TTC9C

General Information

Gene Name       : TTC9C
Gene ID             : ENSG00000162222.13
Essential Gene : No

Functions

Localization

Domains (AlphaFold: TTC9C)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878TTC9CENSG00000162222.1333.8142.1637.98ENCSR000AEF
HepG2TTC9CENSG00000162222.1325.8433.2429.54ENCSR985KAT
K562TTC9CENSG00000162222.1337.0232.8034.91ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for TTC9C is not avaliable on ENCORE database.



Proteins bound to RNA
  • TTC9C RNA is bound by 7 proteins.  







eCLIP assay for TTC9C is not avaliable on ENCORE database.





7 proteins are bound to TTC9C RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr116250283762502914+3'-UTR,CDS,intron-Proximal4.859095.51162HepG2U2AF2
chr116250303262503095+3'-UTR,CDS,intron-Proximal5.066316.75320K562AQR
chr116250285462502941+3'-UTR,CDS3.835343.12746HepG2GRWD1
chr116249646062496513+CDS4.118858.68374K562YBX3
chr116249640862496551+CDS3.513735.10069HepG2GRWD1
chr116250640762506453+intron-Distal4.257173.87930K562UPF1
chr116250696362507064+intron-Distal3.927317.46127HepG2ILF3
chr116250646762506521+intron-Distal3.732576.04024K562UPF1
chr116250698462507059+intron-Distal3.942485.99105K562UPF1
chr116250696362507028+intron-Distal3.704165.70839K562AKAP1
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for TTC9C is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for TTC9C is not available on ENCORE database.

  • 54 RBPs can affect the levels of TTC9C.  








The Knockdown/knockout RNA-Seq assay for TTC9C is not available on ENCORE database.





54 RBPs can affect the gene expression of TTC9C :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
TTC9CENSG00000162222.9173.59960247.30450-0.510502.241201.54210HepG2CALR
TTC9CENSG00000162222.9207.12560324.57980-0.648102.697001.94260HepG2CNOT7
TTC9CENSG00000162222.9341.28410447.24250-0.390102.905702.14830HepG2DAZAP1
TTC9CENSG00000162222.9172.83600280.16490-0.696904.493203.66770HepG2DKC1
TTC9CENSG00000162222.9239.87060380.18600-0.664402.108701.54810HepG2EIF4A3
TTC9CENSG00000162222.9358.25900473.48310-0.402302.928402.31310HepG2ETF1
TTC9CENSG00000162222.9184.21080286.18240-0.635603.716902.74960HepG2EWSR1
TTC9CENSG00000162222.9215.22820355.75320-0.725002.472001.84100HepG2G3BP1
TTC9CENSG00000162222.9195.51130330.12140-0.755704.652103.76840HepG2HNRNPC
TTC9CENSG00000162222.9256.32060334.97920-0.386102.362701.67770HepG2ILF2
TTC9CENSG00000162222.9229.62790363.68930-0.663402.185801.30700HepG2KHSRP
TTC9CENSG00000162222.9317.24270461.95260-0.542202.746801.91970HepG2LARP4
TTC9CENSG00000162222.9206.09280302.20230-0.552202.462501.32370HepG2LIN28B
TTC9CENSG00000162222.9242.41390383.51460-0.661802.290001.69120HepG2MAGOH
TTC9CENSG00000162222.9233.48190385.69520-0.724202.594201.98200HepG2MATR3
TTC9CENSG00000162222.9171.04700260.16830-0.605102.800101.37310HepG2NIP7
TTC9CENSG00000162222.9308.77080443.48270-0.522303.997203.08110HepG2NOL12
TTC9CENSG00000162222.9213.77050351.73020-0.718402.446801.76450HepG2PABPC4
TTC9CENSG00000162222.9286.69210386.00720-0.429102.904102.28610HepG2PCBP1
TTC9CENSG00000162222.9253.24680423.33250-0.741205.925005.09710HepG2PUF60
TTC9CENSG00000162222.9333.15910449.37380-0.431703.515302.86250HepG2PUM1
TTC9CENSG00000162222.9326.39730449.05320-0.460303.055202.35000HepG2PUM2
TTC9CENSG00000162222.9257.59710425.40920-0.723706.145505.26610HepG2QKI
TTC9CENSG00000162222.9292.70780395.73420-0.435102.691002.17770HepG2RBM22
TTC9CENSG00000162222.9242.69000386.06910-0.669704.875104.00210HepG2RBM25
TTC9CENSG00000162222.9211.81820346.92300-0.711803.745202.58060HepG2RBM27
TTC9CENSG00000162222.9295.96660437.11680-0.562604.416403.76150HepG2NELFE
TTC9CENSG00000162222.9319.40740407.08280-0.349902.069401.52620HepG2RECQL
TTC9CENSG00000162222.9198.46380319.97790-0.689103.567102.66060HepG2RPS2
TTC9CENSG00000162222.9197.03850326.00440-0.726403.743902.81310HepG2RPS3A
TTC9CENSG00000162222.9183.71710326.60330-0.830104.943603.49230HepG2RPS5
TTC9CENSG00000162222.9217.15010292.04540-0.427502.337501.73740HepG2SAFB2
TTC9CENSG00000162222.9280.68510408.94730-0.543004.062903.36850HepG2SF3B4
TTC9CENSG00000162222.9264.92000405.88450-0.615505.477204.54740HepG2SLBP
TTC9CENSG00000162222.9260.98630340.57620-0.384002.265001.67340HepG2SMN1
TTC9CENSG00000162222.9327.41130426.83680-0.382602.372501.92550HepG2SRSF1
TTC9CENSG00000162222.9153.67770238.26570-0.632702.301401.39820HepG2SRSF3
TTC9CENSG00000162222.9312.43480417.96430-0.419802.937002.29270HepG2SRSF5
TTC9CENSG00000162222.9249.23430347.24110-0.478403.298202.70630HepG2SRSF9
TTC9CENSG00000162222.9250.77280383.61440-0.613304.698603.99890HepG2TAF15
TTC9CENSG00000162222.9215.31360318.66150-0.565603.466802.92040HepG2TIAL1
TTC9CENSG00000162222.9235.97790321.50210-0.446202.718002.15710HepG2TRIM56
TTC9CENSG00000162222.9281.79700413.55770-0.553403.661202.64000HepG2TUFM
TTC9CENSG00000162222.9194.20650258.45100-0.412301.953601.43210HepG2UTP3
TTC9CENSG00000162222.9189.11170294.41570-0.638604.682304.01870HepG2ZNF622
TTC9CENSG00000162222.91122.39630533.451601.0731016.2669015.00370K562AQR
TTC9CENSG00000162222.9718.30860552.156600.379403.493302.77310K562DDX47
TTC9CENSG00000162222.9215.85130310.11760-0.522802.229101.60440K562G3BP2
TTC9CENSG00000162222.9283.09370387.47110-0.452802.820901.66960K562GLRX3
TTC9CENSG00000162222.9616.76140405.147700.606204.794303.75470K562HSPD1
TTC9CENSG00000162222.9465.68760339.277500.456802.790501.96490K562PPIG
TTC9CENSG00000162222.9513.83240296.706800.792205.649804.47750K562RPS19
TTC9CENSG00000162222.9570.08790446.650000.351902.510401.73080K562SF3A3
TTC9CENSG00000162222.9269.41430385.17450-0.515702.965302.23310K562TARDBP
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for TTC9C is not available on ENCORE database.





15 RBPs can affect the splicing of TTC9C :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SETTC9CENSG00000162222.9chr11+625005896250067162496294624965586250285362503715-0.083000.001410.02756excludedK562SRSF1
SETTC9CENSG00000162222.9chr11+625005896250067162496294624965586250285362503715-0.065000.002620.04532excludedHepG2U2AF1
SETTC9CENSG00000162222.9chr11+625005896250067162496294624965586250285362503715-0.124000.000000.00000excludedK562AKAP8L
SETTC9CENSG00000162222.9chr11+6250058962500671624962946249655862502853625037150.071000.000020.01202includedK562PUM1
SETTC9CENSG00000162222.9chr11+625005896250067162496294624965586250285362503715-0.062000.002640.03162excludedHepG2U2AF2
SETTC9CENSG00000162222.9chr11+6250058962500671624962946249655862502853625037150.118000.000170.01888includedK562SUPV3L1
SETTC9CENSG00000162222.9chr11+625005896250067162496294624965586250285362503715-0.112000.000000.00001excludedK562PUS1
SETTC9CENSG00000162222.9chr11+6250058962500671624962946249655862502853625037150.092000.000930.06231includedHepG2IGF2BP3
SETTC9CENSG00000162222.9chr11+6250058962500671624962946249655862502853625037150.084000.000000.00149includedK562PUM2
SETTC9CENSG00000162222.9chr11+6250058962500671624962946249655862502853625037150.101000.000000.00091includedK562EIF4G2
SETTC9CENSG00000162222.9chr11+625005896250067162496294624965586250285362503715-0.092000.000200.01016excludedK562UTP18
SETTC9CENSG00000162222.9chr11+6250058962500671624962946249655862502853625037150.098000.000030.01037includedK562UPF1
SETTC9CENSG00000162222.9chr11+625005896250067162496294624965586250285362503715-0.105000.000010.00034excludedK562RBM15
SETTC9CENSG00000162222.9chr11+625005896250067162496294624965586250285362503715-0.095000.000040.00196excludedK562AGGF1
SETTC9CENSG00000162222.9chr11+6250058962500671624962946249655862502853625037150.168000.000000.00010includedK562HNRNPC

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for TTC9C is not avaliable on ENCORE database.