UBBP4

General Information

Gene Name       : UBBP4
Gene ID             : ENSG00000263563.6
Essential Gene : No

Functions

Localization

Domains (AlphaFold: UBBP4)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878UBBP4ENSG00000263563.60.340.170.26ENCSR000AEF
HepG2UBBP4ENSG00000263563.61.080.530.81ENCSR985KAT
K562UBBP4ENSG00000263563.6194.17204.72199.44ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for UBBP4 is not avaliable on ENCORE database.



Proteins bound to RNA
  • UBBP4 RNA is bound by 11 proteins.  







eCLIP assay for UBBP4 is not avaliable on ENCORE database.





11 proteins are bound to UBBP4 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr172173125021731332+3'-UTR,CDS,intron-Distal,intron-Proximal3.7190415.61764K562ZNF622
chr172173118021731203+3'-UTR,CDS,intron-Distal,intron-Proximal4.486333.81597K562RBM15
chr172173107021731090+3'-UTR,CDS,intron-Proximal3.489535.65349K562UCHL5
chr172173139921731454+3'-UTR,CDS,intron-Distal,intron-Proximal3.282185.76198K562RBM15
chr172173116521731202+3'-UTR,CDS,intron-Distal3.514454.72530HepG2G3BP1
chr172173107421731096+3'-UTR,CDS,intron-Proximal4.514126.26929K562YBX3
chr172173142921731452+3'-UTR,CDS,intron-Proximal4.337634.54659HepG2G3BP1
chr172173112521731159+3'-UTR,CDS,intron-Proximal3.677998.62113K562YBX3
chr172173161921731697+3'-UTR3.460417.37538K562UPF1
chr172173125721731299+3'-UTR,CDS,intron-Distal,intron-Proximal3.309177.25129K562UCHL5
chr172173138321731427+3'-UTR,intron-Distal,intron-Proximal3.1015110.43105K562YBX3
chr172173127821731295+3'-UTR,CDS,intron-Distal,intron-Proximal3.050096.17212K562YBX3
chr172173103621731070+3'-UTR,CDS,intron-Proximal4.4781715.20336K562UCHL5
chr172173104121731074+3'-UTR,CDS,intron-Proximal3.417319.89088K562YBX3
chr172173125121731318+3'-UTR,CDS,intron-Distal,intron-Proximal3.682845.81849K562GRWD1
chr172173146621731516+3'-UTR,CDS,intron-Proximal3.055938.13521K562UCHL5
chr172173124121731300+3'-UTR,CDS,intron-Distal,intron-Proximal3.015033.71087K562METAP2
chr172173137921731423+3'-UTR,intron-Distal,intron-Proximal3.211178.60702K562UCHL5
chr172173103221731068+3'-UTR,CDS,intron-Proximal3.511643.49838K562SND1
chr172173104221731087+3'-UTR,CDS,intron-Proximal3.030204.45146K562GRWD1
chr172173165621731703+3'-UTR5.2785518.11896K562PABPC4
chr172173118521731202+3'-UTR,CDS,intron-Distal3.164635.48666K562METAP2
chr172172975021729847+5'-UTR3.195233.14365K562NONO
chr172173078021730846+CDS,intron-Proximal3.801236.39924K562GRWD1
chr172173078921730851+CDS,intron-Distal,intron-Proximal3.264318.39218K562UCHL5
chr172173070821730774+CDS,intron-Proximal3.7264011.41791K562UCHL5
chr172173078421730838+CDS,intron-Proximal3.271976.38612K562YBX3
chr172173082721730870+CDS,intron-Distal,intron-Proximal3.551155.89284K562RBM15
chr172173013921730197+intron-Distal3.913133.30664K562NONO
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for UBBP4 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for UBBP4 is not available on ENCORE database.

  • 56 RBPs can affect the levels of UBBP4.  








The Knockdown/knockout RNA-Seq assay for UBBP4 is not available on ENCORE database.





56 RBPs can affect the gene expression of UBBP4 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
UBBP4ENSG00000263563.15501.218103165.785300.7971034.3523032.42380K562AGGF1
UBBP4ENSG00000263563.14720.813703478.694700.440405.494603.99680K562AKAP8
UBBP4ENSG00000263563.14085.216803294.137000.310402.967002.28970K562AKAP8L
UBBP4ENSG00000263563.13497.320402801.878700.319802.665202.08680K562AQR
UBBP4ENSG00000263563.11025.538501305.24470-0.347902.446101.46520K562CCAR1
UBBP4ENSG00000263563.12041.996002566.83470-0.330005.089804.24420K562DDX47
UBBP4ENSG00000263563.11099.904801461.14520-0.409703.353001.87440K562DHX30
UBBP4ENSG00000263563.14542.300403544.765600.357606.179004.78620K562DKC1
UBBP4ENSG00000263563.1982.461301403.60990-0.514705.276903.41580K562DNAJC21
UBBP4ENSG00000263563.11559.290202156.16220-0.467607.980706.85470K562EIF2S2
UBBP4ENSG00000263563.1522.101801327.68970-1.3465014.4245012.15990K562EIF3A
UBBP4ENSG00000263563.12794.500101817.383000.620609.239307.73800K562EIF4A3
UBBP4ENSG00000263563.11967.365101636.668000.265402.732001.58950K562EIF4B
UBBP4ENSG00000263563.12362.601403548.92150-0.5870014.4080012.37450K562EIF4G2
UBBP4ENSG00000263563.1596.403801029.05560-0.787008.549406.84470K562FTO
UBBP4ENSG00000263563.12205.177301714.531300.363004.584602.23350K562FUBP3
UBBP4ENSG00000263563.11342.191601073.204200.322603.045101.62880K562FUS
UBBP4ENSG00000263563.11476.210301890.00470-0.356504.680203.92150K562FXR1
UBBP4ENSG00000263563.12510.314901829.585700.456305.553903.43900K562G3BP1
UBBP4ENSG00000263563.11079.826701595.28720-0.563002.720502.02050K562G3BP2
UBBP4ENSG00000263563.12645.870902235.728900.242901.973801.45820K562HNRNPC
UBBP4ENSG00000263563.11461.649701996.96660-0.450204.807303.25220K562HNRNPF
UBBP4ENSG00000263563.12872.503702319.772800.308203.043601.92970K562HNRNPL
UBBP4ENSG00000263563.11787.871401339.663100.416303.158302.15810K562HNRNPM
UBBP4ENSG00000263563.12446.042702917.63700-0.254402.783401.88640K562HNRNPU
UBBP4ENSG00000263563.12598.610701914.287400.440803.335502.17170K562IGF2BP2
UBBP4ENSG00000263563.1917.742601363.61310-0.571305.448403.35790K562ILF3
UBBP4ENSG00000263563.1795.661901317.98710-0.728107.233804.87120K562KHDRBS1
UBBP4ENSG00000263563.14449.953103495.924000.348004.322803.26070K562KIF1C
UBBP4ENSG00000263563.14664.405003346.442200.479006.560104.61200K562MAK16
UBBP4ENSG00000263563.13928.022102745.051300.516904.160803.01870K562NAA15
UBBP4ENSG00000263563.12234.111801814.743100.299803.099301.79910K562NCBP2
UBBP4ENSG00000263563.12563.580002291.643200.161702.247801.56880K562NSUN2
UBBP4ENSG00000263563.13822.848102416.617700.661603.383702.25550K562PABPN1
UBBP4ENSG00000263563.12522.289701966.225400.359204.086602.42600K562PCBP1
UBBP4ENSG00000263563.11425.333201804.74220-0.340503.514202.60450K562POLR2G
UBBP4ENSG00000263563.12554.120501848.947100.466005.073703.90600K562PPIG
UBBP4ENSG00000263563.11075.197201689.45500-0.652008.054106.76870K562PRPF8
UBBP4ENSG00000263563.13147.388304118.74350-0.388006.049504.41590K562PUM1
UBBP4ENSG00000263563.13240.639204035.41650-0.316404.806303.52860K562PUM2
UBBP4ENSG00000263563.16290.746503266.923900.945204.829904.13780K562PUS1
UBBP4ENSG00000263563.14963.314203183.088800.6408016.3106014.85600K562RBM15
UBBP4ENSG00000263563.11483.066001195.627000.310704.159002.22700K562RPS10
UBBP4ENSG00000263563.11097.926001720.59120-0.648106.713105.42960K562RPS19
UBBP4ENSG00000263563.11375.117101974.62500-0.522005.290003.84380K562RPS3
UBBP4ENSG00000263563.13512.610202210.568200.668002.681301.50400K562SF1
UBBP4ENSG00000263563.1761.873601083.45910-0.508003.649402.52350K562SF3B1
UBBP4ENSG00000263563.13989.207702537.909800.652402.936901.65870K562SNRNP200
UBBP4ENSG00000263563.11159.054701915.66790-0.7249012.5204011.01410K562SRSF1
UBBP4ENSG00000263563.11514.131301906.01820-0.332103.102701.97190K562SRSF4
UBBP4ENSG00000263563.11796.039301252.163100.520308.983906.59610K562SSB
UBBP4ENSG00000263563.11302.083602323.73230-0.835603.366801.55060K562STIP1
UBBP4ENSG00000263563.12585.104201938.616700.415103.945403.09340K562TARDBP
UBBP4ENSG00000263563.11041.538901545.11530-0.569005.038603.47460K562U2AF1
UBBP4ENSG00000263563.13760.556402796.443600.427304.683602.50950K562UPF2
UBBP4ENSG00000263563.15015.018503312.276000.598302.998401.63290K562UTP18
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for UBBP4 is not available on ENCORE database.






No RBPs affect the alternative splcing events of UBBP4 on ENCORE database.





The Knockdown/knockout RNA-Seq assay for UBBP4 is not avaliable on ENCORE database.