GTF3C2

General Information

Gene Name       : GTF3C2
Gene ID             : ENSG00000115207.13
Essential Gene : Yes

Functions

Localization

Domains (AlphaFold: GTF3C2)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878GTF3C2ENSG00000115207.1351.0458.3954.72ENCSR000AEF
HepG2GTF3C2ENSG00000115207.1367.0768.1367.60ENCSR985KAT
K562GTF3C2ENSG00000115207.1360.9665.1163.03ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for GTF3C2 is not avaliable on ENCORE database.



Proteins bound to RNA
  • GTF3C2 RNA is bound by 29 proteins.  







eCLIP assay for GTF3C2 is not avaliable on ENCORE database.





29 proteins are bound to GTF3C2 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr22754931427549375-3'-UTR,intron-Distal,intron-Proximal3.571294.22482HepG2IGF2BP1
chr22754931127549384-3'-UTR,intron-Distal,intron-Proximal4.840627.55425HepG2IGF2BP3
chr22754938027549431-3'-UTR,intron-Distal3.334023.15019HepG2IGF2BP1
chr22756635627566436-3'-UTR,5'-UTR,CDS,intron-Distal3.7067815.77423HepG2DDX3X
chr22755004627550093-3'-UTR,CDS,intron-Distal,intron-Proximal3.712099.30518HepG2PPIG
chr22755009727550146-3'-UTR,CDS,intron-Distal4.096426.39364HepG2PPIG
chr22754924627549326-3'-UTR,intron-Distal,intron-Proximal5.295019.39648K562PABPC4
chr22757958727579614-5'-UTR,intron-Distal4.154207.26476HepG2AQR
chr22757929027579325-5'-UTR,intron-Distal3.838053.69388HepG2XPO5
chr22757911927579154-5'-UTR,intron-Distal,intron-Proximal3.796673.77680K562TIA1
chr22757958427579636-5'-UTR,intron-Distal,intron-Proximal4.1474121.78638HepG2PRPF8
chr22755677227556844-CDS,intron-Distal,intron-Proximal5.9807513.28065K562AQR
chr22756569627565723-CDS,intron-Distal3.985235.24452HepG2PPIG
chr22755851327558552-CDS,intron-Distal3.977996.41974HepG2PPIG
chr22755226327552314-CDS,intron-Distal3.014424.71502HepG2GRWD1
chr22755918727559233-CDS,intron-Distal,intron-Proximal3.543026.41974HepG2PPIG
chr22756034627560394-CDS,intron-Distal,intron-Proximal3.720069.97127HepG2PPIG
chr22756481927564870-CDS,intron-Distal3.466168.54450HepG2PPIG
chr22756637527566400-CDS,intron-Distal4.8024020.75651K562RBM15
chr22756034727560358-CDS,intron-Distal,intron-Proximal4.175934.69889HepG2GRWD1
chr22755879227558836-CDS,intron-Distal,intron-Proximal4.499728.09084HepG2PPIG
chr22755225527552291-CDS,intron-Distal4.877165.86613HepG2PPIG
chr22755104027551106-CDS,intron-Distal,intron-Proximal4.5728019.63067K562SF3B4
chr22755925027559321-CDS,intron-Distal,intron-Proximal3.9529013.21932HepG2U2AF2
chr22755132927551388-CDS,intron-Distal,intron-Proximal3.342095.80517HepG2GRWD1
chr22755213127552142-CDS,intron-Distal3.223453.32039HepG2PPIG
chr22755679927556875-CDS,intron-Distal,intron-Proximal6.1694017.69067HepG2PRPF8
chr22755171627551752-CDS,intron-Distal,intron-Proximal4.198833.60441HepG2GRWD1
chr22756481427564945-CDS,intron-Distal,intron-Proximal3.181904.45146K562GRWD1
chr22754970527549807-CDS,intron-Distal3.027726.73159HepG2U2AF2
chr22756593827566009-CDS,intron-Distal3.8158512.35970HepG2PPIG
chr22756012027560153-CDS,intron-Distal3.031783.22545HepG2PPIG
chr22756483127564957-CDS,intron-Distal3.387686.95218K562UCHL5
chr22756634827566375-CDS,intron-Distal4.1677216.69512K562RBM15
chr22755661927556708-CDS,intron-Distal,intron-Proximal5.1803915.60758K562SF3B4
chr22755846427558503-CDS,intron-Distal,intron-Proximal4.946774.17466K562DDX24
chr22756495427565074-CDS,intron-Distal3.4797211.74139HepG2PPIG
chr22755840327558467-CDS,intron-Distal,intron-Proximal4.150675.47926K562AQR
chr22754999327550045-CDS,intron-Distal,intron-Proximal4.603314.65563K562AQR
chr22755679027556888-CDS,intron-Distal,intron-Proximal4.4848012.97959HepG2EFTUD2
chr22755199127552054-CDS,intron-Distal4.040608.02029HepG2GRWD1
chr22755884227558955-CDS,intron-Distal,intron-Proximal4.6756118.67225HepG2EFTUD2
chr22756570327565757-CDS,intron-Distal3.997873.86417HepG2PRPF4
chr22755682627556876-CDS,intron-Distal,intron-Proximal3.820569.87651HepG2BUD13
chr22755887327558939-CDS,intron-Distal,intron-Proximal4.117424.93376K562PRPF8
chr22755920627559250-CDS,intron-Distal4.3024412.08856HepG2U2AF2
chr22756488127564928-CDS,intron-Distal4.8644217.86190HepG2BCLAF1
chr22756012127560160-CDS,intron-Distal3.068984.24005HepG2BCLAF1
chr22756571027565766-CDS,intron-Distal,intron-Proximal4.057854.51688K562YBX3
chr22755887827558927-CDS,intron-Distal,intron-Proximal3.715044.10684HepG2AQR
chr22756508227565130-CDS,intron-Distal,intron-Proximal4.292565.97994K562AQR
chr22755818027558255-CDS,intron-Distal4.643816.10195HepG2PTBP1
chr22755139227551459-CDS,intron-Distal,intron-Proximal4.481965.79396K562DDX24
chr22755661427556692-CDS,intron-Distal,intron-Proximal4.203688.20004K562BUD13
chr22755210427552141-CDS,intron-Distal3.175933.79741HepG2GRWD1
chr22756481827564858-CDS,intron-Distal3.417205.96568HepG2GRWD1
chr22755676827556874-CDS,intron-Distal,intron-Proximal4.6765811.19401K562EFTUD2
chr22756637627566387-CDS,intron-Distal5.5137510.41121HepG2RBM15
chr22755846627558500-CDS,intron-Distal,intron-Proximal4.232864.04622HepG2GRWD1
chr22756036327560426-CDS,intron-Distal,intron-Proximal3.242347.86167K562YBX3
chr22755855227558574-CDS,intron-Distal,intron-Proximal3.466163.22545HepG2PPIG
chr22756079427560822-CDS,intron-Distal4.305356.22576HepG2BCLAF1
chr22755681127556924-CDS,intron-Distal,intron-Proximal4.901034.97857HepG2AQR
chr22755888227558976-CDS,intron-Distal,intron-Proximal3.307558.78955HepG2PRPF8
chr22755819427558268-CDS,intron-Distal4.478053.91475K562PTBP1
chr22756638727566396-CDS,intron-Distal5.6229611.34457HepG2RBM15
chr22756081827560885-CDS,intron-Distal5.2858111.87626K562YBX3
chr22755853527558574-CDS,intron-Distal,intron-Proximal3.199873.39477K562BUD13
chr22755685427556867-CDS,intron-Distal,intron-Proximal4.758644.67689HepG2PPIG
chr22756501827565101-CDS,intron-Distal,intron-Proximal3.676307.14119HepG2AQR
chr22756619327566274-CDS,intron-Distal,intron-Proximal3.297367.78944HepG2GRWD1
chr22755846327558513-CDS,intron-Distal,intron-Proximal4.389739.56105HepG2PPIG
chr22756635127566376-CDS,intron-Distal5.5542110.41121HepG2RBM15
chr22755840327558506-CDS,intron-Distal,intron-Proximal4.0939810.79642HepG2PRPF8
chr22756485727564881-CDS,intron-Distal3.208416.50801HepG2BCLAF1
chr22755167827551735-CDS,intron-Distal,intron-Proximal4.0873810.64040HepG2PRPF8
chr22756079127560818-CDS,intron-Distal,intron-Proximal5.5069112.98654K562YBX3
chr22755888727558988-CDS,intron-Distal,intron-Proximal3.255163.92899HepG2PRPF4
chr22756540727565569-intron-Distal3.588358.44734K562KHSRP
chr22755900327559065-intron-Distal,intron-Proximal4.6444410.59949HepG2PRPF8
chr22756561527565680-intron-Distal,intron-Proximal4.607705.35117HepG2PRPF8
chr22756559827565672-intron-Distal,intron-Proximal3.725574.40430HepG2AQR
chr22756974427569787-intron-Distal3.890583.57189K562ILF3
chr22756959627569692-intron-Distal3.885937.65597HepG2ILF3
chr22756559127565662-intron-Distal,intron-Proximal4.134064.36329HepG2PRPF4
chr22757432427574376-intron-Distal3.212734.17496HepG2HNRNPM
chr22757955127579584-intron-Distal3.4063612.21824HepG2PRPF8
chr22755895027559019-intron-Distal,intron-Proximal5.353017.90091HepG2AQR
chr22755895527559053-intron-Distal,intron-Proximal5.2494717.38602HepG2EFTUD2
chr22757845227578503-intron-Distal4.974654.15474K562XRCC6
chr22756068327560770-intron-Distal,intron-Proximal3.457807.28272HepG2PRPF4
chr22757158627571664-intron-Distal3.553004.98314K562ILF3
chr22755873727558781-intron-Distal,intron-Proximal4.667364.13847K562AQR
chr22757955327579587-intron-Distal5.205257.45424HepG2AQR
chr22757287227573009-intron-Distal3.766656.07399HepG2SFPQ
chr22755874427558773-intron-Distal,intron-Proximal5.318086.69228HepG2PRPF8
chr22757959927579605-intron-Distal5.1848313.40185K562AQR
chr22757954027579599-intron-Distal5.4106616.94745K562AQR
chr22757156227571607-intron-Distal3.374967.94504HepG2ILF3
chr22757300227573124-intron-Distal,intron-Proximal3.038893.38183K562NONO
chr22757862927578711-intron-Distal3.241463.91140HepG2CSTF2
chr22756564027565693-intron-Distal,intron-Proximal4.585045.47926K562AQR
chr22757160727571663-intron-Distal3.9039913.69339HepG2ILF3
chr22757286127572981-intron-Distal3.022336.38944K562KHSRP
chr22756553627565586-intron-Distal4.099697.43035HepG2EFTUD2
chr22755837827558432-intron-Distal,intron-Proximal6.5348715.75774HepG2EFTUD2
chr22757464727574740-intron-Distal3.182573.46849HepG2TAF15
chr22755901927559061-intron-Distal,intron-Proximal4.608544.59919HepG2AQR
chr22755877327558784-intron-Distal,intron-Proximal3.119064.46036HepG2PRPF8
chr22755665527556694-intron-Distal,intron-Proximal3.671964.35521HepG2BUD13
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for GTF3C2 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for GTF3C2 is not available on ENCORE database.

  • 46 RBPs can affect the levels of GTF3C2.  








The Knockdown/knockout RNA-Seq assay for GTF3C2 is not available on ENCORE database.





46 RBPs can affect the gene expression of GTF3C2 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
GTF3C2ENSG00000115207.91460.821902025.29510-0.471404.602903.35810HepG2ADAR
GTF3C2ENSG00000115207.92835.905903485.57540-0.297604.824603.95910HepG2AUH
GTF3C2ENSG00000115207.91431.524701984.30800-0.471103.792002.75370HepG2BCLAF1
GTF3C2ENSG00000115207.92058.301401633.532600.333402.834102.22900HepG2BOP1
GTF3C2ENSG00000115207.92601.494702176.398700.257304.230603.44140HepG2CKAP4
GTF3C2ENSG00000115207.91215.568001499.65810-0.303002.116301.50590HepG2CPSF6
GTF3C2ENSG00000115207.92076.687103065.85900-0.5620012.8045011.61870HepG2CELF1
GTF3C2ENSG00000115207.91792.090002129.38670-0.248801.876801.30630HepG2DDX21
GTF3C2ENSG00000115207.91585.536502100.85580-0.406002.839101.53650HepG2DDX27
GTF3C2ENSG00000115207.91842.383403108.30640-0.7546010.090708.96130HepG2DDX3X
GTF3C2ENSG00000115207.91654.771102245.33110-0.440303.340202.50030HepG2DDX55
GTF3C2ENSG00000115207.92045.233002670.05630-0.384602.660902.05490HepG2DDX6
GTF3C2ENSG00000115207.91503.610402566.83280-0.7716010.307509.20790HepG2EIF2S1
GTF3C2ENSG00000115207.92136.374601699.941200.329602.176101.60460HepG2GPKOW
GTF3C2ENSG00000115207.92504.953103029.59120-0.274303.762202.69840HepG2HNRNPA2B1
GTF3C2ENSG00000115207.92666.232603002.81200-0.171502.268701.65020HepG2HNRNPL
GTF3C2ENSG00000115207.92166.181801622.288600.417001.894901.36470HepG2HNRNPLL
GTF3C2ENSG00000115207.92315.117502863.02000-0.306502.104201.52890HepG2MAGOH
GTF3C2ENSG00000115207.93535.731302879.054200.296301.895601.36800HepG2MATR3
GTF3C2ENSG00000115207.91743.375002089.03190-0.261002.392201.63690HepG2MSI2
GTF3C2ENSG00000115207.92217.363502946.88030-0.410303.316302.62530HepG2NCBP2
GTF3C2ENSG00000115207.93151.626602781.397100.180201.958901.43410HepG2PCBP1
GTF3C2ENSG00000115207.92647.474902217.440900.255603.849703.14710HepG2PUS1
GTF3C2ENSG00000115207.92558.981703065.22300-0.260402.966502.32380HepG2QKI
GTF3C2ENSG00000115207.92343.014802781.83080-0.247702.210001.60190HepG2RBM25
GTF3C2ENSG00000115207.91246.150801605.72330-0.365702.955202.22550HepG2SF3B1
GTF3C2ENSG00000115207.92225.056402946.63040-0.405208.114907.18430HepG2SF3B4
GTF3C2ENSG00000115207.92837.071003777.88250-0.4132010.150109.35430HepG2SRFBP1
GTF3C2ENSG00000115207.93471.688203075.593200.174702.031501.60890HepG2SRSF1
GTF3C2ENSG00000115207.92657.270103080.92960-0.213402.602301.99100HepG2SRSF5
GTF3C2ENSG00000115207.92221.401202502.11500-0.171701.993201.51030HepG2SRSF9
GTF3C2ENSG00000115207.93334.160502205.973800.595802.577201.54350HepG2TBRG4
GTF3C2ENSG00000115207.91923.434402230.36110-0.213602.409101.87550HepG2TRIM56
GTF3C2ENSG00000115207.92392.869503226.81490-0.431403.516702.56850HepG2UBE2L3
GTF3C2ENSG00000115207.91755.859502388.77070-0.444109.416308.26010HepG2UPF1
GTF3C2ENSG00000115207.91232.469201709.13250-0.471705.045903.39000K562AARS
GTF3C2ENSG00000115207.92162.656702893.60710-0.420104.404803.69650K562AQR
GTF3C2ENSG00000115207.91702.250902082.67520-0.291004.155702.96470K562BCLAF1
GTF3C2ENSG00000115207.92365.917502870.95260-0.279102.990901.75690K562CCDC124
GTF3C2ENSG00000115207.91543.635501826.03860-0.242402.702401.39820K562DDX27
GTF3C2ENSG00000115207.92128.272902571.43790-0.272903.202902.43810K562EIF2S2
GTF3C2ENSG00000115207.9959.686701398.44570-0.543203.858602.99180K562G3BP2
GTF3C2ENSG00000115207.92775.502003426.37070-0.303903.061802.26900K562GRSF1
GTF3C2ENSG00000115207.91220.173001870.06630-0.616008.924307.90310K562HNRNPC
GTF3C2ENSG00000115207.92382.553202896.50080-0.281803.298402.32460K562HNRNPU
GTF3C2ENSG00000115207.92059.881002884.66660-0.485804.619903.54630K562PCBP3
GTF3C2ENSG00000115207.91670.054802212.65220-0.405905.076303.98930K562POLR2G
GTF3C2ENSG00000115207.92460.702701971.480900.319703.034701.90120K562SAFB
GTF3C2ENSG00000115207.91816.767201450.232500.325002.628001.63670K562SRFBP1
GTF3C2ENSG00000115207.92178.271001809.973600.267102.336801.68010K562SRSF1
GTF3C2ENSG00000115207.91940.520202573.28750-0.407208.360907.19590K562UPF1
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for GTF3C2 is not available on ENCORE database.





18 RBPs can affect the splicing of GTF3C2 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SEGTF3C2ENSG00000115207.9chr2-2757318027573499275661972756644527579605275798660.412000.000030.02921includedK562TAF15
SEGTF3C2ENSG00000115207.9chr2-2757318027573499275661972756644527579605275798660.229000.000250.00675includedK562SRSF1
SEGTF3C2ENSG00000115207.9chr2-2757318027573499275661972756644527579605275798660.233000.000000.00028includedHepG2HNRNPK
SEGTF3C2ENSG00000115207.9chr2-275789532757905327566174275664452757960527579634-0.089000.001910.09263excludedHepG2AKAP1
SEGTF3C2ENSG00000115207.9chr2-275568402755686627556521275566512755846427558612-0.051000.005580.05087excludedK562AQR
SEGTF3C2ENSG00000115207.9chr2-2757318027573499275661972756644527579605275798660.153000.001560.05561includedK562FXR1
SEGTF3C2ENSG00000115207.9chr2-2757318027573266275661972756644527578953275793590.391000.001820.09776includedHepG2IGF2BP3
SEGTF3C2ENSG00000115207.9chr2-2757318027573499275661972756644527579605275798660.183000.000290.09430includedK562NCBP2
A3SSGTF3C2ENSG00000115207.9chr2-2755846427558612275584642755857327558783275588950.074000.000030.00031longerK562AQR
A3SSGTF3C2ENSG00000115207.9chr2-2755171027551861275517102755179827551987275521490.059000.000130.00110longerK562AQR
A3SSGTF3C2ENSG00000115207.9chr2-2756034727560492275603472756042527560792275609250.056000.000000.00000longerK562AQR
A3SSGTF3C2ENSG00000115207.9chr2-2756011027560233275601102756020927560347275604640.238000.000000.00000longerK562AQR
A3SSGTF3C2ENSG00000115207.9chr2-2755652127556690275565212755665127556840275568660.059000.013990.07044longerK562AQR
A3SSGTF3C2ENSG00000115207.9chr2-2756585727566079275658572756601427566174275664450.059000.000840.00593longerK562AQR
A3SSGTF3C2ENSG00000115207.9chr2-2755878327558965275587832755889527559064275592920.124000.000000.00000longerK562AQR
RIGTF3C2ENSG00000115207.9chr2-2755878327559292275587832755889527559064275592920.240000.000010.00029includedHepG2PCBP2
RIGTF3C2ENSG00000115207.9chr2-2755878327559292275587832755889527559064275592920.163000.001000.00746includedK562PUS1
RIGTF3C2ENSG00000115207.9chr2-2755878327559292275587832755889527559064275592920.069000.011890.09987includedHepG2PRPF8
RIGTF3C2ENSG00000115207.9chr2-2755878327559292275587832755889527559064275592920.128000.003700.04065includedK562AGGF1
RIGTF3C2ENSG00000115207.9chr2-2755878327559292275587832755889527559064275592920.061000.003860.04534includedHepG2PCBP1
RIGTF3C2ENSG00000115207.9chr2-2755878327559292275587832755889527559064275592920.106000.000010.00029includedHepG2QKI
RIGTF3C2ENSG00000115207.9chr2-2755878327559292275587832755889527559064275592920.099000.000080.00145includedHepG2TAF15
RIGTF3C2ENSG00000115207.9chr2-2755878327559292275587832755889527559064275592920.077000.000470.01386includedHepG2KHSRP
RIGTF3C2ENSG00000115207.9chr2-2755878327559292275587832755889527559064275592920.117000.000000.00003includedHepG2NCBP2
RIGTF3C2ENSG00000115207.9chr2-2755878327559292275587832755889527559064275592920.069000.001510.01310includedHepG2SF3B4
RIGTF3C2ENSG00000115207.9chr2-2755878327559292275587832755889527559064275592920.107000.004710.06529includedHepG2FUBP3
RIGTF3C2ENSG00000115207.9chr2-2755878327559292275587832755889527559064275592920.123000.002940.03460includedK562UTP18
RIGTF3C2ENSG00000115207.9chr2-2755878327559292275587832755889527559064275592920.185000.000000.00000includedK562AQR
MXEGTF3C2ENSG00000115207.9chr2-27556840275568662755846427558573275565212755665127558783275588950.196000.000570.015141includedK562PRPF8

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for GTF3C2 is not avaliable on ENCORE database.