CD47

General Information

Gene Name       : CD47
Gene ID             : ENSG00000196776.15
Essential Gene : No

Functions

Localization

Domains (AlphaFold: CD47)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878CD47ENSG00000196776.1566.4252.6059.51ENCSR000AEF
HepG2CD47ENSG00000196776.152.463.062.76ENCSR985KAT
K562CD47ENSG00000196776.1527.5224.3925.95ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for CD47 is not avaliable on ENCORE database.



Proteins bound to RNA
  • CD47 RNA is bound by 8 proteins.  







eCLIP assay for CD47 is not avaliable on ENCORE database.





8 proteins are bound to CD47 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr3107763860107763932-3'-UTR,intron-Distal4.106334.12025K562YBX3
chr3107765921107765975-3'-UTR,intron-Distal,intron-Proximal,polyA_site3.764033.90146K562KHSRP
chr3107766069107766150-3'-UTR,CDS,intron-Distal3.700263.06676K562U2AF2
chr3107763495107763611-3'-UTR,intron-Distal4.004283.76275K562PTBP1
chr3107768441107768528-CDS,intron-Distal,intron-Proximal7.4297233.77613K562QKI
chr3107809708107809756-CDS,intron-Distal4.232409.06301K562DDX3X
chr3107770771107770826-CDS,intron-Distal,intron-Proximal4.252753.06676K562U2AF2
chr3107799164107799191-CDS,intron-Distal3.917315.82148K562DDX3X
chr3107776271107776329-CDS,intron-Distal,intron-Proximal3.922485.55177K562PRPF8
chr3107770643107770707-intron-Distal,intron-Proximal4.085396.19377K562KHSRP
chr3107789763107789904-intron-Distal,intron-Proximal3.953183.02181K562PRPF8
chr3107789788107789908-intron-Distal,intron-Proximal3.685104.70224K562KHSRP
chr3107798646107798750-intron-Distal,intron-Proximal4.631306.27552K562KHSRP
chr3107769675107769857-intron-Distal3.402378.65886K562KHSRP
chr3107766773107766893-intron-Distal3.734633.25055K562U2AF2
chr3107769347107769402-intron-Distal,intron-Proximal4.590115.43878K562TIA1
chr3107769578107769663-intron-Distal4.548587.90406K562QKI
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for CD47 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for CD47 is not available on ENCORE database.

  • 63 RBPs can affect the levels of CD47.  








The Knockdown/knockout RNA-Seq assay for CD47 is not available on ENCORE database.





63 RBPs can affect the gene expression of CD47 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
CD47ENSG00000196776.10470.65900144.311501.7054017.3502016.13430HepG2AKAP1
CD47ENSG00000196776.1055.92320111.81630-0.999603.361002.70840HepG2BOP1
CD47ENSG00000196776.1080.48750134.97150-0.745803.094702.39960HepG2CKAP4
CD47ENSG00000196776.10227.11550142.727900.670104.096403.22310HepG2DAZAP1
CD47ENSG00000196776.1037.57170106.81210-1.507406.260605.28870HepG2DDX21
CD47ENSG00000196776.10358.61480138.238501.3752011.8165010.60700HepG2DDX3X
CD47ENSG00000196776.1054.57070122.83240-1.170503.755502.96030HepG2EIF4B
CD47ENSG00000196776.10130.93510214.66070-0.713203.811903.12590HepG2ETF1
CD47ENSG00000196776.10236.42770109.648001.108405.143004.12310HepG2FIP1L1
CD47ENSG00000196776.1072.75610118.07760-0.698602.057701.48030HepG2G3BP1
CD47ENSG00000196776.1043.59380116.36810-1.416505.286304.41970HepG2GPKOW
CD47ENSG00000196776.1046.76310111.05210-1.247804.323803.55200HepG2HNRNPLL
CD47ENSG00000196776.10163.6135093.211200.811602.961701.68680HepG2HSPD1
CD47ENSG00000196776.1062.84210113.54260-0.853402.859202.12290HepG2IGF2BP1
CD47ENSG00000196776.10178.3129093.124800.937103.879202.39170HepG2KRR1
CD47ENSG00000196776.1071.96560127.33360-0.823202.648102.00650HepG2MAGOH
CD47ENSG00000196776.10122.2556074.506400.714402.471401.32680HepG2NAA15
CD47ENSG00000196776.10208.28040110.979200.908105.692204.87080HepG2PCBP1
CD47ENSG00000196776.10171.35040112.928400.601402.294701.78740HepG2PTBP1
CD47ENSG00000196776.10248.99200143.314300.796803.516202.76410HepG2PUM2
CD47ENSG00000196776.1064.95330124.18920-0.935103.351802.61020HepG2RPLP0
CD47ENSG00000196776.1062.51480148.38570-1.247106.046105.02590HepG2SF3A3
CD47ENSG00000196776.1055.86260128.48100-1.201603.710201.86210HepG2SLTM
CD47ENSG00000196776.1072.46250134.14060-0.888403.332102.27030HepG2SMNDC1
CD47ENSG00000196776.1058.74220122.30560-1.058003.105102.27710HepG2SNRNP70
CD47ENSG00000196776.10169.3168092.838400.866803.738702.26440HepG2SSRP1
CD47ENSG00000196776.10166.9890094.017200.828703.104701.69520HepG2SUGP2
CD47ENSG00000196776.1070.53620131.99370-0.904003.328902.36350HepG2TUFM
CD47ENSG00000196776.1061.25570139.13210-1.183502.414401.50100HepG2U2AF2
CD47ENSG00000196776.1085.17790144.85680-0.766102.636701.60660HepG2XRCC6
CD47ENSG00000196776.1057.22290144.72990-1.338708.049907.24330HepG2ZNF622
CD47ENSG00000196776.10942.44440731.929100.364602.553901.38620K562ABCF1
CD47ENSG00000196776.10824.661601044.22290-0.340602.381301.83040K562AQR
CD47ENSG00000196776.10759.35650414.475700.873409.268707.62100K562BOP1
CD47ENSG00000196776.10691.18870440.698600.649206.488905.28760K562CPSF6
CD47ENSG00000196776.101936.643701405.761300.462105.863604.44610K562CELF1
CD47ENSG00000196776.101172.16900781.800400.584209.573208.44750K562DDX47
CD47ENSG00000196776.101761.18890617.861901.5111057.3362054.99050K562EIF2S2
CD47ENSG00000196776.10560.12870745.51270-0.412502.968502.11990K562EIF4A3
CD47ENSG00000196776.101553.523901143.233300.442305.966904.60330K562EIF4G2
CD47ENSG00000196776.10831.38160448.415800.890604.715003.59670K562FMR1
CD47ENSG00000196776.10692.73040380.079500.865908.595306.88690K562FTO
CD47ENSG00000196776.10861.20820590.452300.544405.736203.71240K562FUS
CD47ENSG00000196776.10618.00750775.30450-0.327102.572601.98470K562FXR1
CD47ENSG00000196776.101206.05670843.463600.515802.067701.46880K562G3BP2
CD47ENSG00000196776.10638.02590500.915200.348902.626901.51510K562GLRX3
CD47ENSG00000196776.10583.46360420.752400.471603.196702.34510K562GPKOW
CD47ENSG00000196776.10457.22640823.36380-0.8486010.480308.98290K562GRSF1
CD47ENSG00000196776.101450.51030713.384601.0237017.4053015.53500K562HSPD1
CD47ENSG00000196776.10663.59710359.286700.885106.900405.35630K562KRR1
CD47ENSG00000196776.10747.472901015.62200-0.442304.244903.08080K562MATR3
CD47ENSG00000196776.101177.531401428.80690-0.279002.201301.40620K562MBNL1
CD47ENSG00000196776.10562.85850410.704000.454603.024702.10710K562METAP2
CD47ENSG00000196776.101583.974001218.561500.378303.091301.89310K562MSI2
CD47ENSG00000196776.10843.71740585.127000.527907.709206.55040K562NSUN2
CD47ENSG00000196776.10883.51180542.812000.702706.250804.99670K562PCBP3
CD47ENSG00000196776.10608.32080416.355800.546904.707503.66210K562POLR2G
CD47ENSG00000196776.101695.620901326.812300.353703.511702.29970K562PUM1
CD47ENSG00000196776.101862.378901299.946400.518608.407106.70510K562PUM2
CD47ENSG00000196776.10644.16400400.173600.686705.146703.79700K562SF3B1
CD47ENSG00000196776.10756.03540591.581100.353803.449802.41860K562SRPK2
CD47ENSG00000196776.101090.14590690.371800.659007.123104.90390K562SSRP1
CD47ENSG00000196776.10832.90750631.385200.399502.582301.37830K562STAU1
CD47ENSG00000196776.10784.52560980.96780-0.322402.075201.45640K562TARDBP
CD47ENSG00000196776.101058.04420844.780800.324702.833402.02020K562U2AF2
CD47ENSG00000196776.10923.66670620.425000.574002.927302.18870K562UPF1
CD47ENSG00000196776.10918.65210627.471000.549902.721701.53100K562UTP3
CD47ENSG00000196776.10805.31490530.874000.601106.380705.01850K562WDR3
CD47ENSG00000196776.10792.53050552.075300.521506.977105.68990K562WDR43
CD47ENSG00000196776.101633.128801176.284900.473305.108903.87780K562ZC3H8
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for CD47 is not available on ENCORE database.





15 RBPs can affect the splicing of CD47 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SECD47ENSG00000196776.10chr3-1077707851077708171077621451077661391077763231077764160.170000.003680.05945includedK562SRSF1
SECD47ENSG00000196776.10chr3-1077707851077708171077621451077661391077763231077764160.248000.000160.03898includedK562FTO
SECD47ENSG00000196776.10chr3-107770785107770817107762145107766139107776323107776416-0.332000.000030.00124excludedK562SF3B4
SECD47ENSG00000196776.10chr3-107770785107770817107762145107766139107776323107776416-0.301000.000010.00125excludedK562PRPF8
SECD47ENSG00000196776.10chr3-1077707851077708171077621451077661391077763231077764160.263000.000020.00490includedK562FMR1
SECD47ENSG00000196776.10chr3-107770785107770817107762145107766139107776323107776416-0.731000.000490.00766excludedHepG2U2AF2
SECD47ENSG00000196776.10chr3-1077707851077708171077621451077661391077763231077764160.279000.000010.00452includedK562METAP2
SECD47ENSG00000196776.10chr3-1077743661077744131077707851077708171077763231077764160.299000.002920.02998includedK562AQR
SECD47ENSG00000196776.10chr3-107770785107770817107762145107766139107776323107776416-0.431000.000000.00000excludedK562PUS1
SECD47ENSG00000196776.10chr3-107770785107770817107762145107766139107776323107776416-0.266000.000480.02942excludedK562EFTUD2
SECD47ENSG00000196776.10chr3-107770785107770817107762145107766139107776323107776416-0.375000.000010.00037excludedK562U2AF1
SECD47ENSG00000196776.10chr3-1077707851077708171077621451077661391077763231077764160.215000.000020.01593includedK562PPIL4
SECD47ENSG00000196776.10chr3-107770785107770817107762145107766139107776323107776416-0.483000.000000.00000excludedK562U2AF2
SECD47ENSG00000196776.10chr3-107770785107770817107762145107766139107776323107776416-0.355000.000010.00108excludedK562TARDBP
SECD47ENSG00000196776.10chr3-107770785107770817107762145107766139107776323107776416-0.309000.000050.00240excludedK562RBM15
SECD47ENSG00000196776.10chr3-1077707851077708171077621451077661391077763231077764160.306000.000000.00003includedK562CPSF6

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for CD47 is not avaliable on ENCORE database.