LIMS2

General Information

Gene Name       : LIMS2
Gene ID             : ENSG00000072163.19
Essential Gene : No

Functions

Localization

Domains (AlphaFold: LIMS2)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878LIMS2ENSG00000072163.190.000.130.07ENCSR000AEF
HepG2LIMS2ENSG00000072163.195.280.893.08ENCSR985KAT
K562LIMS2ENSG00000072163.190.000.000.00ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for LIMS2 is not avaliable on ENCORE database.



Proteins bound to RNA
  • LIMS2 RNA is bound by 1 proteins.  







eCLIP assay for LIMS2 is not avaliable on ENCORE database.





1 proteins are bound to LIMS2 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr2128396647128396792-3'-UTR,intron-Distal,intron-Proximal4.630606.53456HepG2PCBP2
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for LIMS2 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for LIMS2 is not available on ENCORE database.

  • 56 RBPs can affect the levels of LIMS2.  








The Knockdown/knockout RNA-Seq assay for LIMS2 is not available on ENCORE database.





56 RBPs can affect the gene expression of LIMS2 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
LIMS2ENSG00000072163.14181.00090102.002700.827302.653201.72980HepG2ABCF1
LIMS2ENSG00000072163.1444.84020106.68900-1.250505.091904.20640HepG2AUH
LIMS2ENSG00000072163.1415.0556071.83130-2.254307.193206.28150HepG2BOP1
LIMS2ENSG00000072163.1415.1155060.41870-1.999004.634703.66730HepG2CALR
LIMS2ENSG00000072163.1416.85780110.66250-2.714702.612401.85940HepG2CIRBP
LIMS2ENSG00000072163.1438.9266083.92090-1.108303.317002.10500HepG2CPSF7
LIMS2ENSG00000072163.14119.3069055.375601.107305.520104.39380HepG2DDX19B
LIMS2ENSG00000072163.1434.01130134.81090-1.986901.889901.36280HepG2DDX3X
LIMS2ENSG00000072163.1499.9157042.393601.236802.882702.09490HepG2DDX55
LIMS2ENSG00000072163.1425.2673074.88600-1.567403.883702.73550HepG2DDX59
LIMS2ENSG00000072163.1480.3204031.385401.355603.540502.75150HepG2DNAJC21
LIMS2ENSG00000072163.1458.1114031.110500.901302.080601.49980HepG2DNAJC2
LIMS2ENSG00000072163.1425.6045057.44940-1.165902.578801.70290HepG2EIF3D
LIMS2ENSG00000072163.1425.38930122.95440-2.275802.224001.64920HepG2EIF4A3
LIMS2ENSG00000072163.1418.9730050.60810-1.415403.168402.28450HepG2EIF4G1
LIMS2ENSG00000072163.1452.35080122.49210-1.226405.438004.64340HepG2ETF1
LIMS2ENSG00000072163.14226.02870102.981601.134004.875303.87770HepG2FIP1L1
LIMS2ENSG00000072163.1443.03720117.62210-1.450506.403705.23740HepG2FUBP3
LIMS2ENSG00000072163.14142.3962027.056702.3958013.1012010.90780HepG2GNB2L1
LIMS2ENSG00000072163.14241.8683074.756701.6938012.2583010.99980HepG2GPKOW
LIMS2ENSG00000072163.1483.9636048.300400.797602.039901.41720HepG2HNRNPF
LIMS2ENSG00000072163.1424.4307071.34150-1.546004.054003.30690HepG2HNRNPLL
LIMS2ENSG00000072163.14176.5347071.006601.313807.208105.78300HepG2HNRNPM
LIMS2ENSG00000072163.14129.8653035.012601.8910011.6539010.48070HepG2HNRNPU
LIMS2ENSG00000072163.1486.5903047.560900.864302.240901.58530HepG2IGF2BP1
LIMS2ENSG00000072163.14194.39700108.789400.837403.422302.49750HepG2LARP4
LIMS2ENSG00000072163.1489.7795027.534201.705104.986403.08230HepG2NOLC1
LIMS2ENSG00000072163.1460.98250100.12720-0.715402.248101.69070HepG2PCBP1
LIMS2ENSG00000072163.1479.4512031.228301.347102.840302.09490HepG2PPIL4
LIMS2ENSG00000072163.14164.6966048.567701.7616010.878109.80080HepG2PUF60
LIMS2ENSG00000072163.14157.3495051.516401.610802.122701.53160HepG2PUM2
LIMS2ENSG00000072163.1460.49560110.35330-0.867202.915002.27670HepG2QKI
LIMS2ENSG00000072163.1438.54730104.54840-1.439506.312505.08430HepG2RBM15
LIMS2ENSG00000072163.1457.28480102.38100-0.837702.638002.12930HepG2RBM22
LIMS2ENSG00000072163.1473.5986031.991501.201902.638001.66880HepG2RBM27
LIMS2ENSG00000072163.14112.6527055.914501.010503.488702.80700HepG2RPS19
LIMS2ENSG00000072163.1486.0095028.737701.581505.149904.05810HepG2RPS3A
LIMS2ENSG00000072163.145.5720032.30700-2.535604.100303.16440HepG2RRP9
LIMS2ENSG00000072163.1468.9785031.179801.145403.206902.52370HepG2SAFB2
LIMS2ENSG00000072163.14143.5105039.032001.878305.083703.12650HepG2SF1
LIMS2ENSG00000072163.1430.2302075.22700-1.315302.327401.70900HepG2SF3A3
LIMS2ENSG00000072163.1428.5103070.61520-1.308503.195802.43990HepG2SF3B1
LIMS2ENSG00000072163.14110.0961046.553801.241705.086904.18140HepG2SLBP
LIMS2ENSG00000072163.1489.2884031.603501.498303.325001.56970HepG2SND1
LIMS2ENSG00000072163.1443.47030115.63600-1.411505.945305.28780HepG2SRFBP1
LIMS2ENSG00000072163.1456.44060110.71840-0.972103.012102.52380HepG2SRSF1
LIMS2ENSG00000072163.1414.9442075.97880-2.346006.831405.20600HepG2SRSF3
LIMS2ENSG00000072163.14109.2093054.534001.001803.565902.87670HepG2SUCLG1
LIMS2ENSG00000072163.1431.6717069.53050-1.134502.676901.96260HepG2TARDBP
LIMS2ENSG00000072163.1492.2765034.325501.426605.919005.14960HepG2TRIM56
LIMS2ENSG00000072163.14165.8228047.436601.805504.011102.93480HepG2TUFM
LIMS2ENSG00000072163.1448.7537088.05220-0.852802.337101.75520HepG2U2AF1
LIMS2ENSG00000072163.146.1951024.91540-2.007802.891402.11700HepG2UCHL5
LIMS2ENSG00000072163.1414.3480064.41000-2.166404.090303.38360HepG2UTP3
LIMS2ENSG00000072163.14110.3712041.532401.410003.446302.64170HepG2XRN2
LIMS2ENSG00000072163.1415.9898073.37320-2.198104.418903.76970HepG2ZNF622
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for LIMS2 is not available on ENCORE database.






No RBPs affect the alternative splcing events of LIMS2 on ENCORE database.





The Knockdown/knockout RNA-Seq assay for LIMS2 is not avaliable on ENCORE database.