VPS37D

General Information

Gene Name       : VPS37D
Gene ID             : ENSG00000176428.5
Essential Gene : No

Functions

Localization

Domains (AlphaFold: VPS37D)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878VPS37DENSG00000176428.50.000.010.01ENCSR000AEF
HepG2VPS37DENSG00000176428.52.070.781.42ENCSR985KAT
K562VPS37DENSG00000176428.50.280.280.28ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for VPS37D is not avaliable on ENCORE database.



Proteins bound to RNA
  • VPS37D RNA is bound by 6 proteins.  







eCLIP assay for VPS37D is not avaliable on ENCORE database.





6 proteins are bound to VPS37D RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr77308593973086007+3'-UTR3.656574.14074K562UPF1
chr77308575173085854+3'-UTR4.098535.40760HepG2UPF1
chr77308631973086385+3'-UTR4.545374.07810K562UPF1
chr77308617273086234+3'-UTR4.675086.26288K562YBX3
chr77308591973085983+3'-UTR4.264334.78280HepG2AKAP1
chr77308240673082495+CDS,intron-Proximal3.886683.70701HepG2PRPF4
chr77308390573083997+CDS,intron-Distal,intron-Proximal4.507525.25202HepG2AQR
chr77308561173085680+CDS3.288264.00430HepG2UPF1
chr77308435573084430+CDS,intron-Distal4.223453.79199HepG2PPIG
chr77308431073084422+CDS,intron-Distal,intron-Proximal5.118606.22530K562AQR
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for VPS37D is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for VPS37D is not available on ENCORE database.

  • 68 RBPs can affect the levels of VPS37D.  








The Knockdown/knockout RNA-Seq assay for VPS37D is not available on ENCORE database.





68 RBPs can affect the gene expression of VPS37D :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
VPS37DENSG00000176428.533.8664087.91170-1.376204.184301.32360HepG2AGGF1
VPS37DENSG00000176428.557.67080235.21160-2.0280014.6827013.55610HepG2AKAP1
VPS37DENSG00000176428.5137.3484090.253200.605702.114001.49930HepG2AUH
VPS37DENSG00000176428.5119.9816029.878502.005507.266305.89100HepG2BCLAF1
VPS37DENSG00000176428.5157.86400225.28210-0.513101.906401.37740HepG2DDX3X
VPS37DENSG00000176428.5122.2623071.134600.781302.658401.66430HepG2DDX5
VPS37DENSG00000176428.597.71370193.59930-0.986404.513103.74080HepG2DDX6
VPS37DENSG00000176428.5267.07400105.749801.3365011.9472010.74470HepG2DKC1
VPS37DENSG00000176428.559.2819026.978301.135703.016802.34090HepG2DNAJC2
VPS37DENSG00000176428.5114.58360200.20590-0.805102.968302.25710HepG2EIF4B
VPS37DENSG00000176428.5183.9939056.776701.6962011.282809.70480HepG2EIF4G2
VPS37DENSG00000176428.5157.53920103.630600.604202.266001.71340HepG2ETF1
VPS37DENSG00000176428.592.95250194.75410-1.067105.928404.79850HepG2FUBP3
VPS37DENSG00000176428.5126.03530207.50710-0.719303.071302.34250HepG2FXR1
VPS37DENSG00000176428.5137.7497032.175202.0979010.555909.36270HepG2GPKOW
VPS37DENSG00000176428.576.3504027.471901.474602.953202.28740HepG2HNRNPA1
VPS37DENSG00000176428.578.4701030.559801.360403.040702.31860HepG2HNRNPC
VPS37DENSG00000176428.577.4818029.778401.379503.437701.73210HepG2HNRNPD
VPS37DENSG00000176428.594.67870194.99500-1.042305.200804.26660HepG2HNRNPK
VPS37DENSG00000176428.5314.9600030.706003.3585033.8346032.02780HepG2HNRNPLL
VPS37DENSG00000176428.564.5337030.357601.087902.948102.32420HepG2HNRNPU
VPS37DENSG00000176428.597.9325025.465101.943205.059104.10830HepG2IGF2BP1
VPS37DENSG00000176428.5563.09020195.584101.5255019.3390017.73570HepG2IGF2BP2
VPS37DENSG00000176428.595.4241033.527101.508902.687101.39190HepG2ILF3
VPS37DENSG00000176428.5350.07300207.580100.753904.537003.70210HepG2MAGOH
VPS37DENSG00000176428.593.2102027.231501.775106.177505.08660HepG2NSUN2
VPS37DENSG00000176428.594.5611031.451001.588004.112003.01440HepG2PABPC1
VPS37DENSG00000176428.591.7028027.076101.759807.762306.57760HepG2PPIL4
VPS37DENSG00000176428.587.6334039.109201.163904.171203.24210HepG2PRPF4
VPS37DENSG00000176428.5270.9840056.871602.2523024.1166022.59410HepG2PUF60
VPS37DENSG00000176428.5458.72330112.590502.0264012.4759011.33020HepG2PUS1
VPS37DENSG00000176428.586.3663035.775601.271402.790901.72620HepG2RCC2
VPS37DENSG00000176428.596.03110189.38820-0.979805.381504.66720HepG2NELFE
VPS37DENSG00000176428.5100.84760176.36480-0.806403.941803.22310HepG2RECQL
VPS37DENSG00000176428.571.2309027.867101.353802.002301.41040HepG2RPLP0
VPS37DENSG00000176428.591.1520034.493501.401804.665303.45050HepG2RPS10
VPS37DENSG00000176428.5134.7286034.628001.959909.505808.05300HepG2RPS3A
VPS37DENSG00000176428.554.4547027.033301.010202.210601.62370HepG2SAFB2
VPS37DENSG00000176428.5116.73140177.19050-0.602102.514301.94650HepG2SF3B4
VPS37DENSG00000176428.5155.0833054.522101.508009.053307.89870HepG2SLBP
VPS37DENSG00000176428.543.31590184.93660-2.0941015.9410015.00510HepG2SRSF1
VPS37DENSG00000176428.5120.8428056.147201.105704.706103.92630HepG2SRSF5
VPS37DENSG00000176428.574.8428025.409501.558405.169004.26520HepG2SRSF7
VPS37DENSG00000176428.557.57720150.44550-1.385707.920407.07170HepG2SRSF9
VPS37DENSG00000176428.5341.3504084.930102.0068029.4290028.16100HepG2SSB
VPS37DENSG00000176428.585.7750030.162601.507703.344702.12090HepG2STIP1
VPS37DENSG00000176428.5138.0372033.670902.035407.512506.48690HepG2SUPV3L1
VPS37DENSG00000176428.568.98870166.19510-1.268407.466106.62020HepG2TAF15
VPS37DENSG00000176428.5122.5271029.488802.0548011.3796010.48670HepG2TIAL1
VPS37DENSG00000176428.587.3855029.762401.553806.196605.41330HepG2TRIM56
VPS37DENSG00000176428.5241.85770137.179600.818005.694604.74950HepG2UPF1
VPS37DENSG00000176428.5118.4400030.792901.943405.446504.00910HepG2UPF2
VPS37DENSG00000176428.5155.7102031.022902.327409.858107.82330HepG2XPO5
VPS37DENSG00000176428.5159.4555033.145702.2662010.471609.08010HepG2XRN2
VPS37DENSG00000176428.5130.2993027.991902.2186013.3503012.20450K562AGGF1
VPS37DENSG00000176428.576.9553030.758501.322904.252402.97940K562AKAP8
VPS37DENSG00000176428.584.7647029.126701.541003.051202.36440K562AKAP8L
VPS37DENSG00000176428.563.5383030.560801.055802.659601.76450K562ATP5C1
VPS37DENSG00000176428.517.217603.000602.520502.231801.52050K562CPSF6
VPS37DENSG00000176428.527.616806.000402.202302.915001.83010K562CSTF2
VPS37DENSG00000176428.537.8284011.555601.710802.410901.70300K562GRSF1
VPS37DENSG00000176428.568.8679030.911001.155602.819401.98520K562KIF1C
VPS37DENSG00000176428.571.4794029.589201.272402.849501.75480K562MAK16
VPS37DENSG00000176428.581.3487034.628101.232103.739002.65530K562MBNL1
VPS37DENSG00000176428.557.6920021.374301.432402.566101.62220K562PABPN1
VPS37DENSG00000176428.526.699005.587902.256303.387302.46400K562PPIG
VPS37DENSG00000176428.576.6219028.886401.407303.931903.30080K562PUS1
VPS37DENSG00000176428.5124.0515028.144902.1399012.2040010.96290K562RBM15
VPS37DENSG00000176428.534.723407.623802.187203.248302.36220K562RPS19
VPS37DENSG00000176428.585.9402029.287101.553004.362502.60480K562UTP18
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for VPS37D is not available on ENCORE database.






No RBPs affect the alternative splcing events of VPS37D on ENCORE database.





The Knockdown/knockout RNA-Seq assay for VPS37D is not avaliable on ENCORE database.