CHCHD6

General Information

Gene Name       : CHCHD6
Gene ID             : ENSG00000159685.10
Essential Gene : No

Functions

Localization

Domains (AlphaFold: CHCHD6)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878CHCHD6ENSG00000159685.101.803.802.80ENCSR000AEF
HepG2CHCHD6ENSG00000159685.1021.039.1915.11ENCSR985KAT
K562CHCHD6ENSG00000159685.107.525.146.33ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for CHCHD6 is not avaliable on ENCORE database.



Proteins bound to RNA
  • CHCHD6 RNA is bound by 13 proteins.  







eCLIP assay for CHCHD6 is not avaliable on ENCORE database.





13 proteins are bound to CHCHD6 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr3126679097126679178+3'-UTR3.939333.65750K562YBX3
chr3126571489126571595+3'-UTR,CDS,intron-Proximal4.627125.27053HepG2PPIG
chr3126423178126423247+CDS,intron-Proximal3.551124.52024HepG2PPIG
chr3126482015126482195+intron-Distal5.019365.04769HepG2PTBP1
chr3126668127126668168+intron-Distal4.066173.42967K562SLTM
chr3126641545126641614+intron-Distal3.239303.92720K562TARDBP
chr3126465983126466053+intron-Distal4.790326.62827HepG2SUGP2
chr3126465254126465341+intron-Distal4.749707.09509HepG2SUGP2
chr3126465525126465581+intron-Distal4.079153.86368HepG2HNRNPM
chr3126497784126497850+intron-Distal4.070755.68627HepG2ILF3
chr3126637936126638074+intron-Distal3.090073.90146K562KHSRP
chr3126482131126482217+intron-Distal5.152188.19722HepG2PCBP2
chr3126465680126465731+intron-Distal4.151734.53347HepG2SUGP2
chr3126455109126455193+intron-Distal3.958653.27946HepG2HNRNPM
chr3126577161126577226+intron-Distal4.341633.19125K562GTF2F1
chr3126580724126580790+intron-Distal4.201693.23168HepG2DDX59
chr3126465241126465337+intron-Distal4.759406.52794HepG2MATR3
chr3126464898126464993+intron-Distal3.778876.02877HepG2SUGP2
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for CHCHD6 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for CHCHD6 is not available on ENCORE database.

  • 52 RBPs can affect the levels of CHCHD6.  








The Knockdown/knockout RNA-Seq assay for CHCHD6 is not available on ENCORE database.





52 RBPs can affect the gene expression of CHCHD6 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
CHCHD6ENSG00000159685.6397.42720262.726700.597002.892502.34950HepG2AKAP1
CHCHD6ENSG00000159685.6206.40750144.211700.517201.908701.40370HepG2BOP1
CHCHD6ENSG00000159685.6113.61840206.52400-0.862104.083803.15420HepG2CIRBP
CHCHD6ENSG00000159685.6119.50230229.63280-0.942305.050304.18990HepG2EIF4A3
CHCHD6ENSG00000159685.6208.18090294.66070-0.501202.789702.18640HepG2ETF1
CHCHD6ENSG00000159685.6253.98450161.708200.651203.525902.58220HepG2EWSR1
CHCHD6ENSG00000159685.686.96460150.04910-0.786902.719402.08350HepG2GPKOW
CHCHD6ENSG00000159685.662.63100155.23930-1.309506.125004.32040HepG2HSPD1
CHCHD6ENSG00000159685.6156.27930231.84230-0.569002.333001.72930HepG2MAGOH
CHCHD6ENSG00000159685.6136.01730233.12830-0.777303.438602.74170HepG2MATR3
CHCHD6ENSG00000159685.6134.74210212.45480-0.657002.767202.04560HepG2PABPC4
CHCHD6ENSG00000159685.6119.38340180.11600-0.593302.350601.79470HepG2PUF60
CHCHD6ENSG00000159685.6167.82500229.60700-0.452201.894801.37160HepG2RECQL
CHCHD6ENSG00000159685.6102.07510178.79340-0.808703.763302.98640HepG2RPLP0
CHCHD6ENSG00000159685.6182.0304089.784701.019506.264605.35480HepG2SAFB2
CHCHD6ENSG00000159685.680.93400135.96580-0.748402.706101.77800HepG2SERBP1
CHCHD6ENSG00000159685.6158.84550230.61090-0.537802.428801.86990HepG2SF3B4
CHCHD6ENSG00000159685.6175.81250110.897700.664702.530401.61730HepG2SMNDC1
CHCHD6ENSG00000159685.6131.45110240.71290-0.872805.143004.54960HepG2SRSF1
CHCHD6ENSG00000159685.687.59560195.83710-1.160708.098707.24290HepG2SRSF9
CHCHD6ENSG00000159685.6168.38400241.47410-0.520102.813602.29810HepG2SSB
CHCHD6ENSG00000159685.6175.9982098.842000.832304.574303.88600HepG2TRIM56
CHCHD6ENSG00000159685.6123.07110199.24940-0.695103.120602.45580HepG2U2AF1
CHCHD6ENSG00000159685.678.77750120.88110-0.617702.003901.41820HepG2ZC3H8
CHCHD6ENSG00000159685.6513.25590224.899201.1903017.7248016.41050K562AGGF1
CHCHD6ENSG00000159685.6460.88070234.021800.9777010.019008.67390K562AKAP8L
CHCHD6ENSG00000159685.699.60580225.01270-1.175706.261505.43850K562AQR
CHCHD6ENSG00000159685.6379.08180245.552700.626405.043203.76890K562ATP5C1
CHCHD6ENSG00000159685.6144.89090208.74670-0.526802.244801.50340K562EIF4A3
CHCHD6ENSG00000159685.6197.53040104.084800.924204.924003.76950K562FIP1L1
CHCHD6ENSG00000159685.699.30490217.08630-1.128307.908706.95420K562FXR1
CHCHD6ENSG00000159685.617.1712068.71790-2.000702.324101.68400K562G3BP2
CHCHD6ENSG00000159685.668.71920171.84870-1.322405.245904.44830K562HNRNPC
CHCHD6ENSG00000159685.6195.49680123.841500.658603.222601.90990K562IGF2BP3
CHCHD6ENSG00000159685.6443.28150248.341700.835807.405505.89320K562KIF1C
CHCHD6ENSG00000159685.689.90170166.65900-0.890502.779501.38780K562LARP7
CHCHD6ENSG00000159685.6349.38470237.735400.555403.099201.94420K562MAK16
CHCHD6ENSG00000159685.6458.94190278.207400.722106.195204.72910K562MBNL1
CHCHD6ENSG00000159685.6140.96100203.22130-0.527802.267101.53280K562MTPAP
CHCHD6ENSG00000159685.6338.11470195.004400.793904.272503.10540K562NAA15
CHCHD6ENSG00000159685.6426.27930182.529701.223606.334604.65330K562PABPN1
CHCHD6ENSG00000159685.676.83470162.50900-1.080704.855703.75700K562PCBP3
CHCHD6ENSG00000159685.661.73650124.64970-1.013704.127903.14630K562POLR2G
CHCHD6ENSG00000159685.6216.40900118.151400.873004.406403.33850K562PPIG
CHCHD6ENSG00000159685.6183.46350312.65240-0.769104.658503.60250K562PUF60
CHCHD6ENSG00000159685.6484.00190232.057001.0604010.138609.14480K562PUS1
CHCHD6ENSG00000159685.6390.77490226.128100.789103.944503.25210K562RBM15
CHCHD6ENSG00000159685.6123.95980222.80560-0.845905.156204.06940K562SF3A3
CHCHD6ENSG00000159685.6209.58530115.095000.864604.821103.36510K562SRSF5
CHCHD6ENSG00000159685.682.54350141.88110-0.781502.993701.40720K562SRSF9
CHCHD6ENSG00000159685.671.55960125.02730-0.805002.846702.01380K562SYNCRIP
CHCHD6ENSG00000159685.6204.33670118.923500.780803.987902.97900K562TIA1
CHCHD6ENSG00000159685.678.98550148.20820-0.908002.884301.92870K562TIAL1
CHCHD6ENSG00000159685.6168.61190239.41450-0.505802.556201.86500K562UPF1
CHCHD6ENSG00000159685.6143.59850213.03230-0.569002.963402.08750K562WDR43
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for CHCHD6 is not available on ENCORE database.





2 RBPs can affect the splicing of CHCHD6 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SECHCHD6ENSG00000159685.6chr3+1264991821264992731264519201264520651265714891265715730.099000.000410.00572includedK562AQR
SECHCHD6ENSG00000159685.6chr3+126449403126449473126445920126446029126451920126452065-0.092000.012240.09531excludedK562AQR
SECHCHD6ENSG00000159685.6chr3+1264991821264992731264519201264520651265714891265715730.059000.001390.07131includedHepG2NCBP2

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for CHCHD6 is not avaliable on ENCORE database.