ABCA11P

General Information

Gene Name       : ABCA11P
Gene ID             : ENSG00000251595.7
Essential Gene : No

Functions

Localization

Domains (AlphaFold: ABCA11P)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878ABCA11PENSG00000251595.71.791.431.61ENCSR000AEF
HepG2ABCA11PENSG00000251595.73.897.635.76ENCSR985KAT
K562ABCA11PENSG00000251595.72.712.752.73ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for ABCA11P is not avaliable on ENCORE database.



Proteins bound to RNA
  • ABCA11P RNA is bound by 31 proteins.  







eCLIP assay for ABCA11P is not avaliable on ENCORE database.





31 proteins are bound to ABCA11P RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr4436109436217-CDS,intron-Distal3.1701211.24213K562NIPBL
chr4455619455628-intron-Distal4.8270212.54773K562EXOSC5
chr4435144435215-3'-UTR,intron-Distal4.698807.75972HepG2CSTF2
chr4432511432579-intron-Distal,intron-Proximal3.396564.72639K562KHSRP
chr4452916453003-intron-Distal4.040153.60235HepG2HNRNPM
chr4463277463367-intron-Distal3.553519.09497K562KHSRP
chr4466174466222-intron-Distal3.831493.66668K562KHSRP
chr4467743467888-5'-UTR,CDS,intron-Distal,intron-Proximal3.085303.90804HepG2GRWD1
chr4456799456851-intron-Distal4.185803.51329HepG2MATR3
chr4429490429571-3'-UTR,intron-Distal,intron-Proximal3.985255.85201K562PRPF8
chr4444932444974-intron-Distal3.727575.76944HepG2U2AF2
chr4420063420101-3'-UTR,intron-Distal4.076563.26547HepG2HLTF
chr4436807436864-CDS,intron-Distal3.233433.39477K562BUD13
chr4444810444916-intron-Distal4.3728411.58574K562KHSRP
chr4452318452413-intron-Distal5.123057.78465HepG2HNRNPM
chr4444183444233-intron-Distal3.374973.56114HepG2KHSRP
chr4456091456120-intron-Distal3.465794.02190K562EXOSC5
chr4455657455664-intron-Distal5.6838412.32537K562EXOSC5
chr4443380443437-intron-Distal3.628469.20203K562KHSRP
chr4436948437008-CDS,intron-Distal3.248875.46976K562UCHL5
chr4453414453457-intron-Distal4.389794.80466K562EXOSC5
chr4422714422808-intron-Distal3.882626.35227HepG2HNRNPL
chr4466319466443-5'-UTR,CDS,intron-Distal,intron-Proximal3.800016.46787HepG2GRWD1
chr4454991455031-intron-Distal4.799976.87194K562HNRNPM
chr4442706442761-intron-Distal3.290804.52210K562KHSRP
chr4436186436244-CDS,intron-Distal3.106573.87218K562SAFB2
chr4438035438111-CDS,intron-Distal,intron-Proximal6.1393416.64708K562UCHL5
chr4451878451933-intron-Distal3.919644.94813HepG2HNRNPM
chr4431265431322-CDS,intron-Distal,intron-Proximal3.576523.35377HepG2QKI
chr4455032455131-intron-Distal5.0784213.31895HepG2HNRNPM
chr4463186463277-intron-Distal5.2503622.17857K562KHSRP
chr4435704435727-CDS,intron-Distal3.202103.02345K562ZNF622
chr4467808467943-5'-UTR,intron-Distal,intron-Proximal3.038546.28214HepG2NCBP2
chr4436138436213-CDS,intron-Distal4.8484911.96153K562ZNF622
chr4454200454279-intron-Distal3.9929211.73033HepG2MATR3
chr4443637443743-intron-Distal3.5662612.24743K562QKI
chr4437178437239-CDS,intron-Distal4.4175013.05280K562UCHL5
chr4438055438113-CDS,intron-Distal,intron-Proximal3.581603.66187K562ZNF622
chr4433686433780-3'-UTR,intron-Distal,intron-Proximal5.5257024.52182K562CSTF2T
chr4443612443674-intron-Distal4.147518.11145K562KHSRP
chr4433737433778-3'-UTR,intron-Distal,intron-Proximal5.6724535.34239HepG2CSTF2
chr4454797454847-intron-Distal4.9763211.25776K562EXOSC5
chr4433682433696-intron-Distal,intron-Proximal4.460606.62984HepG2CSTF2
chr4453934453958-intron-Distal4.560588.80920K562EXOSC5
chr4456198456243-intron-Distal4.814055.44433K562EXOSC5
chr4452252452304-intron-Distal4.719385.42395HepG2HNRNPM
chr4437059437079-CDS,intron-Distal3.135623.70975K562UCHL5
chr4455083455107-intron-Distal3.204825.36060HepG2SUGP2
chr4435923435954-CDS,intron-Distal4.579875.51215K562RBM15
chr4465288465389-intron-Distal5.7660920.76683K562QKI
chr4463279463363-intron-Distal4.838195.87902HepG2KHSRP
chr4437477437518-CDS,intron-Distal4.494808.23108K562UCHL5
chr4437523437568-CDS,intron-Distal3.001384.09838K562RBM15
chr4465494465580-intron-Distal3.507034.98593K562KHSRP
chr4433784433836-3'-UTR,intron-Distal3.578403.02234K562KHSRP
chr4443811443882-intron-Distal3.783277.06124HepG2CSTF2
chr4438398438455-intron-Distal3.154683.29213HepG2KHSRP
chr4454394454406-intron-Distal6.4442521.01239K562EXOSC5
chr4452504452549-intron-Distal3.288733.15041K562EXOSC5
chr4435922435971-CDS,intron-Distal3.032523.75707K562SAFB2
chr4454559454600-intron-Distal4.343293.72005K562MATR3
chr4438270438343-intron-Distal,intron-Proximal4.3528010.71730K562KHSRP
chr4455047455129-intron-Distal3.250447.85325HepG2MATR3
chr4435860435962-CDS,intron-Distal4.1565016.09806K562UCHL5
chr4466321466387-CDS,intron-Distal,intron-Proximal5.146716.35567HepG2PRPF8
chr4436112436264-CDS,intron-Distal5.016157.37026K562GRWD1
chr4455835455904-intron-Distal4.7681012.54773K562EXOSC5
chr4455851455920-intron-Distal4.270763.62238HepG2MATR3
chr4466254466308-intron-Distal,intron-Proximal4.267203.85435K562PRPF8
chr4435898435976-CDS,intron-Distal4.7381711.98007K562ZNF622
chr4455618455667-intron-Distal3.100095.10681HepG2SUGP2
chr4436798436842-CDS,intron-Distal3.290705.41277K562UCHL5
chr4437911437959-CDS,intron-Distal3.129994.08075K562SAFB2
chr4438139438213-CDS,intron-Distal4.054106.23296HepG2BCLAF1
chr4438151438235-3'-UTR,CDS,intron-Distal,intron-Proximal3.344515.79202HepG2U2AF2
chr4433695433768-intron-Distal,intron-Proximal3.457274.54121HepG2KHSRP
chr4436182436246-CDS,intron-Distal6.2817819.66257K562UCHL5
chr4431305431394-intron-Distal,intron-Proximal4.905885.58608K562QKI
chr4455039455102-intron-Distal5.2145420.57628K562EXOSC5
chr4453984454013-intron-Distal5.6517712.32698K562EXOSC5
chr4465291465368-intron-Distal5.9896225.21094HepG2QKI
chr4454789454843-intron-Distal4.909814.78076K562HNRNPM
chr4443296443356-intron-Distal3.547708.44734K562KHSRP
chr4438146438219-CDS,intron-Distal3.245877.58463K562ZNF622
chr4438148438173-CDS,intron-Distal3.282506.56546K562RBM15
chr4433696433737-intron-Distal,intron-Proximal6.8943743.65761HepG2CSTF2
chr4432198432262-intron-Distal3.778043.45805K562KHSRP
chr4452924452991-intron-Distal4.115637.01333K562EXOSC5
chr4444835444901-intron-Distal4.599175.91714HepG2KHSRP
chr4453958453984-intron-Distal4.8649012.22629K562EXOSC5
chr4454406454420-intron-Distal6.4532121.01239K562EXOSC5
chr4454991455032-intron-Distal4.880346.71101HepG2HNRNPM
chr4452261452334-intron-Distal5.053577.06134K562EXOSC5
chr4457523457578-intron-Distal3.298656.09990HepG2HNRNPK
chr4459105459177-intron-Distal3.350828.90813HepG2ILF3
chr4454202454282-intron-Distal5.9572529.68288K562EXOSC5
chr4454786454848-intron-Distal3.857904.80552HepG2EXOSC5
chr4463211463279-intron-Distal3.804106.09419HepG2KHSRP
chr4437113437178-CDS,intron-Distal4.7893310.01989K562UCHL5
chr4433862433980-3'-UTR,intron-Distal3.195494.40947HepG2KHSRP
chr4437036437053-CDS,intron-Distal3.978373.11168K562ZNF622
chr4438022438097-CDS,intron-Distal,intron-Proximal4.496254.57831K562CPSF6
chr4455031455100-intron-Distal5.457139.21000K562HNRNPM
chr4454994455028-intron-Distal5.410709.02315K562EXOSC5
chr4454556454603-intron-Distal5.008646.19745HepG2HNRNPM
chr4453954454035-intron-Distal3.197763.45178K562MATR3
chr4436063436186-CDS,intron-Distal4.2281910.21775K562SAFB2
chr4456799456844-intron-Distal3.957253.01456K562EXOSC5
chr4426963427071-intron-Distal4.627165.02084HepG2HNRNPM
chr4437486437535-CDS,intron-Distal3.889935.96588K562ZNF622
chr4438141438200-CDS,intron-Distal3.450828.23358K562UCHL5
chr4436073436182-CDS,intron-Distal5.2282224.31953K562UCHL5
chr4444128444169-intron-Distal3.499785.32884K562KHSRP
chr4467749467770-intron-Distal3.604596.21987K562AQR
chr4466246466347-intron-Distal,intron-Proximal4.593786.30839HepG2TIAL1
chr4440961441043-intron-Distal3.558103.58557HepG2ILF3
chr4433687433759-intron-Distal,intron-Proximal3.936014.32606HepG2CDC40
chr4467727467743-intron-Distal4.626137.50107K562AQR
chr4438291438398-intron-Distal,intron-Proximal3.808745.34065HepG2KHSRP
chr4465610465679-intron-Distal3.910716.69500K562KHSRP
chr4433844433872-3'-UTR,intron-Distal3.696293.25538K562KHSRP
chr4455673455708-intron-Distal3.799504.91037K562EXOSC5
chr4454204454285-intron-Distal3.171786.13708HepG2SUGP2
chr4436091436203-CDS,intron-Distal3.387453.99201HepG2RBM22
chr4443491443578-intron-Distal3.9814111.77769K562KHSRP
chr4432367432441-CDS,intron-Distal,intron-Proximal3.396737.61934HepG2U2AF2
chr4454798454857-intron-Distal3.063245.58751HepG2MATR3
chr4452916452987-intron-Distal3.478284.28254HepG2MATR3
chr4452103452180-intron-Distal3.506185.08575HepG2SUGP2
chr4444190444243-intron-Distal4.857038.49499K562KHSRP
chr4455628455657-intron-Distal4.8730913.19522K562EXOSC5
chr4462186462221-intron-Distal3.446478.07595HepG2HNRNPC
chr4431322431391-intron-Distal,intron-Proximal4.836417.75161HepG2QKI
chr4456551456580-intron-Distal4.581215.44433K562EXOSC5
chr4433872433943-3'-UTR,intron-Distal4.056518.86302K562KHSRP
chr4457502457587-intron-Distal5.7361611.88842HepG2PCBP2
chr4439186439263-intron-Distal4.299444.80438HepG2KHSRP
chr4454556454606-intron-Distal5.3484020.06578K562EXOSC5
chr4462157462186-intron-Distal3.357367.31686HepG2HNRNPC
chr4447630447674-intron-Distal4.305413.97018HepG2HNRNPM
chr4454212454291-intron-Distal3.604277.19265K562MATR3
chr4431241431308-3'-UTR,CDS,intron-Distal,intron-Proximal4.382003.20743HepG2PPIG
chr4454569454606-intron-Distal3.473254.70712HepG2MATR3
chr4456193456248-intron-Distal4.350894.12480HepG2HNRNPM
chr4443816443881-intron-Distal4.944137.00634K562KHSRP
chr4444928444978-intron-Distal3.450405.35459K562KHSRP
chr4437645437701-CDS,intron-Distal3.787395.83487K562RBM15
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for ABCA11P is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for ABCA11P is not available on ENCORE database.

  • 54 RBPs can affect the levels of ABCA11P.  








The Knockdown/knockout RNA-Seq assay for ABCA11P is not available on ENCORE database.





54 RBPs can affect the gene expression of ABCA11P :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
ABCA11PENSG00000251595.3160.8255092.478800.798203.048102.22480HepG2ASCC1
ABCA11PENSG00000251595.3167.32640107.218900.642002.909102.23130HepG2CKAP4
ABCA11PENSG00000251595.3129.7654077.232600.748502.686601.62380HepG2CSTF2
ABCA11PENSG00000251595.3190.4155092.370701.043505.538204.61330HepG2DDX21
ABCA11PENSG00000251595.3160.49650107.066100.583901.843601.32170HepG2DDX3X
ABCA11PENSG00000251595.3164.27640102.579500.679302.829302.14500HepG2DKC1
ABCA11PENSG00000251595.3293.4900097.710701.5866013.2445011.86840HepG2EIF4A3
ABCA11PENSG00000251595.3234.9636095.131901.304306.905105.84960HepG2EIF4B
ABCA11PENSG00000251595.3496.37320235.406901.0762014.8101013.59810HepG2ETF1
ABCA11PENSG00000251595.3201.88890104.792000.945903.046502.17170HepG2EWSR1
ABCA11PENSG00000251595.387.5991045.111200.957302.619801.85440HepG2FUBP3
ABCA11PENSG00000251595.3228.1569097.083501.232607.601206.11070HepG2G3BP2
ABCA11PENSG00000251595.3102.3878056.722300.852002.427801.59340HepG2GEMIN5
ABCA11PENSG00000251595.3154.9804096.727000.680002.515301.55070HepG2GNB2L1
ABCA11PENSG00000251595.3133.1145086.547700.621001.851001.30990HepG2HNRNPA1
ABCA11PENSG00000251595.3148.5883096.270500.626101.950201.35670HepG2HNRNPC
ABCA11PENSG00000251595.3152.9824092.958800.718602.504901.85920HepG2IGF2BP2
ABCA11PENSG00000251595.3189.1519087.234101.116502.846101.85000HepG2IGF2BP3
ABCA11PENSG00000251595.3205.9676093.498901.139305.595704.11830HepG2KHSRP
ABCA11PENSG00000251595.3195.22760114.811900.765802.819701.98270HepG2LARP4
ABCA11PENSG00000251595.3254.2700098.615401.366407.771406.68680HepG2MAGOH
ABCA11PENSG00000251595.3164.7855099.168100.732502.475801.87580HepG2MATR3
ABCA11PENSG00000251595.3204.98220101.504801.013905.073904.22770HepG2NCBP2
ABCA11PENSG00000251595.3139.4357090.399600.625101.939701.32600HepG2PABPC4
ABCA11PENSG00000251595.3197.7946097.577401.019306.676205.79540HepG2PCBP1
ABCA11PENSG00000251595.3215.31420125.844800.774703.135301.84700HepG2PRPF6
ABCA11PENSG00000251595.3186.6163094.838600.976404.473903.47340HepG2PRPF8
ABCA11PENSG00000251595.3191.8108099.298000.949705.608004.88450HepG2PTBP1
ABCA11PENSG00000251595.3172.60260109.205300.660303.098602.45450HepG2PUS1
ABCA11PENSG00000251595.3240.1243097.591001.298909.884808.66660HepG2RBM25
ABCA11PENSG00000251595.3208.07830110.501400.913005.116804.41770HepG2NELFE
ABCA11PENSG00000251595.3192.13480102.931000.900304.931404.13910HepG2RECQL
ABCA11PENSG00000251595.3165.10160105.379900.647702.270301.54040HepG2RPS2
ABCA11PENSG00000251595.3141.4907077.552800.867403.014502.18050HepG2RPS3A
ABCA11PENSG00000251595.336.3932085.16490-1.226604.211303.44530HepG2SAFB2
ABCA11PENSG00000251595.3207.66520133.268400.639802.554401.90660HepG2SF3A3
ABCA11PENSG00000251595.3158.28120103.365400.614602.324101.77610HepG2SF3B4
ABCA11PENSG00000251595.3237.48430107.897901.138108.033607.32450HepG2SRSF1
ABCA11PENSG00000251595.3343.54580192.962900.832107.770406.99590HepG2SSB
ABCA11PENSG00000251595.3148.3784097.001600.613102.389301.86190HepG2TAF15
ABCA11PENSG00000251595.3180.0369075.278401.257904.742803.37730HepG2TBRG4
ABCA11PENSG00000251595.325.1977091.74740-1.864407.164006.31430K562AGGF1
ABCA11PENSG00000251595.334.8167095.46590-1.455205.317304.39510K562AKAP8L
ABCA11PENSG00000251595.357.01000100.16410-0.813102.609401.72440K562ATP5C1
ABCA11PENSG00000251595.331.8518096.33390-1.596704.962403.48720K562CNOT7
ABCA11PENSG00000251595.390.4467041.868101.111103.673002.73110K562EIF4A3
ABCA11PENSG00000251595.3117.3112040.834401.522404.545103.79920K562HNRNPC
ABCA11PENSG00000251595.318.9926062.99430-1.729804.541602.92490K562HNRNPK
ABCA11PENSG00000251595.347.46340101.31800-1.094003.609602.65110K562KIF1C
ABCA11PENSG00000251595.358.36470113.50110-0.959503.906502.79540K562MBNL1
ABCA11PENSG00000251595.332.7238079.55560-1.281603.123902.17740K562NAA15
ABCA11PENSG00000251595.345.8539092.54810-1.013202.788901.54830K562PABPC1
ABCA11PENSG00000251595.393.17930169.23040-0.860903.336702.44170K562PUF60
ABCA11PENSG00000251595.314.0436094.68590-2.7532010.008209.02240K562PUS1
ABCA11PENSG00000251595.338.0629092.24890-1.277104.317303.59310K562RBM15
ABCA11PENSG00000251595.3125.1187064.982600.945103.792202.48920K562NELFE
ABCA11PENSG00000251595.3120.1698063.152700.928103.414702.63450K562SRSF1
ABCA11PENSG00000251595.3101.6482063.905500.669501.906501.31190K562TARDBP
ABCA11PENSG00000251595.344.3335095.99160-1.114502.634101.38040K562UTP18
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for ABCA11P is not available on ENCORE database.





3 RBPs can affect the splicing of ABCA11P :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SEABCA11PENSG00000251595.3chr4-4381314382214312344313004663634664900.295000.006540.06561includedHepG2U2AF2
A3SSABCA11PENSG00000251595.3chr4-4663634665324663634664904677694678400.128000.000000.00000longerK562AQR
A3SSABCA11PENSG00000251595.3chr4-4196034209084196034207624295584296680.526000.000240.07127longerHepG2PCBP2

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for ABCA11P is not avaliable on ENCORE database.