ZDHHC3

General Information

Gene Name       : ZDHHC3
Gene ID             : ENSG00000163812.13
Essential Gene : No

Functions

Localization

Domains (AlphaFold: ZDHHC3)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878ZDHHC3ENSG00000163812.1325.4232.5528.98ENCSR000AEF
HepG2ZDHHC3ENSG00000163812.1341.8433.2237.53ENCSR985KAT
K562ZDHHC3ENSG00000163812.1371.0467.5469.29ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for ZDHHC3 is not avaliable on ENCORE database.



Proteins bound to RNA
  • ZDHHC3 RNA is bound by 12 proteins.  







eCLIP assay for ZDHHC3 is not avaliable on ENCORE database.





12 proteins are bound to ZDHHC3 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr34496670744966861-3'-UTR,intron-Distal3.329076.38942K562FAM120A
chr34498668344986762-3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal4.252894.07810K562UPF1
chr34496818244968272-3'-UTR,CDS,intron-Distal4.573355.14756K562RBM15
chr34497533244975424-3'-UTR,CDS,intron-Distal,intron-Proximal5.025964.35676HepG2PRPF8
chr34497463744974693-3'-UTR,CDS,intron-Distal,intron-Proximal4.2686017.76792K562PUM2
chr34497533444975383-3'-UTR,CDS,intron-Distal,intron-Proximal3.184883.18246K562PRPF8
chr34498662044986684-3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal4.580484.02817HepG2PRPF8
chr34496810444968232-3'-UTR,CDS,intron-Distal,intron-Proximal3.130505.09613K562IGF2BP2
chr34501749045017575-5'-UTR,intron-Distal4.7510511.73310HepG2DDX3X
chr34501742845017490-5'-UTR,intron-Distal4.508958.20930HepG2DDX3X
chr34501757545017646-5'-UTR,intron-Distal4.8739811.72256HepG2DDX3X
chr34501748145017654-5'-UTR,intron-Distal5.221968.39621K562DDX3X
chr34500069445000738-CDS,intron-Distal3.9840511.47083K562YBX3
chr34500062345000682-CDS,intron-Distal3.910146.82724K562YBX3
chr34500062245000828-CDS,intron-Distal,intron-Proximal5.129447.65871K562METAP2
chr34497080644970888-CDS,intron-Distal,intron-Proximal3.920913.86978K562YBX3
chr34496225244962344-intron-Distal4.000873.65589K562SAFB2
chr34495979344959915-intron-Distal4.510583.71802K562RBFOX2
chr34496008544960246-intron-Distal3.388904.24143HepG2RBFOX2
chr34496005044960198-intron-Distal4.079778.41580K562RBFOX2
chr34496890444969039-intron-Distal3.979425.81617HepG2QKI
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for ZDHHC3 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for ZDHHC3 is not available on ENCORE database.

  • 50 RBPs can affect the levels of ZDHHC3.  








The Knockdown/knockout RNA-Seq assay for ZDHHC3 is not available on ENCORE database.





50 RBPs can affect the gene expression of ZDHHC3 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
ZDHHC3ENSG00000163812.91093.362901432.02220-0.389302.924501.95450HepG2ABCF1
ZDHHC3ENSG00000163812.91157.41950964.014400.263702.719502.11680HepG2ACO1
ZDHHC3ENSG00000163812.91634.470101411.729300.211302.049401.44190HepG2AUH
ZDHHC3ENSG00000163812.91007.039801560.47290-0.631905.059503.72130HepG2CCAR1
ZDHHC3ENSG00000163812.9610.14900796.32760-0.384202.783902.10450HepG2DDX21
ZDHHC3ENSG00000163812.91001.851801343.23900-0.423003.075702.42090HepG2DDX3X
ZDHHC3ENSG00000163812.9685.49220828.29580-0.273002.591901.95690HepG2DNAJC2
ZDHHC3ENSG00000163812.9896.816101109.24010-0.306701.804201.31310HepG2EIF2S1
ZDHHC3ENSG00000163812.9816.607701255.49930-0.6205010.145608.73840HepG2EIF4G1
ZDHHC3ENSG00000163812.91965.079701620.880700.277703.459602.79880HepG2ETF1
ZDHHC3ENSG00000163812.91932.818501445.947400.418602.781602.00870HepG2FIP1L1
ZDHHC3ENSG00000163812.9657.94270848.97090-0.367802.815402.02190HepG2FUBP3
ZDHHC3ENSG00000163812.9942.660301161.97890-0.301801.934901.34530HepG2HNRNPK
ZDHHC3ENSG00000163812.9913.734901159.02500-0.343103.426802.68450HepG2HNRNPL
ZDHHC3ENSG00000163812.9879.193101170.02920-0.412303.899202.94340HepG2MSI2
ZDHHC3ENSG00000163812.9751.727401273.54500-0.760607.983206.93390HepG2NCBP2
ZDHHC3ENSG00000163812.9907.367101234.31240-0.443903.715002.85080HepG2NSUN2
ZDHHC3ENSG00000163812.9511.98680699.48930-0.450202.853502.03190HepG2PRPF8
ZDHHC3ENSG00000163812.9981.406101215.04330-0.308103.168202.59030HepG2PTBP1
ZDHHC3ENSG00000163812.91030.923101277.72430-0.309602.439401.81030HepG2PUM2
ZDHHC3ENSG00000163812.9935.366601316.07440-0.492606.039005.16590HepG2QKI
ZDHHC3ENSG00000163812.9982.899901259.36280-0.357603.861503.14980HepG2RECQL
ZDHHC3ENSG00000163812.9845.26130650.496400.377802.850202.22760HepG2RPS19
ZDHHC3ENSG00000163812.9949.692101533.15040-0.691004.797003.75490HepG2SNRNP70
ZDHHC3ENSG00000163812.91911.758701530.131300.321104.787204.18000HepG2SRFBP1
ZDHHC3ENSG00000163812.91088.191401320.48540-0.279102.671202.20460HepG2SRSF1
ZDHHC3ENSG00000163812.9711.81650902.75300-0.342801.880701.30880HepG2SUPV3L1
ZDHHC3ENSG00000163812.9920.937101186.75840-0.365904.044803.38700HepG2TAF15
ZDHHC3ENSG00000163812.9877.589601137.95420-0.374805.000204.14210HepG2ZC3H8
ZDHHC3ENSG00000163812.92272.127903718.19770-0.7106011.477209.10750K562ABCF1
ZDHHC3ENSG00000163812.91408.000101785.40050-0.342603.171302.47130K562AKAP8L
ZDHHC3ENSG00000163812.92927.966102195.463600.415303.209802.58650K562AQR
ZDHHC3ENSG00000163812.91561.136101873.23270-0.262902.897301.96420K562ATP5C1
ZDHHC3ENSG00000163812.91737.742502212.83060-0.348702.799801.92150K562BOP1
ZDHHC3ENSG00000163812.91668.521302352.84170-0.495807.185105.91370K562CPSF6
ZDHHC3ENSG00000163812.91166.37940934.199100.320103.217502.36190K562EIF3G
ZDHHC3ENSG00000163812.91210.53660906.918100.416503.629402.69250K562EIF4A3
ZDHHC3ENSG00000163812.91633.307902029.17710-0.313102.167701.36350K562FTO
ZDHHC3ENSG00000163812.91838.59050943.151700.9629026.7647025.00690K562FXR1
ZDHHC3ENSG00000163812.91881.293402246.35920-0.255901.986901.31070K562GPKOW
ZDHHC3ENSG00000163812.91930.558001447.636500.415204.620303.86780K562HNRNPC
ZDHHC3ENSG00000163812.91473.785001169.460000.333603.031102.15130K562MAGOH
ZDHHC3ENSG00000163812.91882.728302135.11110-0.181502.473101.76320K562NSUN2
ZDHHC3ENSG00000163812.92073.536301752.073300.242902.158001.45130K562POLR2G
ZDHHC3ENSG00000163812.91442.800901136.220900.344503.264602.54900K562PTBP1
ZDHHC3ENSG00000163812.93716.768103170.520000.229202.083801.37540K562PUF60
ZDHHC3ENSG00000163812.91243.96330924.456100.428202.930901.89760K562RPS3
ZDHHC3ENSG00000163812.92364.943701561.204100.599005.589004.05090K562SAFB
ZDHHC3ENSG00000163812.92099.365701614.075200.379103.115801.57920K562SDAD1
ZDHHC3ENSG00000163812.92772.961003506.78600-0.338703.098901.64990K562SSRP1
ZDHHC3ENSG00000163812.92553.216601757.403600.538808.810307.34310K562SYNCRIP
ZDHHC3ENSG00000163812.91614.254901248.409600.370702.727101.79800K562TIAL1
ZDHHC3ENSG00000163812.92439.332503126.79180-0.358203.192001.67830K562TRIP6
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for ZDHHC3 is not available on ENCORE database.





8 RBPs can affect the splicing of ZDHHC3 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SEZDHHC3ENSG00000163812.9chr3-449743984497448244970797449709284497460944974691-0.066000.006460.09243excludedHepG2U2AF1
SEZDHHC3ENSG00000163812.9chr3-449743984497448244970797449709284497460944974941-0.133000.000320.06876excludedHepG2DKC1
SEZDHHC3ENSG00000163812.9chr3-449743984497448244970797449709284497460944974691-0.181000.005850.05997excludedHepG2U2AF2
SEZDHHC3ENSG00000163812.9chr3-4500007945000285449866594498678445000622450009520.064000.000000.00003includedK562AQR
SEZDHHC3ENSG00000163812.9chr3-4497439844974482449707974497092844974609449746910.104000.006900.06057includedK562AQR
SEZDHHC3ENSG00000163812.9chr3-4497439844974482449707974497092844974609449746910.136000.000530.07664includedHepG2TIA1
SEZDHHC3ENSG00000163812.9chr3-4497439844974482449707974497092844974609449746910.110000.001720.07784includedHepG2PTBP1
SEZDHHC3ENSG00000163812.9chr3-449743984497448244970797449709284497460944974691-0.160000.000020.00618excludedHepG2HNRNPA1
SEZDHHC3ENSG00000163812.9chr3-449743984497448244970797449709284497460944974691-0.139000.000080.01508excludedHepG2SSB
A3SSZDHHC3ENSG00000163812.9chr3-4497439844974515449743984497448244974609449746910.102000.017930.08688longerK562AQR
MXEZDHHC3ENSG00000163812.9chr3-4497079744970928449743984497448244966337449683394497460944974691-0.114000.000100.014112includedHepG2SSB

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for ZDHHC3 is not avaliable on ENCORE database.