PMF1-BGLAP

General Information

Gene Name       : PMF1-BGLAP
Gene ID             : ENSG00000260238.6
Essential Gene : No

Functions

Localization

Domains (AlphaFold: PMF1-BGLAP)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878PMF1-BGLAPENSG00000260238.61.490.831.16ENCSR000AEF
HepG2PMF1-BGLAPENSG00000260238.66.881.884.38ENCSR985KAT
K562PMF1-BGLAPENSG00000260238.62.142.592.37ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for PMF1-BGLAP is not avaliable on ENCORE database.



Proteins bound to RNA
  • PMF1-BGLAP RNA is bound by 16 proteins.  







eCLIP assay for PMF1-BGLAP is not avaliable on ENCORE database.





16 proteins are bound to PMF1-BGLAP RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr1156203465156203523+3'-UTR,CDS,intron-Proximal3.178493.91443HepG2PPIG
chr1156206033156206096+3'-UTR,CDS,intron-Distal,intron-Proximal3.670446.50179HepG2BUD13
chr1156206226156206268+3'-UTR,CDS,intron-Distal3.419603.05161HepG2PPIG
chr1156206010156206096+3'-UTR,CDS,intron-Distal,intron-Proximal4.162637.30031K562AQR
chr1156206268156206322+3'-UTR,CDS,intron-Distal,intron-Proximal3.677918.96944HepG2PRPF8
chr1156202042156202125+3'-UTR,CDS,intron-Distal,intron-Proximal4.193166.11702K562SF3B4
chr1156206020156206099+3'-UTR,CDS,intron-Distal,intron-Proximal3.656994.84442HepG2SF3B4
chr1156206123156206180+3'-UTR,CDS,intron-Distal,intron-Proximal3.927923.35081HepG2G3BP1
chr1156205987156206126+3'-UTR,CDS,intron-Distal,intron-Proximal3.807827.84250HepG2AQR
chr1156206021156206108+3'-UTR,CDS,intron-Distal,intron-Proximal3.312705.72645K562BUD13
chr1156206270156206317+3'-UTR,CDS,intron-Distal,intron-Proximal4.370323.25089HepG2AQR
chr1156182830156182945+CDS3.355333.62863K562SRSF1
chr1156209648156209748+3'-UTR,intron-Distal3.108617.72462K562IGF2BP2
chr1156209362156209487+3'-UTR,CDS,intron-Distal4.267886.27044K562DDX6
chr1156194595156194644+intron-Distal4.569686.28479HepG2ILF3
chr1156209633156209736+3'-UTR,intron-Distal5.724267.10959K562PCBP1
chr1156193138156193202+3'-UTR,intron-Distal3.803353.37809K562HNRNPL
chr1156209365156209415+3'-UTR,CDS,intron-Distal4.557755.48383HepG2LARP4
chr1156209632156209747+3'-UTR,intron-Distal3.645067.40862HepG2PCBP2
chr1156209294156209400+3'-UTR,CDS,intron-Distal,intron-Proximal3.546485.19978HepG2BUD13
chr1156209611156209699+3'-UTR,intron-Distal3.280388.88736HepG2LARP4
chr1156209317156209391+3'-UTR,CDS,intron-Distal,intron-Proximal6.3731116.94863K562AQR
chr1156209699156209784+3'-UTR,intron-Distal4.611007.73571HepG2LARP4
chr1156193141156193198+3'-UTR,intron-Distal3.860973.04956HepG2HNRNPL
chr1156190772156190838+intron-Distal,intron-Proximal4.185133.45799HepG2U2AF2
chr1156203582156203647+intron-Distal,intron-Proximal3.685069.40811K562AQR
chr1156206274156206327+intron-Distal,intron-Proximal5.7905811.02807K562AQR
chr1156209642156209721+3'-UTR,intron-Distal3.476324.51064HepG2AKAP1
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for PMF1-BGLAP is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for PMF1-BGLAP is not available on ENCORE database.

  • 50 RBPs can affect the levels of PMF1-BGLAP.  








The Knockdown/knockout RNA-Seq assay for PMF1-BGLAP is not available on ENCORE database.





50 RBPs can affect the gene expression of PMF1-BGLAP :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
PMF1-BGLAPENSG00000260238.114.5048039.21430-1.434802.331501.76540HepG2ACO1
PMF1-BGLAPENSG00000260238.134.785801.843304.238008.064706.47200HepG2ADAR
PMF1-BGLAPENSG00000260238.123.252801.889803.621003.106502.02650HepG2YBX3
PMF1-BGLAPENSG00000260238.122.955601.893403.599704.481503.02370HepG2DDX1
PMF1-BGLAPENSG00000260238.116.532901.790603.206703.153502.10990HepG2DHX30
PMF1-BGLAPENSG00000260238.124.268301.857003.707905.001504.08110HepG2DNAJC21
PMF1-BGLAPENSG00000260238.119.980201.838603.441802.807502.15120HepG2DNAJC2
PMF1-BGLAPENSG00000260238.114.5909041.97540-1.524502.782701.94360HepG2EIF4G1
PMF1-BGLAPENSG00000260238.141.8573075.83950-0.857501.991101.46300HepG2ETF1
PMF1-BGLAPENSG00000260238.134.651901.874804.208005.264904.41280HepG2HNRNPA1
PMF1-BGLAPENSG00000260238.141.390302.084704.311307.947206.81830HepG2HNRNPC
PMF1-BGLAPENSG00000260238.133.231702.071004.004107.434706.47830HepG2HNRNPU
PMF1-BGLAPENSG00000260238.119.919102.115503.235003.868403.01670HepG2ILF2
PMF1-BGLAPENSG00000260238.121.6122050.36050-1.220402.138401.57990HepG2MATR3
PMF1-BGLAPENSG00000260238.120.0617052.94560-1.400102.638401.84840HepG2MSI2
PMF1-BGLAPENSG00000260238.151.6000023.197301.153302.554101.50780HepG2NONO
PMF1-BGLAPENSG00000260238.117.843502.050703.121103.179302.27770HepG2PARN
PMF1-BGLAPENSG00000260238.129.853801.847204.014407.042205.90750HepG2PPIL4
PMF1-BGLAPENSG00000260238.167.1547027.280401.299503.220401.91240HepG2PRPF6
PMF1-BGLAPENSG00000260238.127.4893058.26860-1.083802.239801.73740HepG2PTBP1
PMF1-BGLAPENSG00000260238.1118.6912040.280401.559006.963406.07350HepG2PUF60
PMF1-BGLAPENSG00000260238.117.8865042.72660-1.256302.298801.68550HepG2PUM2
PMF1-BGLAPENSG00000260238.120.4893063.10200-1.622804.227103.47910HepG2QKI
PMF1-BGLAPENSG00000260238.132.4482064.84560-0.998902.172601.68120HepG2NELFE
PMF1-BGLAPENSG00000260238.157.8953024.563901.236803.228102.49880HepG2RPLP0
PMF1-BGLAPENSG00000260238.123.014301.844703.641004.882204.06720HepG2SAFB2
PMF1-BGLAPENSG00000260238.129.1579060.66150-1.056901.908301.40180HepG2SF3B4
PMF1-BGLAPENSG00000260238.170.5431038.613700.869302.054101.43260HepG2SLBP
PMF1-BGLAPENSG00000260238.129.611302.151903.782406.148805.24940HepG2SMN1
PMF1-BGLAPENSG00000260238.138.4716071.60130-0.896202.190801.72840HepG2SRFBP1
PMF1-BGLAPENSG00000260238.1103.1692063.318900.704201.926701.51170HepG2SRSF1
PMF1-BGLAPENSG00000260238.169.1317022.415501.624706.006905.04420HepG2SRSF7
PMF1-BGLAPENSG00000260238.127.0333051.51460-0.930201.889001.41690HepG2SRSF9
PMF1-BGLAPENSG00000260238.115.4978056.91770-1.876805.132904.40810HepG2TAF15
PMF1-BGLAPENSG00000260238.143.653902.014904.4372010.036309.18740HepG2TIAL1
PMF1-BGLAPENSG00000260238.130.906102.030103.928106.931406.10920HepG2TRIM56
PMF1-BGLAPENSG00000260238.180.4450024.814801.696705.687804.66110HepG2XRN2
PMF1-BGLAPENSG00000260238.173.0975038.779200.914402.484001.86140K562DDX47
PMF1-BGLAPENSG00000260238.135.5868010.357401.780602.498601.63250K562FTO
PMF1-BGLAPENSG00000260238.125.686405.223302.297903.345301.73820K562G3BP1
PMF1-BGLAPENSG00000260238.157.5819026.116001.140602.305501.75390K562HNRNPC
PMF1-BGLAPENSG00000260238.144.015105.470203.008206.626304.65520K562HNRNPK
PMF1-BGLAPENSG00000260238.131.135805.425402.520702.808801.77510K562IGF2BP2
PMF1-BGLAPENSG00000260238.137.594805.743902.710303.140702.24370K562MAGOH
PMF1-BGLAPENSG00000260238.136.370205.594802.700505.568903.58710K562PCBP1
PMF1-BGLAPENSG00000260238.122.4029065.49350-1.547703.197502.30310K562PCBP3
PMF1-BGLAPENSG00000260238.135.128705.577402.654902.137201.54100K562PTBP1
PMF1-BGLAPENSG00000260238.1110.6309060.740400.864902.443001.67780K562PUF60
PMF1-BGLAPENSG00000260238.123.119605.371002.105702.763601.92420K562RBM22
PMF1-BGLAPENSG00000260238.123.813205.218202.190002.947801.50480K562RBM34
PMF1-BGLAPENSG00000260238.153.814905.463003.300106.203905.15460K562SRSF1
PMF1-BGLAPENSG00000260238.118.9276050.38810-1.412603.217802.33210K562SYNCRIP
PMF1-BGLAPENSG00000260238.125.418905.539102.198102.931702.20390K562TARDBP
PMF1-BGLAPENSG00000260238.125.970905.340402.281803.269302.36930K562TIA1
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for PMF1-BGLAP is not available on ENCORE database.





9 RBPs can affect the splicing of PMF1-BGLAP :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
MXEPMF1-BGLAPENSG00000260238.1chr1+156202110156202216156203418156203519156182772156182967156206078156206274-0.159000.000420.099492includedHepG2FAM120A
MXEPMF1-BGLAPENSG00000260238.1chr1+1562021101562022161562034181562035191561827721561829671562060781562062740.113000.001350.029911includedHepG2SRSF1
MXEPMF1-BGLAPENSG00000260238.1chr1+1562021101562022161562033961562035191561827721561829671562060781562062740.117000.000960.022991includedHepG2SRSF1
MXEPMF1-BGLAPENSG00000260238.1chr1+1562034181562035191562060781562062741562021101562022161562123431562123820.053000.006370.093001includedHepG2SRSF1
MXEPMF1-BGLAPENSG00000260238.1chr1+1562021101562022161562034181562035191561827721561829671562060781562062740.176000.000030.001911includedHepG2TAF15
MXEPMF1-BGLAPENSG00000260238.1chr1+1562034181562035191562060781562062741562021101562022161562123431562123820.092000.000000.000391includedHepG2TAF15
MXEPMF1-BGLAPENSG00000260238.1chr1+156202110156202216156203418156203519156182772156182967156206078156206274-0.169000.000700.070602includedHepG2CDC40
MXEPMF1-BGLAPENSG00000260238.1chr1+1561953471561954591562021101562022161561827721561829671562034181562035190.052000.002510.067581includedHepG2HNRNPC
MXEPMF1-BGLAPENSG00000260238.1chr1+1561953471561954591562021101562022161561827721561829671562034181562035190.081000.000000.000221includedK562HNRNPC
MXEPMF1-BGLAPENSG00000260238.1chr1+1561953471561954591562034181562035191561827721561829671562060781562062740.055000.000430.010371includedK562HNRNPC
MXEPMF1-BGLAPENSG00000260238.1chr1+1561953471561954591562021101562022161561827721561829671562060781562062740.091000.000470.011101includedK562HNRNPC
MXEPMF1-BGLAPENSG00000260238.1chr1+156203418156203519156206078156206274156202110156202216156212343156212382-0.141000.000000.000112includedK562HNRNPC
MXEPMF1-BGLAPENSG00000260238.1chr1+156203418156203519156206078156206274156202110156202216156212343156212382-0.071000.001220.074712includedHepG2SRSF7
MXEPMF1-BGLAPENSG00000260238.1chr1+156202110156202216156203418156203519156182772156182967156206078156206274-0.145000.000860.096052includedHepG2DDX52
MXEPMF1-BGLAPENSG00000260238.1chr1+156203418156203519156206078156206274156202110156202216156212343156212382-0.069000.002620.060742includedHepG2TIAL1
MXEPMF1-BGLAPENSG00000260238.1chr1+156203418156203519156206078156206274156202110156202216156212343156212382-0.082000.000010.015112includedK562CPEB4

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for PMF1-BGLAP is not avaliable on ENCORE database.