CCNK

General Information

Gene Name       : CCNK
Gene ID             : ENSG00000090061.17
Essential Gene : Yes

Functions

Localization

Domains (AlphaFold: CCNK)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878CCNKENSG00000090061.1753.7359.8956.81ENCSR000AEF
HepG2CCNKENSG00000090061.1720.1534.7627.45ENCSR985KAT
K562CCNKENSG00000090061.1753.9256.6255.27ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for CCNK is not avaliable on ENCORE database.



Proteins bound to RNA
  • CCNK RNA is bound by 19 proteins.  







eCLIP assay for CCNK is not avaliable on ENCORE database.





19 proteins are bound to CCNK RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr149997766399977713+3'-UTR,intron-Distal5.595459.09688K562ZC3H11A
chr149997745799977580+3'-UTR,intron-Distal3.7757012.96384K562IGF2BP1
chr149997773299977809+3'-UTR,intron-Distal5.5618813.91986K562PUM2
chr149995896299959100+3'-UTR,5'-UTR,CDS,intron-Proximal3.038255.39072HepG2GRWD1
chr149997715699977227+3'-UTR,intron-Distal3.5934812.19590K562CSTF2T
chr149997766799977680+3'-UTR,intron-Distal3.002533.76927K562PABPC4
chr149997768099977705+3'-UTR,intron-Distal3.891086.92152K562PABPC4
chr149997763199977665+3'-UTR,intron-Distal3.651156.15559K562PABPC4
chr149997715299977223+3'-UTR,intron-Distal3.6461811.39861HepG2DDX59
chr149997704999977119+3'-UTR,CDS,intron-Distal3.444646.87667K562CSTF2T
chr149997726799977371+3'-UTR,intron-Distal3.000466.10098K562IGF2BP1
chr149995896699959085+3'-UTR,5'-UTR,CDS3.788664.51739HepG2BCLAF1
chr149994777699947820+5'-UTR,intron-Proximal3.810033.12746HepG2GRWD1
chr149997693699977023+CDS,intron-Distal4.1908117.62654HepG2PCBP2
chr149996932099969374+CDS,intron-Proximal4.411558.96422HepG2PRPF8
chr149997693399977038+CDS,intron-Distal3.9539819.26743K562PCBP1
chr149995987399959933+CDS,intron-Proximal3.482355.10442K562YBX3
chr149997693699977049+CDS,intron-Distal3.859286.62443K562CSTF2T
chr149996191699961972+CDS,intron-Proximal3.474134.74886HepG2BCLAF1
chr149996913699969199+CDS3.6522812.00151K562IGF2BP1
chr149996910699969206+CDS4.162524.62953HepG2IGF2BP3
chr149996863099968693+CDS3.055973.90285K562IGF2BP1
chr149996926899969327+CDS,intron-Proximal3.485278.21285K562ZNF622
chr149996919999969275+CDS3.188795.63059K562IGF2BP1
chr149996712899967202+CDS3.543574.70209K562YBX3
chr149997343699973484+CDS3.935855.19548K562IGF2BP2
chr149997692099977049+CDS,intron-Distal5.0550131.68647HepG2DDX59
chr149997649299976544+CDS,intron-Distal,intron-Proximal4.266997.88838K562IGF2BP2
chr149997683699976891+CDS,intron-Distal5.2010116.32304HepG2PCBP2
chr149997704999977108+CDS,intron-Distal5.8128911.53614HepG2DDX59
chr149996932099969364+CDS,intron-Proximal4.149865.35619K562AQR
chr149996910599969169+CDS6.1837821.50392K562IGF2BP2
chr149996916999969198+CDS5.4071311.30009K562IGF2BP2
chr149997675199976809+CDS,intron-Distal4.445268.88051HepG2PCBP2
chr149996909799969207+CDS5.1276619.84582HepG2IGF2BP1
chr149996919499969260+CDS3.306144.59873K562UCHL5
chr149997703899977090+CDS,intron-Distal4.346827.53682K562PCBP1
chr149996919899969320+CDS3.2891113.03465K562IGF2BP2
chr149997345599973522+CDS,intron-Proximal3.089003.41741HepG2PRPF8
chr149996994799969964+CDS,intron-Proximal3.292393.02345K562ZNF622
chr149997682699976917+CDS,intron-Distal4.727033.57018HepG2HNRNPK
chr149996183499961875+CDS,intron-Proximal4.191293.43253K562YBX3
chr149997702599977107+CDS,intron-Distal4.097348.81166K562ILF3
chr149997654499976649+CDS,intron-Distal3.023464.15383K562IGF2BP2
chr149996908499969136+CDS3.972408.92556K562IGF2BP1
chr149997649199976583+CDS,intron-Distal,intron-Proximal3.089214.83973K562ZNF622
chr149997672999976785+CDS,intron-Distal3.149846.58490K562IGF2BP2
chr149997702699977091+CDS,intron-Distal3.473164.80214K562HNRNPK
chr149996865999968700+CDS3.773803.18462K562IGF2BP2
chr149997693899977005+CDS,intron-Distal3.446097.41257K562ILF3
chr149996183299961883+CDS,intron-Proximal3.166465.89932K562ZNF622
chr149997691799977010+CDS,intron-Distal3.605006.34873HepG2HNRNPK
chr149996870599968759+CDS,intron-Proximal4.815226.26248HepG2PRPF8
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for CCNK is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for CCNK is not available on ENCORE database.

  • 60 RBPs can affect the levels of CCNK.  








The Knockdown/knockout RNA-Seq assay for CCNK is not available on ENCORE database.





60 RBPs can affect the gene expression of CCNK :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
CCNKENSG00000090061.131379.932201062.625800.376905.496604.69700HepG2ACO1
CCNKENSG00000090061.13879.941201123.69970-0.352801.946401.49100HepG2AKAP1
CCNKENSG00000090061.13622.65420836.98650-0.426802.837201.92730HepG2BCLAF1
CCNKENSG00000090061.131405.913101062.353200.404106.676005.72480HepG2CKAP4
CCNKENSG00000090061.131093.266201398.82850-0.355605.135004.17140HepG2DAZAP1
CCNKENSG00000090061.131353.606201692.56160-0.322402.381901.44110HepG2DDX5
CCNKENSG00000090061.13721.04190922.02440-0.354702.479001.54950HepG2DHX30
CCNKENSG00000090061.131126.45420822.927600.452903.357402.36640HepG2EIF3D
CCNKENSG00000090061.131271.40630982.145500.372302.288601.70480HepG2EIF4A3
CCNKENSG00000090061.13887.508001322.05820-0.575005.869804.70300HepG2EIF4G2
CCNKENSG00000090061.13924.79870732.686500.335802.072001.30210HepG2GEMIN5
CCNKENSG00000090061.132429.007103951.55310-0.702102.935802.27810HepG2GPKOW
CCNKENSG00000090061.131189.06300931.341300.352302.465901.80460HepG2HNRNPK
CCNKENSG00000090061.131353.86670934.463600.534804.794303.92720HepG2IGF2BP2
CCNKENSG00000090061.131621.98780997.108400.701804.558703.76660HepG2MATR3
CCNKENSG00000090061.131398.10520947.489000.561202.922802.00950HepG2PABPC1
CCNKENSG00000090061.131155.48300906.096500.350704.038903.33330HepG2PCBP1
CCNKENSG00000090061.131073.68970921.999700.219601.935501.46270HepG2PTBP1
CCNKENSG00000090061.131113.290201405.65240-0.336404.862204.12150HepG2PUM1
CCNKENSG00000090061.13657.09270975.98260-0.570802.714002.01580HepG2RAVER1
CCNKENSG00000090061.132358.596301952.883700.272202.646501.80510HepG2RBM15
CCNKENSG00000090061.131964.524501384.580100.504608.617007.82060HepG2RBM22
CCNKENSG00000090061.132334.694301675.624800.478405.207604.30910HepG2RPLP0
CCNKENSG00000090061.131498.42230800.827800.9038016.0605014.75090HepG2RPS19
CCNKENSG00000090061.13793.991801041.09400-0.390902.027001.34240HepG2RPS3A
CCNKENSG00000090061.13973.09940722.576500.429302.436901.69500HepG2RRP9
CCNKENSG00000090061.132995.561501612.437900.893509.213507.92660HepG2SF3A3
CCNKENSG00000090061.131153.24930959.898000.264702.472501.90900HepG2SF3B4
CCNKENSG00000090061.131086.493201269.70450-0.224802.140801.50980HepG2SLBP
CCNKENSG00000090061.131808.277801563.825700.209402.393801.91630HepG2SRFBP1
CCNKENSG00000090061.131518.290401001.935000.5996011.6618010.83440HepG2SRSF1
CCNKENSG00000090061.131035.26640815.135500.344803.918103.28450HepG2SRSF9
CCNKENSG00000090061.13630.37410900.60400-0.514706.054805.27870HepG2TAF15
CCNKENSG00000090061.131590.535901036.092900.618309.917409.07440HepG2TIAL1
CCNKENSG00000090061.132776.273601631.897700.766505.761804.87220HepG2U2AF1
CCNKENSG00000090061.134961.330401889.672101.392505.837904.35480HepG2U2AF2
CCNKENSG00000090061.131104.044601429.98810-0.373205.336004.41720HepG2UPF1
CCNKENSG00000090061.132135.201801380.593900.6290016.1992014.92690HepG2UTP3
CCNKENSG00000090061.131448.848201073.439500.432602.413901.42620HepG2XRCC6
CCNKENSG00000090061.132397.226801572.710000.608006.036305.31050HepG2ZNF622
CCNKENSG00000090061.133221.912302555.837500.334005.968905.18530K562AGGF1
CCNKENSG00000090061.133387.849302258.747400.584708.033607.12150K562AQR
CCNKENSG00000090061.131897.048801227.389000.628105.167003.62780K562CCAR1
CCNKENSG00000090061.133241.021704860.93350-0.5848011.347909.74460K562CPSF6
CCNKENSG00000090061.132102.027301374.177300.613102.938401.56550K562DHX30
CCNKENSG00000090061.133677.491902861.758800.361705.541804.24910K562DKC1
CCNKENSG00000090061.131636.374001220.257200.423203.481702.45230K562EFTUD2
CCNKENSG00000090061.131644.965001308.323400.330202.805501.97820K562EIF4A3
CCNKENSG00000090061.132556.301903161.98180-0.306804.412003.23830K562EIF4G2
CCNKENSG00000090061.131589.473101360.606300.224202.113901.57220K562FXR1
CCNKENSG00000090061.131866.794602463.67260-0.400204.552703.58570K562GRSF1
CCNKENSG00000090061.131755.807001384.113300.343102.467701.30840K562HNRNPK
CCNKENSG00000090061.131810.359101456.535400.313602.852101.99740K562MAGOH
CCNKENSG00000090061.134003.010103161.745700.340303.801202.70620K562MBNL1
CCNKENSG00000090061.131939.643801423.885100.445905.568603.58710K562PCBP1
CCNKENSG00000090061.131610.096301295.907000.313102.514101.58310K562PCBP2
CCNKENSG00000090061.131744.635301187.456300.555005.710504.63220K562PRPF8
CCNKENSG00000090061.132875.349303595.44650-0.322404.735703.46810K562PUM2
CCNKENSG00000090061.133637.214302637.440800.463605.369904.64490K562PUS1
CCNKENSG00000090061.133325.898502569.806600.372005.627604.80730K562RBM15
CCNKENSG00000090061.132354.147901696.970300.472103.652202.40120K562SAFB
CCNKENSG00000090061.132442.647801754.256900.477502.845501.37750K562SDAD1
CCNKENSG00000090061.131577.564501186.797600.410504.690303.56640K562SF3B4
CCNKENSG00000090061.134413.112002649.217300.736103.258101.88270K562SNRNP200
CCNKENSG00000090061.131690.640301305.121500.373303.329102.17910K562SRFBP1
CCNKENSG00000090061.131922.670301541.910100.318302.761701.81740K562TRIM56
CCNKENSG00000090061.131415.849001142.703700.309102.569901.79530K562U2AF2
CCNKENSG00000090061.132259.814102872.40430-0.346102.357401.69110K562UPF1
CCNKENSG00000090061.133089.041302555.696500.273302.894502.02860K562WDR43
CCNKENSG00000090061.131804.617502544.37440-0.495606.063804.70420K562ZC3H8
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for CCNK is not available on ENCORE database.





8 RBPs can affect the splicing of CCNK :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SECCNKENSG00000090061.13chr14+999676929996775099967102999672089996854399968713-0.099000.000050.00160excludedK562SRSF1
SECCNKENSG00000090061.13chr14+999676929996775099967102999672089996854399968713-0.067000.001320.02617excludedK562SF3B4
SECCNKENSG00000090061.13chr14+999676929996775099967102999672089996854399968713-0.208000.000000.00000excludedK562AQR
SECCNKENSG00000090061.13chr14+999676929996775099967102999672089996854399968713-0.108000.000020.00068excludedK562PUS1
SECCNKENSG00000090061.13chr14+999676929996775099967102999672089996854399968713-0.058000.004380.08285excludedK562RBM15
RICCNKENSG00000090061.13chr14+9996905599969981999690559996932199969947999699810.059000.000000.00000includedK562PUS1
RICCNKENSG00000090061.13chr14+999671029996871399967102999672089996854399968713-0.598000.005970.06221excludedK562PRPF8
RICCNKENSG00000090061.13chr14+9996710299968713999671029996720899968543999687130.755000.001850.05443includedHepG2MATR3
RICCNKENSG00000090061.13chr14+9996710299968713999671029996720899968543999687130.729000.005970.05779includedHepG2NCBP2
RICCNKENSG00000090061.13chr14+999671029996871399967102999672089996854399968713-0.767000.000000.00001excludedK562AQR

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for CCNK is not avaliable on ENCORE database.