TTC9C

General Information

Gene Name : TTC9C
Gene ID : ENSG00000162222.13
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: TTC9C)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	TTC9C	ENSG00000162222.13	33.81	42.16	37.98	ENCSR000AEF
HepG2	TTC9C	ENSG00000162222.13	25.84	33.24	29.54	ENCSR985KAT
K562	TTC9C	ENSG00000162222.13	37.02	32.80	34.91	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for TTC9C is not avaliable on ENCORE database.

Proteins bound to RNA

TTC9C RNA is bound by 7 proteins.

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eCLIP assay for TTC9C is not avaliable on ENCORE database.

7 proteins are bound to TTC9C RNA:

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Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr11	62496460	62496513	+	CDS	4.11885	8.68374	K562	YBX3
chr11	62506963	62507064	+	intron-Distal	3.92731	7.46127	HepG2	ILF3
chr11	62503032	62503095	+	3'-UTR,CDS,intron-Proximal	5.06631	6.75320	K562	AQR
chr11	62506467	62506521	+	intron-Distal	3.73257	6.04024	K562	UPF1
chr11	62506984	62507059	+	intron-Distal	3.94248	5.99105	K562	UPF1
chr11	62506963	62507028	+	intron-Distal	3.70416	5.70839	K562	AKAP1
chr11	62502837	62502914	+	3'-UTR,CDS,intron-Proximal	4.85909	5.51162	HepG2	U2AF2
chr11	62496408	62496551	+	CDS	3.51373	5.10069	HepG2	GRWD1
chr11	62506407	62506453	+	intron-Distal	4.25717	3.87930	K562	UPF1
chr11	62502854	62502941	+	3'-UTR,CDS	3.83534	3.12746	HepG2	GRWD1
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 10 entries

eCLIP assay for TTC9C is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for TTC9C is not available on ENCORE database.
54 RBPs can affect the levels of TTC9C.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for TTC9C is not available on ENCORE database.

54 RBPs can affect the gene expression of TTC9C :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
TTC9C	ENSG00000162222.9	1122.39630	533.45160	1.07310	16.26690	15.00370	K562	AQR
TTC9C	ENSG00000162222.9	257.59710	425.40920	-0.72370	6.14550	5.26610	HepG2	QKI
TTC9C	ENSG00000162222.9	253.24680	423.33250	-0.74120	5.92500	5.09710	HepG2	PUF60
TTC9C	ENSG00000162222.9	264.92000	405.88450	-0.61550	5.47720	4.54740	HepG2	SLBP
TTC9C	ENSG00000162222.9	513.83240	296.70680	0.79220	5.64980	4.47750	K562	RPS19
TTC9C	ENSG00000162222.9	189.11170	294.41570	-0.63860	4.68230	4.01870	HepG2	ZNF622
TTC9C	ENSG00000162222.9	242.69000	386.06910	-0.66970	4.87510	4.00210	HepG2	RBM25
TTC9C	ENSG00000162222.9	250.77280	383.61440	-0.61330	4.69860	3.99890	HepG2	TAF15
TTC9C	ENSG00000162222.9	195.51130	330.12140	-0.75570	4.65210	3.76840	HepG2	HNRNPC
TTC9C	ENSG00000162222.9	295.96660	437.11680	-0.56260	4.41640	3.76150	HepG2	NELFE
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 54 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for TTC9C is not available on ENCORE database.

15 RBPs can affect the splicing of TTC9C :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
SE	TTC9C	ENSG00000162222.9	chr11	+	62500589	62500671	62496294	62496558	62502853	62503715	-0.12400	0.00000	0.00000	excluded	K562	AKAP8L
SE	TTC9C	ENSG00000162222.9	chr11	+	62500589	62500671	62496294	62496558	62502853	62503715	-0.11200	0.00000	0.00001	excluded	K562	PUS1
SE	TTC9C	ENSG00000162222.9	chr11	+	62500589	62500671	62496294	62496558	62502853	62503715	0.08400	0.00000	0.00149	included	K562	PUM2
SE	TTC9C	ENSG00000162222.9	chr11	+	62500589	62500671	62496294	62496558	62502853	62503715	0.10100	0.00000	0.00091	included	K562	EIF4G2
SE	TTC9C	ENSG00000162222.9	chr11	+	62500589	62500671	62496294	62496558	62502853	62503715	0.16800	0.00000	0.00010	included	K562	HNRNPC
SE	TTC9C	ENSG00000162222.9	chr11	+	62500589	62500671	62496294	62496558	62502853	62503715	-0.10500	0.00001	0.00034	excluded	K562	RBM15
SE	TTC9C	ENSG00000162222.9	chr11	+	62500589	62500671	62496294	62496558	62502853	62503715	0.07100	0.00002	0.01202	included	K562	PUM1
SE	TTC9C	ENSG00000162222.9	chr11	+	62500589	62500671	62496294	62496558	62502853	62503715	0.09800	0.00003	0.01037	included	K562	UPF1
SE	TTC9C	ENSG00000162222.9	chr11	+	62500589	62500671	62496294	62496558	62502853	62503715	-0.09500	0.00004	0.00196	excluded	K562	AGGF1
SE	TTC9C	ENSG00000162222.9	chr11	+	62500589	62500671	62496294	62496558	62502853	62503715	0.11800	0.00017	0.01888	included	K562	SUPV3L1

Showing 1 to 10 of 15 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

TTC9C

General Information

Functions

Localization

Domains (AlphaFold: TTC9C)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for TTC9C is not avaliable on ENCORE database.

7 proteins are bound to TTC9C RNA:

eCLIP assay for TTC9C is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for TTC9C is not available on ENCORE database.

54 RBPs can affect the gene expression of TTC9C :

The Knockdown/knockout RNA-Seq assay for TTC9C is not available on ENCORE database.

15 RBPs can affect the splicing of TTC9C :

The Knockdown/knockout RNA-Seq assay for TTC9C is not avaliable on ENCORE database.