PHTF1

General Information

Gene Name       : PHTF1
Gene ID             : ENSG00000116793.15
Essential Gene : No

Functions

Localization

Domains (AlphaFold: PHTF1)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878PHTF1ENSG00000116793.1516.3813.3614.87ENCSR000AEF
HepG2PHTF1ENSG00000116793.157.2412.229.73ENCSR985KAT
K562PHTF1ENSG00000116793.1514.9215.1315.03ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for PHTF1 is not avaliable on ENCORE database.



Proteins bound to RNA
  • PHTF1 RNA is bound by 6 proteins.  







eCLIP assay for PHTF1 is not avaliable on ENCORE database.





6 proteins are bound to PHTF1 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr1114301933114301980-5'-UTR,intron-Distal,intron-Proximal4.517486.05264HepG2DDX3X
chr1114301978114302064-5'-UTR,intron-Distal,intron-Proximal4.958095.88953K562DDX3X
chr1114301280114301329-5'-UTR,CDS,intron-Distal,intron-Proximal3.499723.32039HepG2PPIG
chr1114300316114300378-CDS,intron-Distal,intron-Proximal3.351883.66187K562ZNF622
chr1114300326114300378-CDS,intron-Distal,intron-Proximal3.715894.80912HepG2PPIG
chr1114267397114267513-CDS,intron-Distal4.347074.07072K562UCHL5
chr1114259564114259644-intron-Distal4.917688.81516K562KHSRP
chr1114287531114287615-intron-Distal5.174868.72587HepG2PCBP2
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for PHTF1 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for PHTF1 is not available on ENCORE database.

  • 74 RBPs can affect the levels of PHTF1.  








The Knockdown/knockout RNA-Seq assay for PHTF1 is not available on ENCORE database.





74 RBPs can affect the gene expression of PHTF1 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
PHTF1ENSG00000116793.11340.44520248.901100.451702.061101.37910HepG2ASCC1
PHTF1ENSG00000116793.11254.75490416.01270-0.707505.000304.22750HepG2BOP1
PHTF1ENSG00000116793.11637.46300458.182500.476302.469501.55500HepG2CCAR1
PHTF1ENSG00000116793.11499.17730236.466501.077808.667107.35970HepG2CIRBP
PHTF1ENSG00000116793.11218.45400369.00020-0.756307.290206.30530HepG2CKAP4
PHTF1ENSG00000116793.11377.34210497.34070-0.398403.183402.39740HepG2DAZAP1
PHTF1ENSG00000116793.11250.76180341.32530-0.444803.063302.18870HepG2DDX19B
PHTF1ENSG00000116793.11427.50180288.180600.568902.464601.87120HepG2DDX3X
PHTF1ENSG00000116793.11197.52110268.45310-0.442702.478601.85540HepG2DNAJC2
PHTF1ENSG00000116793.11442.06160256.018900.787904.467803.60470HepG2EIF4B
PHTF1ENSG00000116793.11472.03160332.524200.505302.529001.78920HepG2FIP1L1
PHTF1ENSG00000116793.11406.71960265.253300.616603.693902.90310HepG2FXR1
PHTF1ENSG00000116793.11518.37870246.140901.0744010.346009.10100HepG2G3BP1
PHTF1ENSG00000116793.11184.95240273.41190-0.563902.524901.90500HepG2HNRNPA1
PHTF1ENSG00000116793.11237.90340403.27220-0.761404.326003.45070HepG2HNRNPF
PHTF1ENSG00000116793.11413.36650249.054200.730905.008004.08900HepG2HNRNPK
PHTF1ENSG00000116793.11382.84870229.486500.738305.840304.52020HepG2HNRNPM
PHTF1ENSG00000116793.11199.09340302.11790-0.601704.052003.32930HepG2HNRNPU
PHTF1ENSG00000116793.11260.55380397.11610-0.608002.440901.75910HepG2IGF2BP1
PHTF1ENSG00000116793.11531.53510250.225201.0868010.964309.71540HepG2IGF2BP2
PHTF1ENSG00000116793.11434.02070234.711500.886802.742501.76450HepG2IGF2BP3
PHTF1ENSG00000116793.11388.68390251.630800.627203.149702.07010HepG2KHSRP
PHTF1ENSG00000116793.11441.59170265.345200.734704.776203.92120HepG2MAGOH
PHTF1ENSG00000116793.11475.76220266.854900.834105.893104.99810HepG2MATR3
PHTF1ENSG00000116793.11413.16110269.217100.617804.473703.46220HepG2MSI2
PHTF1ENSG00000116793.11464.80210273.345100.765808.200207.36160HepG2PTBP1
PHTF1ENSG00000116793.11507.79300321.639700.658702.930002.20630HepG2RAVER1
PHTF1ENSG00000116793.11662.06090461.469600.520604.853404.21570HepG2RBM22
PHTF1ENSG00000116793.11422.33970268.678900.652404.773603.90960HepG2RBM25
PHTF1ENSG00000116793.11444.66950304.209900.547604.028303.39800HepG2NELFE
PHTF1ENSG00000116793.11213.79320434.30070-1.022507.555306.50940HepG2RPLP0
PHTF1ENSG00000116793.11307.04220408.97750-0.413601.995801.39110HepG2SF3B1
PHTF1ENSG00000116793.11387.79070284.594000.446302.713102.12680HepG2SF3B4
PHTF1ENSG00000116793.11326.63260451.38650-0.466703.707802.91560HepG2SLBP
PHTF1ENSG00000116793.11190.50590312.85440-0.715703.718701.83840HepG2SND1
PHTF1ENSG00000116793.11708.15620521.224300.442104.621504.02260HepG2SRFBP1
PHTF1ENSG00000116793.11577.03760297.051900.9579012.7021011.84900HepG2SRSF1
PHTF1ENSG00000116793.11647.54860440.034700.557303.219002.13040HepG2SRSF3
PHTF1ENSG00000116793.11216.77920396.17340-0.869905.346904.43240HepG2SRSF7
PHTF1ENSG00000116793.11370.22750241.665300.615305.080504.37380HepG2SRSF9
PHTF1ENSG00000116793.11317.97440220.947200.525102.419301.40010HepG2STIP1
PHTF1ENSG00000116793.11773.40900528.618200.548907.160106.23980HepG2SUCLG1
PHTF1ENSG00000116793.11685.64310330.711101.0518010.064508.90880HepG2SUPV3L1
PHTF1ENSG00000116793.11443.81310266.994600.733006.717505.91060HepG2TAF15
PHTF1ENSG00000116793.11261.29620402.68140-0.624003.874903.03290HepG2TARDBP
PHTF1ENSG00000116793.11487.09590284.506300.775606.138705.22000HepG2U2AF1
PHTF1ENSG00000116793.11317.12600486.81040-0.618303.392202.46440HepG2UBE2L3
PHTF1ENSG00000116793.11321.27200230.110600.481402.968102.27670HepG2ZC3H8
PHTF1ENSG00000116793.11604.73390759.48670-0.328702.515401.96960K562AGGF1
PHTF1ENSG00000116793.11254.02170475.97700-0.9059011.321908.40670K562AKAP1
PHTF1ENSG00000116793.11713.39120499.278800.514702.079801.32920K562BOP1
PHTF1ENSG00000116793.111171.58530907.600400.368203.656402.27460K562CCDC124
PHTF1ENSG00000116793.11960.92370691.495800.474604.073002.50500K562CIRBP
PHTF1ENSG00000116793.111141.60650786.301500.537802.737301.68490K562CNOT7
PHTF1ENSG00000116793.11755.70480530.925600.509202.541101.78860K562CPSF6
PHTF1ENSG00000116793.11681.37590482.284500.498504.294102.95510K562DDX3X
PHTF1ENSG00000116793.11663.95200856.34300-0.367103.736702.99500K562DDX47
PHTF1ENSG00000116793.11371.16320488.97200-0.397702.759301.45700K562DDX6
PHTF1ENSG00000116793.11552.85970415.053500.413502.454701.59600K562EFTUD2
PHTF1ENSG00000116793.11415.56200529.74500-0.350202.558501.40680K562EIF2S1
PHTF1ENSG00000116793.11954.76600606.942800.653509.686708.46580K562EIF2S2
PHTF1ENSG00000116793.11158.87950264.72990-0.736602.587601.61800K562EIF3A
PHTF1ENSG00000116793.11378.96210602.29240-0.668407.371906.08490K562EIF3G
PHTF1ENSG00000116793.11850.372201088.19010-0.355803.223702.21220K562EIF4G2
PHTF1ENSG00000116793.11385.25710578.85440-0.587405.272303.80260K562HNRNPA1
PHTF1ENSG00000116793.11766.75390432.862800.824809.948508.87340K562HNRNPC
PHTF1ENSG00000116793.11531.56740773.89660-0.541905.083803.60080K562HNRNPL
PHTF1ENSG00000116793.11409.24330641.04240-0.647507.041705.61450K562HNRNPU
PHTF1ENSG00000116793.11591.47990706.51000-0.256402.062801.40720K562NSUN2
PHTF1ENSG00000116793.11837.165701118.13830-0.417503.798402.12600K562PNPT1
PHTF1ENSG00000116793.11590.30850472.891800.319902.037101.34980K562POLR2G
PHTF1ENSG00000116793.11843.44000658.771900.356402.845302.17250K562PTBP1
PHTF1ENSG00000116793.111458.941301187.321400.297102.641301.84510K562PUF60
PHTF1ENSG00000116793.11281.62520411.44240-0.546902.546001.76320K562RPS19
PHTF1ENSG00000116793.11680.57520481.977500.497702.641601.69100K562SF3B1
PHTF1ENSG00000116793.11711.98230391.112300.864208.290206.48930K562SUPV3L1
PHTF1ENSG00000116793.11259.53060373.28530-0.524402.606701.70030K562TIAL1
PHTF1ENSG00000116793.11297.39330396.44570-0.414802.130901.31640K562TRIM56
PHTF1ENSG00000116793.11819.95430665.515300.301002.594801.37000K562TROVE2
PHTF1ENSG00000116793.11881.88700515.606000.774205.462703.82240K562U2AF1
PHTF1ENSG00000116793.11756.00270532.375700.505804.991903.91480K562U2AF2
PHTF1ENSG00000116793.11900.63540749.128400.265602.292601.63470K562UPF1
PHTF1ENSG00000116793.11546.44900666.58020-0.286702.266501.49380K562WDR43
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for PHTF1 is not available on ENCORE database.





6 RBPs can affect the splicing of PHTF1 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SEPHTF1ENSG00000116793.11chr1-114292127114292211114281351114281421114300320114300377-0.274000.001920.02444excludedHepG2U2AF2
SEPHTF1ENSG00000116793.11chr1-1142428141142429261142423251142424211142434151142435710.595000.008940.07426includedK562AQR
SEPHTF1ENSG00000116793.11chr1-114255900114256060114254561114254735114267380114267581-0.074000.002660.02775excludedK562AQR
SEPHTF1ENSG00000116793.11chr1-114289479114289636114281351114281421114300320114300377-0.072000.000060.01787excludedK562DROSHA
SEPHTF1ENSG00000116793.11chr1-114292127114292211114281351114281421114300320114300377-0.165000.000000.00000excludedK562PUS1
SEPHTF1ENSG00000116793.11chr1-114292127114292211114281351114281421114300320114300377-0.093000.004710.06906excludedK562U2AF2
SEPHTF1ENSG00000116793.11chr1-114292127114292211114281351114281421114300320114300377-0.119000.001350.03434excludedK562RBM15
SEPHTF1ENSG00000116793.11chr1-1142683671142685831142673801142675151142690391142690800.240000.000000.00000includedK562HNRNPC
A3SSPHTF1ENSG00000116793.11chr1-1143012801143014701143012801143013551143016441143020980.260000.012690.06484longerK562AQR
A3SSPHTF1ENSG00000116793.11chr1-1142545611142547561142545611142547351142559001142578340.201000.000000.00000longerK562AQR
A3SSPHTF1ENSG00000116793.11chr1-1143003201143003941143003201143003771143012801143015030.081000.005760.03273longerK562AQR
A3SSPHTF1ENSG00000116793.11chr1-1142673801142675811142673801142675151142690391142691960.078000.000250.00200longerK562AQR
MXEPHTF1ENSG00000116793.11chr1-1142894791142896361142921271142922111142813511142814211143003201143003770.117000.000890.016761includedK562DROSHA
MXEPHTF1ENSG00000116793.11chr1-1142543671142544571142545611142547351142528751142530971142673801142675150.068000.007550.050431includedK562AQR
MXEPHTF1ENSG00000116793.11chr1-1142559001142560601142673801142675601142545611142547351142690391142691960.080000.000870.008091includedK562AQR
MXEPHTF1ENSG00000116793.11chr1-1142559001142560601142673801142675661142545611142547351142690391142691960.085000.000880.008191includedK562AQR
MXEPHTF1ENSG00000116793.11chr1-1142559001142560601142673801142675811142545611142547351142690391142691960.099000.000360.003761includedK562AQR
MXEPHTF1ENSG00000116793.11chr1-1142559001142560601142673801142675371142545611142547351142690391142691960.119000.000060.000771includedK562AQR

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for PHTF1 is not avaliable on ENCORE database.