APOPT1

General Information

Gene Name       : APOPT1
Gene ID             : ENSG00000256053.7
Essential Gene : No

Functions

Localization

Domains (AlphaFold: APOPT1)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878APOPT1ENSG00000256053.719.2918.6318.96ENCSR000AEF
HepG2APOPT1ENSG00000256053.77.8218.7513.29ENCSR985KAT
K562APOPT1ENSG00000256053.717.9318.3918.16ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for APOPT1 is not avaliable on ENCORE database.



Proteins bound to RNA
  • APOPT1 RNA is bound by 7 proteins.  







eCLIP assay for APOPT1 is not avaliable on ENCORE database.





7 proteins are bound to APOPT1 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr14104056657104056743+3'-UTR,intron-Distal3.373583.33377K562PUM1
chr14104056535104056707+3'-UTR,CDS,intron-Distal5.5738710.24913HepG2BCLAF1
chr14104057238104057311+3'-UTR,intron-Distal3.890183.69311HepG2CSTF2
chr14104056708104056804+3'-UTR,intron-Distal3.400533.73423K562UCHL5
chr14104056561104056726+3'-UTR,CDS,intron-Distal3.907386.62597HepG2GRWD1
chr14104056547104056599+3'-UTR,CDS,intron-Distal3.739663.60954K562PUM1
chr14104038054104038152+5'-UTR,CDS,intron-Distal3.754074.76554HepG2BCLAF1
chr14104037978104038124+5'-UTR,CDS,intron-Distal3.102513.40321HepG2GRWD1
chr14104029337104029459+5'-UTR,CDS,intron-Distal3.681984.10374K562DDX3X
chr14104029364104029407+CDS,intron-Distal5.446184.57565HepG2DDX3X
chr14104034806104034895+intron-Distal3.897024.51091HepG2HNRNPL
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for APOPT1 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for APOPT1 is not available on ENCORE database.

  • 45 RBPs can affect the levels of APOPT1.  








The Knockdown/knockout RNA-Seq assay for APOPT1 is not available on ENCORE database.





45 RBPs can affect the gene expression of APOPT1 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
APOPT1ENSG00000256053.3236.80520174.700300.438702.129501.58160HepG2ACO1
APOPT1ENSG00000256053.3204.14980288.54510-0.499202.149201.45330HepG2ASCC1
APOPT1ENSG00000256053.3365.90110266.062900.459602.954902.29450HepG2CELF1
APOPT1ENSG00000256053.3279.82340185.945200.589502.129201.44240HepG2DDX55
APOPT1ENSG00000256053.3439.79300333.574100.398702.386701.82080HepG2ETF1
APOPT1ENSG00000256053.3269.72910170.752200.659503.781302.80400HepG2EWSR1
APOPT1ENSG00000256053.3222.44460307.57650-0.467502.009501.41650HepG2FXR1
APOPT1ENSG00000256053.3195.23040285.33880-0.547502.460801.83140HepG2G3BP1
APOPT1ENSG00000256053.3222.20230316.70340-0.511302.228901.65780HepG2NCBP2
APOPT1ENSG00000256053.3173.70950118.445700.552402.276701.50190HepG2PARN
APOPT1ENSG00000256053.3227.09150308.36010-0.441302.529801.94270HepG2PCBP1
APOPT1ENSG00000256053.3206.44650313.75380-0.603904.015803.38330HepG2PTBP1
APOPT1ENSG00000256053.3210.29100339.83330-0.692404.828304.03710HepG2QKI
APOPT1ENSG00000256053.3312.52990143.446701.123405.696004.70680HepG2RAVER1
APOPT1ENSG00000256053.3478.21570278.801800.778307.416406.66430HepG2RBM22
APOPT1ENSG00000256053.3202.82170308.40920-0.604603.552802.79570HepG2RBM25
APOPT1ENSG00000256053.3210.08780349.18960-0.733005.540404.81710HepG2NELFE
APOPT1ENSG00000256053.3234.21430325.20140-0.473502.765702.14940HepG2RECQL
APOPT1ENSG00000256053.3300.54800208.866200.524902.804802.11750HepG2RPLP0
APOPT1ENSG00000256053.3232.39360154.683500.587202.137101.42870HepG2RPS2
APOPT1ENSG00000256053.3181.30710124.271900.544802.309301.71370HepG2SMN1
APOPT1ENSG00000256053.3220.55700146.348500.591602.342201.46980HepG2SMNDC1
APOPT1ENSG00000256053.3115.66250201.24860-0.799102.854302.06100HepG2SNRNP70
APOPT1ENSG00000256053.3445.19860314.888500.499503.716903.16230HepG2SRFBP1
APOPT1ENSG00000256053.3234.95060340.97660-0.537303.563403.04340HepG2SRSF1
APOPT1ENSG00000256053.3205.50820277.39370-0.432702.374401.85590HepG2SRSF9
APOPT1ENSG00000256053.3201.38540306.45440-0.605703.861303.21740HepG2TAF15
APOPT1ENSG00000256053.3108.63420191.00990-0.814202.465801.45520HepG2TBRG4
APOPT1ENSG00000256053.3180.46530264.55650-0.551902.626001.77590HepG2TUFM
APOPT1ENSG00000256053.3255.58970158.781000.686703.436702.74190HepG2U2AF1
APOPT1ENSG00000256053.3199.78290138.744600.525902.180001.63500HepG2UTP3
APOPT1ENSG00000256053.3232.16280158.051400.554603.044202.47780HepG2ZNF622
APOPT1ENSG00000256053.3380.93150280.380400.442002.837202.26260K562AGGF1
APOPT1ENSG00000256053.3397.27740306.125000.375902.342701.50880K562ATP5C1
APOPT1ENSG00000256053.3463.16460335.058300.467003.325102.01810K562CCDC124
APOPT1ENSG00000256053.3545.21400311.155900.8091010.182209.02240K562DDX47
APOPT1ENSG00000256053.3566.93440425.303500.414602.527501.80200K562GRSF1
APOPT1ENSG00000256053.3309.02240206.104300.584202.831301.88900K562HNRNPM
APOPT1ENSG00000256053.3298.86830164.863100.858104.999803.99470K562PRPF8
APOPT1ENSG00000256053.3671.39210513.322100.387202.312801.56680K562PUF60
APOPT1ENSG00000256053.3368.48460281.912600.386302.168401.63240K562RBM15
APOPT1ENSG00000256053.3332.74260167.919500.986506.237505.00330K562RPS19
APOPT1ENSG00000256053.3180.43580269.18610-0.577103.204602.32940K562SF3A3
APOPT1ENSG00000256053.3107.55070196.25670-0.867704.462803.36680K562SF3B4
APOPT1ENSG00000256053.372.57820121.46690-0.743002.281401.37040K562SRFBP1
APOPT1ENSG00000256053.3113.12690188.91290-0.739803.026302.18640K562U2AF2
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for APOPT1 is not available on ENCORE database.





26 RBPs can affect the splicing of APOPT1 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SEAPOPT1ENSG00000256053.3chr14+1040295511040297161040293891040294611040379591040381570.140000.001430.09623includedHepG2G3BP1
SEAPOPT1ENSG00000256053.3chr14+104040443104040507104037959104038157104053610104053701-0.168000.000930.01976excludedK562SF3B4
SEAPOPT1ENSG00000256053.3chr14+1040295511040297161040293891040294611040379591040381570.172000.000000.00030includedHepG2RBM22
SEAPOPT1ENSG00000256053.3chr14+1040295511040297161040293891040294611040379591040381570.181000.001160.08870includedHepG2PRPF8
SEAPOPT1ENSG00000256053.3chr14+104040443104040507104037959104038157104053610104053701-0.157000.000070.01079excludedK562XRCC6
SEAPOPT1ENSG00000256053.3chr14+1040536101040537011040404431040405071040565171040567260.071000.000240.06273includedK562WDR43
SEAPOPT1ENSG00000256053.3chr14+104040443104040507104037959104038157104053610104053701-0.211000.000010.00266excludedHepG2DDX59
SEAPOPT1ENSG00000256053.3chr14+1040545701040546201040536101040537011040565171040568620.190000.000000.00000includedHepG2U2AF2
SEAPOPT1ENSG00000256053.3chr14+1040404431040405071040379591040381571040536101040537010.169000.000090.00951includedHepG2AKAP1
SEAPOPT1ENSG00000256053.3chr14+1040295511040297161040293891040294611040379591040381570.161000.000130.01210includedHepG2AKAP1
SEAPOPT1ENSG00000256053.3chr14+1040295511040297161040293891040294611040379591040381570.081000.001190.01420includedK562AQR
SEAPOPT1ENSG00000256053.3chr14+104040443104040507104037959104038157104053610104053701-0.104000.000710.00914excludedK562AQR
SEAPOPT1ENSG00000256053.3chr14+1040295511040297161040293891040294611040379591040381570.127000.000380.02425includedHepG2PTBP1
SEAPOPT1ENSG00000256053.3chr14+104040443104040507104037959104038157104053610104053701-0.125000.000040.01472excludedK562APOBEC3C
SEAPOPT1ENSG00000256053.3chr14+104040443104040507104029323104029461104053610104053701-0.312000.000540.02651excludedHepG2MATR3
SEAPOPT1ENSG00000256053.3chr14+104040443104040507104037959104038157104053610104053701-0.144000.000650.06624excludedHepG2LARP4
SEAPOPT1ENSG00000256053.3chr14+104040443104040507104037959104038157104053610104053701-0.345000.000000.00000excludedHepG2SF3A3
SEAPOPT1ENSG00000256053.3chr14+1040404431040405071040379591040381571040536101040537010.192000.000170.01767includedHepG2IGF2BP3
SEAPOPT1ENSG00000256053.3chr14+1040295511040297161040293891040294611040379591040381570.175000.000580.05625includedHepG2SUPV3L1
SEAPOPT1ENSG00000256053.3chr14+1040457071040458281040404431040405071040536101040537010.069000.000010.00516includedK562EIF4G2
SEAPOPT1ENSG00000256053.3chr14+104040443104040507104037959104038157104053610104053701-0.234000.000020.00211excludedHepG2SF3B4
SEAPOPT1ENSG00000256053.3chr14+1040295511040297161040293891040294611040379591040381570.258000.000000.00106includedHepG2DDX55
SEAPOPT1ENSG00000256053.3chr14+1040457071040458281040404431040405071040536101040537010.134000.000770.04974includedHepG2SRSF9
SEAPOPT1ENSG00000256053.3chr14+1040295511040297161040293891040294611040379591040381570.114000.001700.08954includedHepG2SRSF9
SEAPOPT1ENSG00000256053.3chr14+1040295511040297161040293891040294611040379591040381570.162000.002360.03885includedK562HNRNPC
MXEAPOPT1ENSG00000256053.3chr14+1040379591040381571040404431040405071040293301040294611040536101040537010.207000.000180.009351includedK562PTBP1
MXEAPOPT1ENSG00000256053.3chr14+1040379591040381571040404431040405071040293301040294611040536101040537010.200000.001120.020731includedK562SRSF1
MXEAPOPT1ENSG00000256053.3chr14+1040379591040381571040404431040405071040293301040294611040536101040537010.349000.000000.000021includedK562TARDBP
MXEAPOPT1ENSG00000256053.3chr14+1040379591040381571040404431040405071040293301040294611040536101040537010.285000.000100.010731includedK562TRA2A
MXEAPOPT1ENSG00000256053.3chr14+1040379591040381571040404431040405071040293301040294611040536101040537010.254000.000090.012261includedK562RBM22
MXEAPOPT1ENSG00000256053.3chr14+1040379591040381571040404431040405071040293301040294611040536101040537010.352000.000000.000081includedK562TIA1
MXEAPOPT1ENSG00000256053.3chr14+1040379591040381571040404431040405071040293301040294611040536101040537010.273000.000010.001271includedK562IGF2BP2

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for APOPT1 is not avaliable on ENCORE database.