025321includedK562DHX30

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for PTCD2 is not avaliable on ENCORE database.