MSANTD3

General Information

Gene Name       : MSANTD3
Gene ID             : ENSG00000066697.14
Essential Gene : No

Functions

Localization

Domains (AlphaFold: MSANTD3)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878MSANTD3ENSG00000066697.1411.3813.7512.57ENCSR000AEF
HepG2MSANTD3ENSG00000066697.1410.9018.8414.87ENCSR985KAT
K562MSANTD3ENSG00000066697.1414.9017.8816.39ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for MSANTD3 is not avaliable on ENCORE database.



Proteins bound to RNA
  • MSANTD3 RNA is bound by 4 proteins.  







eCLIP assay for MSANTD3 is not avaliable on ENCORE database.





4 proteins are bound to MSANTD3 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr9103212886103212992+3'-UTR,CDS,intron-Distal3.719596.76362K562YBX3
chr9103213189103213254+3'-UTR,CDS,intron-Distal4.181614.95438K562YBX3
chr9103212895103212943+3'-UTR,CDS,intron-Distal4.140616.37184K562RBM15
chr9103213231103213328+3'-UTR,CDS,intron-Distal5.0723017.98612K562PUM2
chr9103204417103204478+CDS3.771133.46958K562YBX3
chr9103204638103204700+intron-Proximal3.842334.52312K562AQR
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for MSANTD3 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for MSANTD3 is not available on ENCORE database.

  • 59 RBPs can affect the levels of MSANTD3.  








The Knockdown/knockout RNA-Seq assay for MSANTD3 is not available on ENCORE database.





59 RBPs can affect the gene expression of MSANTD3 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
MSANTD3ENSG00000066697.10488.41790229.753901.0879016.1031014.89490HepG2ACO1
MSANTD3ENSG00000066697.10531.69530276.903000.941107.190706.37790HepG2AKAP1
MSANTD3ENSG00000066697.10374.69760230.801200.699006.048004.95420HepG2AKAP8L
MSANTD3ENSG00000066697.10143.95630267.48300-0.893804.107603.16910HepG2CNOT7
MSANTD3ENSG00000066697.10586.48650342.002300.778009.576908.51790HepG2CELF1
MSANTD3ENSG00000066697.10309.97400223.771200.470002.283901.66010HepG2DDX21
MSANTD3ENSG00000066697.10379.13100231.618200.710803.524502.66530HepG2DDX55
MSANTD3ENSG00000066697.10442.60540227.808800.958106.217905.32130HepG2DDX6
MSANTD3ENSG00000066697.10399.57720273.099000.549003.861202.48170HepG2EIF2S2
MSANTD3ENSG00000066697.10507.86860235.686101.107508.340107.17840HepG2EIF4B
MSANTD3ENSG00000066697.10341.94970224.476300.607103.280002.37070HepG2EWSR1
MSANTD3ENSG00000066697.10784.86440363.391501.1108012.0681010.62360HepG2FIP1L1
MSANTD3ENSG00000066697.10308.63540422.98570-0.454702.143501.57630HepG2GPKOW
MSANTD3ENSG00000066697.10331.78380457.60570-0.463902.718802.00720HepG2HNRNPF
MSANTD3ENSG00000066697.10199.42820403.66470-1.017306.312205.40510HepG2HNRNPLL
MSANTD3ENSG00000066697.10322.32230450.61710-0.483401.930201.31680HepG2IGF2BP1
MSANTD3ENSG00000066697.10382.91590216.082000.825302.579301.63140HepG2IGF2BP3
MSANTD3ENSG00000066697.10227.63850351.54540-0.627002.928801.64440HepG2KRR1
MSANTD3ENSG00000066697.10446.83850244.434300.870204.687403.50960HepG2PABPC1
MSANTD3ENSG00000066697.10192.00140348.09830-0.858406.553905.68970HepG2PUF60
MSANTD3ENSG00000066697.10534.93470264.494201.016005.984504.97440HepG2RAVER1
MSANTD3ENSG00000066697.10581.09780419.624100.469603.779102.79440HepG2RBM15
MSANTD3ENSG00000066697.101075.14290362.678601.5677042.9203041.34950HepG2RBM22
MSANTD3ENSG00000066697.10629.31750492.861300.352502.304801.67280HepG2RPLP0
MSANTD3ENSG00000066697.10159.58530259.80050-0.703102.994902.01390HepG2RPS10
MSANTD3ENSG00000066697.10304.26920208.586300.544602.796702.17860HepG2RPS19
MSANTD3ENSG00000066697.10297.46790176.705800.751303.562802.68550HepG2RRP9
MSANTD3ENSG00000066697.10160.20120252.80070-0.658102.936701.58650HepG2SART3
MSANTD3ENSG00000066697.10247.23070333.76000-0.433002.640301.95290HepG2SLBP
MSANTD3ENSG00000066697.10423.07450265.482000.672206.760305.82340HepG2SMN1
MSANTD3ENSG00000066697.10421.56980269.644400.644603.559102.45730HepG2SMNDC1
MSANTD3ENSG00000066697.10679.24780409.621700.729509.930509.14110HepG2SRFBP1
MSANTD3ENSG00000066697.10334.86110247.691800.434902.311201.86860HepG2SRSF1
MSANTD3ENSG00000066697.10344.62240449.56120-0.383502.361501.71490HepG2SRSF7
MSANTD3ENSG00000066697.10488.73720201.509301.2781020.8349019.57780HepG2SRSF9
MSANTD3ENSG00000066697.10264.89820355.63040-0.424902.707702.19880HepG2SSB
MSANTD3ENSG00000066697.10484.49810390.875500.309701.884301.35270HepG2SUCLG1
MSANTD3ENSG00000066697.10188.07090354.90080-0.916105.612603.71990HepG2SUGP2
MSANTD3ENSG00000066697.10174.05180248.37490-0.513002.378101.90810HepG2TIAL1
MSANTD3ENSG00000066697.10544.60650310.945000.808505.720804.83450HepG2U2AF1
MSANTD3ENSG00000066697.10228.55450322.80960-0.498103.189002.44930HepG2UPF1
MSANTD3ENSG00000066697.10394.30070311.661400.339201.854401.34280HepG2UTP3
MSANTD3ENSG00000066697.10613.19310355.030100.7883012.0099011.07010HepG2ZNF622
MSANTD3ENSG00000066697.10629.84330461.127100.449704.241503.56520K562AGGF1
MSANTD3ENSG00000066697.10635.71510479.830600.405802.855402.19190K562AKAP8L
MSANTD3ENSG00000066697.10559.58970420.700300.411502.289201.50280K562BOP1
MSANTD3ENSG00000066697.10838.55900575.023400.544202.633901.60340K562CNOT7
MSANTD3ENSG00000066697.10689.82560447.323000.624806.044004.88910K562CPSF6
MSANTD3ENSG00000066697.101214.20980829.132200.550206.886505.36870K562CELF1
MSANTD3ENSG00000066697.10724.42770604.737300.260401.905601.34610K562DDX47
MSANTD3ENSG00000066697.10592.47180455.144800.380302.218001.45050K562FMR1
MSANTD3ENSG00000066697.10363.25100282.113800.364601.983901.45500K562FXR1
MSANTD3ENSG00000066697.10471.28540342.090500.462103.094501.95750K562HNRNPA1
MSANTD3ENSG00000066697.10563.77100368.743700.612402.650901.74190K562HNRNPM
MSANTD3ENSG00000066697.10640.78700509.195700.331502.104101.39500K562KIF1C
MSANTD3ENSG00000066697.10565.48180364.679000.632803.680602.58550K562KRR1
MSANTD3ENSG00000066697.10569.53620416.880000.450103.063902.14040K562METAP2
MSANTD3ENSG00000066697.10616.52530494.290500.318702.411001.70970K562NSUN2
MSANTD3ENSG00000066697.10374.01830269.649400.471902.334801.64370K562PRPF8
MSANTD3ENSG00000066697.10255.42370348.97950-0.450302.299801.48140K562PSIP1
MSANTD3ENSG00000066697.10743.73050475.810300.644305.905605.14930K562PUS1
MSANTD3ENSG00000066697.10582.82000463.646900.329902.292001.74300K562RBM15
MSANTD3ENSG00000066697.10557.60670406.176200.457002.442101.53330K562SF3B1
MSANTD3ENSG00000066697.10730.88360583.354900.325202.123801.37780K562ZC3H8
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for MSANTD3 is not available on ENCORE database.





5 RBPs can affect the splicing of MSANTD3 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SEMSANTD3ENSG00000066697.10chr9+1032064091032075191032044301032046381032128381032135110.083000.005810.08507includedK562SRSF1
SEMSANTD3ENSG00000066697.10chr9+103207450103207508103204187103204638103212838103212963-0.058000.003380.03870excludedHepG2U2AF2
SEMSANTD3ENSG00000066697.10chr9+1032074501032075191032041871032046381032128381032129870.096000.001550.06222includedHepG2SFPQ
SEMSANTD3ENSG00000066697.10chr9+1032064091032075191032044301032046381032128381032135110.155000.000710.03341includedHepG2MATR3
SEMSANTD3ENSG00000066697.10chr9+1032064091032075191032044301032046381032128381032135110.072000.000230.04385includedK562EIF4G2

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for MSANTD3 is not avaliable on ENCORE database.