AC002116.8

General Information

Gene Name : AC002116.8
Gene ID :
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: AC002116.8)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for AC002116.8 is not avaliable on ENCORE database.

Proteins bound to RNA

AC002116.8 RNA is bound by 11 proteins.

eCLIP assay for AC002116.8 is not avaliable on ENCORE database.

11 proteins are bound to AC002116.8 RNA:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr19	36504673	36504760	-	5'-UTR,intron-Distal	4.02544	3.15816	HepG2	PRPF4
chr19	36504921	36505078	-	5'-UTR,CDS,intron-Distal	3.69881	3.14687	K562	CSTF2T
chr19	36501588	36501654	-	3'-UTR,intron-Distal,intron-Proximal	3.03016	3.50010	K562	AQR
chr19	36501574	36501686	-	3'-UTR,CDS,intron-Distal,intron-Proximal	4.64451	6.49770	K562	HNRNPK
chr19	36504985	36505129	-	5'-UTR,CDS,intron-Distal,intron-Proximal	4.29060	4.41148	HepG2	GTF2F1
chr19	36501886	36501942	-	3'-UTR,CDS,intron-Distal,intron-Proximal	3.12022	5.97777	HepG2	PPIG
chr19	36504246	36504318	-	5'-UTR,CDS,intron-Distal,intron-Proximal	3.67188	4.24220	K562	ZNF622
chr19	36501878	36501969	-	3'-UTR,CDS,intron-Distal,intron-Proximal	3.14847	3.89662	K562	BUD13
chr19	36504984	36505056	-	5'-UTR,intron-Distal	4.80851	6.11596	HepG2	PRPF4
chr19	36504229	36504318	-	5'-UTR,CDS,intron-Distal,intron-Proximal	3.67368	4.77136	HepG2	PPIG
chr19	36499538	36499680	-	5'-UTR,CDS,intron-Distal,intron-Proximal	3.28247	3.87702	HepG2	NCBP2
chr19	36502321	36502364	-	3'-UTR,5'-UTR,CDS,intron-Distal	3.97044	3.20743	HepG2	PPIG
chr19	36501529	36501654	-	3'-UTR,CDS,intron-Distal,intron-Proximal	4.60030	3.59236	HepG2	AQR
chr19	36503922	36503986	-	5'-UTR,CDS,intron-Distal,intron-Proximal	3.63832	4.24220	K562	ZNF622
chr19	36504242	36504321	-	5'-UTR,CDS,intron-Distal,intron-Proximal	3.64458	5.08388	K562	UCHL5
chr19	36504205	36504246	-	CDS,intron-Distal,intron-Proximal	5.09031	5.17615	K562	AQR
chr19	36501740	36501801	-	3'-UTR,CDS,intron-Distal,intron-Proximal	3.76838	4.49024	K562	AQR
chr19	36501566	36501643	-	3'-UTR,CDS,intron-Distal,intron-Proximal	3.07091	4.68262	K562	RBM15
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

eCLIP assay for AC002116.8 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for AC002116.8 is not available on ENCORE database.
31 RBPs can affect the levels of AC002116.8.

The Knockdown/knockout RNA-Seq assay for AC002116.8 is not available on ENCORE database.

31 RBPs can affect the gene expression of AC002116.8 :

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
AC002116.8	ENSG00000248101.2	29.00040	8.02160	1.85400	2.41210	1.53240	HepG2	ABCF1
AC002116.8	ENSG00000248101.2	11.26410	1.15200	3.28950	1.88140	1.36550	HepG2	RPS19
AC002116.8	ENSG00000248101.2	6.41930	0.00000	99999.99990	1.97990	1.42020	HepG2	SAFB2
AC002116.8	ENSG00000248101.2	26.61610	5.42640	2.29410	3.61330	2.21450	HepG2	STAU1
AC002116.8	ENSG00000248101.2	44.11040	12.84250	1.78010	4.07830	3.44910	HepG2	ZNF622
AC002116.8	ENSG00000248101.2	126.75330	39.30640	1.68910	9.31330	8.03220	K562	AKAP8L
AC002116.8	ENSG00000248101.2	0.00000	18.07390	-99999.99999	4.44140	3.73040	K562	AQR
AC002116.8	ENSG00000248101.2	33.61660	2.98240	3.49450	6.46560	4.73580	K562	CPEB4
AC002116.8	ENSG00000248101.2	0.00000	51.28720	-99999.99999	8.13240	4.87330	K562	DAZAP1
AC002116.8	ENSG00000248101.2	22.96160	3.07340	2.90120	3.85760	3.10640	K562	DDX47
AC002116.8	ENSG00000248101.2	40.13690	0.00000	99999.99990	12.15820	10.80500	K562	EIF2S2
AC002116.8	ENSG00000248101.2	32.33500	0.00000	99999.99990	6.03730	4.91500	K562	GRSF1
AC002116.8	ENSG00000248101.2	73.69370	0.00000	99999.99990	6.77050	3.45940	K562	HNRNPUL1
AC002116.8	ENSG00000248101.2	35.39950	0.00000	99999.99990	10.61140	7.66310	K562	LIN28B
AC002116.8	ENSG00000248101.2	13.63820	38.84520	-1.51010	2.65810	1.86500	K562	MTPAP
AC002116.8	ENSG00000248101.2	0.00000	32.74870	-99999.99999	7.42080	5.70780	K562	NAA15
AC002116.8	ENSG00000248101.2	15.91900	0.00000	99999.99990	4.74860	2.67250	K562	NUSAP1
AC002116.8	ENSG00000248101.2	10.89770	0.00000	99999.99990	3.37320	1.77510	K562	PHF6
AC002116.8	ENSG00000248101.2	32.97810	0.00000	99999.99990	8.13440	5.19560	K562	PPP1R8
AC002116.8	ENSG00000248101.2	11.84380	37.97840	-1.68100	2.69500	2.10820	K562	RBM15
AC002116.8	ENSG00000248101.2	25.53410	0.00000	99999.99990	6.41740	3.79870	K562	RBM39
AC002116.8	ENSG00000248101.2	30.22660	0.00000	99999.99990	3.50270	2.39080	K562	RCC2
AC002116.8	ENSG00000248101.2	1.39570	49.41080	-5.14580	6.21730	2.75220	K562	RTF1
AC002116.8	ENSG00000248101.2	18.99560	0.00000	99999.99990	4.66870	2.57750	K562	SBDS
AC002116.8	ENSG00000248101.2	58.63670	0.00000	99999.99990	16.49890	12.81390	K562	SFPQ
AC002116.8	ENSG00000248101.2	20.58540	0.00000	99999.99990	5.90220	3.39980	K562	SRP68
AC002116.8	ENSG00000248101.2	22.67300	0.00000	99999.99990	6.31350	4.73590	K562	SUPV3L1
AC002116.8	ENSG00000248101.2	32.99260	0.00000	99999.99990	3.01530	2.01920	K562	TRIM56
AC002116.8	ENSG00000248101.2	31.02280	0.00000	99999.99990	4.54910	2.64330	K562	TRIP6
AC002116.8	ENSG00000248101.2	14.49080	52.46690	-1.85630	2.91770	1.68080	K562	UTP3
AC002116.8	ENSG00000248101.2	31.57890	0.00000	99999.99990	9.00090	6.48180	K562	XRN2
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for AC002116.8 is not available on ENCORE database.

22 RBPs can affect the splicing of AC002116.8 :

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	2ndExonStart	2ndExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
A3SS	AC002116.8	ENSG00000248101.2	chr19	-	36501468	36501685			36501468	36501585	36501795	36501947	0.18400	0.00030	0.02805	longer	HepG2	SF3A3
A3SS	AC002116.8	ENSG00000248101.2	chr19	-	36501468	36501685			36501468	36501585	36501795	36501947	0.28700	0.00072	0.07557	longer	K562	EFTUD2
A3SS	AC002116.8	ENSG00000248101.2	chr19	-	36501468	36501685			36501468	36501585	36501795	36501947	0.23200	0.00003	0.00896	longer	HepG2	MATR3
A3SS	AC002116.8	ENSG00000248101.2	chr19	-	36501468	36501685			36501468	36501585	36501795	36501947	0.17000	0.00005	0.01692	longer	HepG2	NCBP2
A3SS	AC002116.8	ENSG00000248101.2	chr19	-	36501468	36501685			36501468	36501585	36501795	36501947	-0.22100	0.00028	0.07206	shorter	K562	DROSHA
A3SS	AC002116.8	ENSG00000248101.2	chr19	-	36501468	36501685			36501468	36501585	36501795	36501967	0.27300	0.00005	0.00045	longer	K562	AQR
A3SS	AC002116.8	ENSG00000248101.2	chr19	-	36501468	36501685			36501468	36501585	36501795	36501947	0.22300	0.00001	0.01155	longer	HepG2	FUBP3
A3SS	AC002116.8	ENSG00000248101.2	chr19	-	36501468	36501979			36501468	36501585	36502305	36502366	0.14400	0.00254	0.08532	longer	HepG2	U2AF1
A3SS	AC002116.8	ENSG00000248101.2	chr19	-	36501468	36501685			36501468	36501585	36501795	36501947	0.24900	0.00022	0.09356	longer	HepG2	G3BP1
RI	AC002116.8	ENSG00000248101.2	chr19	-	36501468	36501979			36501468	36501585	36501795	36501979	-0.14400	0.00157	0.07457	excluded	K562	DROSHA
RI	AC002116.8	ENSG00000248101.2	chr19	-	36501468	36501979			36501468	36501585	36501795	36501979	0.23000	0.00158	0.07052	included	HepG2	BCCIP
RI	AC002116.8	ENSG00000248101.2	chr19	-	36501468	36501979			36501468	36501585	36501795	36501979	0.21800	0.00001	0.00022	included	HepG2	SF3A3
RI	AC002116.8	ENSG00000248101.2	chr19	-	36501468	36501979			36501468	36501585	36501795	36501979	0.25900	0.00005	0.00388	included	K562	SF3B1
RI	AC002116.8	ENSG00000248101.2	chr19	-	36501468	36501979			36501468	36501585	36501795	36501979	0.22600	0.00941	0.08457	included	HepG2	PRPF8
RI	AC002116.8	ENSG00000248101.2	chr19	-	36501468	36501979			36501468	36501585	36501795	36501979	0.29000	0.00065	0.02467	included	HepG2	MATR3
RI	AC002116.8	ENSG00000248101.2	chr19	-	36501468	36501979			36501468	36501585	36501795	36501979	0.20900	0.00066	0.00938	included	HepG2	QKI
RI	AC002116.8	ENSG00000248101.2	chr19	-	36501468	36501979			36501468	36501585	36501795	36501979	0.22600	0.00095	0.01146	included	HepG2	TAF15
RI	AC002116.8	ENSG00000248101.2	chr19	-	36501468	36501979			36501468	36501585	36501795	36501979	0.31000	0.00000	0.00000	included	HepG2	U2AF1
RI	AC002116.8	ENSG00000248101.2	chr19	-	36501468	36501979			36501468	36501585	36501795	36501979	0.24100	0.00011	0.01953	included	K562	FTO
RI	AC002116.8	ENSG00000248101.2	chr19	-	36501468	36501979			36501468	36501585	36501795	36501979	0.18300	0.00083	0.02103	included	HepG2	KHSRP
RI	AC002116.8	ENSG00000248101.2	chr19	-	36501468	36501979			36501468	36501585	36501795	36501979	0.20400	0.00787	0.09822	included	HepG2	TIAL1
RI	AC002116.8	ENSG00000248101.2	chr19	-	36501468	36501979			36501468	36501585	36501795	36501979	0.21000	0.00008	0.00184	included	HepG2	NCBP2
RI	AC002116.8	ENSG00000248101.2	chr19	-	36501468	36501979			36501468	36501585	36501795	36501979	0.45200	0.00000	0.00000	included	HepG2	SF3B4
RI	AC002116.8	ENSG00000248101.2	chr19	-	36501468	36501979			36501468	36501585	36501795	36501979	0.33200	0.00000	0.00000	included	HepG2	FUBP3
RI	AC002116.8	ENSG00000248101.2	chr19	-	36501468	36501979			36501468	36501585	36501795	36501979	0.23100	0.00007	0.00149	included	HepG2	HNRNPK
RI	AC002116.8	ENSG00000248101.2	chr19	-	36501468	36501979			36501468	36501585	36501795	36501979	0.22800	0.00044	0.00626	included	K562	EFTUD2
RI	AC002116.8	ENSG00000248101.2	chr19	-	36501468	36501979			36501468	36501585	36501795	36501979	0.24700	0.00002	0.00017	included	K562	AQR
RI	AC002116.8	ENSG00000248101.2	chr19	-	36501468	36501979			36501468	36501547	36501795	36501979	0.19400	0.00059	0.02640	included	HepG2	XRN2
MXE	AC002116.8	ENSG00000248101.2	chr19	-	36503922	36503991	36504211	36504324	36502305	36502366	36505076	36505137	0.16100	0.00117	0.06146	1included	K562	LARP7
MXE	AC002116.8	ENSG00000248101.2	chr19	-	36503922	36503991	36504245	36504490	36502305	36502366	36505076	36505137	0.11300	0.00530	0.08392	1included	K562	SUPV3L1

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

AC002116.8

General Information

Functions

Localization

Domains (AlphaFold: AC002116.8)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for AC002116.8 is not avaliable on ENCORE database.

11 proteins are bound to AC002116.8 RNA:

eCLIP assay for AC002116.8 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for AC002116.8 is not available on ENCORE database.

31 RBPs can affect the gene expression of AC002116.8 :

The Knockdown/knockout RNA-Seq assay for AC002116.8 is not available on ENCORE database.

22 RBPs can affect the splicing of AC002116.8 :

The Knockdown/knockout RNA-Seq assay for AC002116.8 is not avaliable on ENCORE database.