TMEM242

General Information

Gene Name       : TMEM242
Gene ID             : ENSG00000215712.10
Essential Gene : No

Functions

Localization

Domains (AlphaFold: TMEM242)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878TMEM242ENSG00000215712.101.502.291.90ENCSR000AEF
HepG2TMEM242ENSG00000215712.104.367.045.70ENCSR985KAT
K562TMEM242ENSG00000215712.107.757.687.71ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for TMEM242 is not avaliable on ENCORE database.



Proteins bound to RNA
  • TMEM242 RNA is bound by 18 proteins.  







eCLIP assay for TMEM242 is not avaliable on ENCORE database.





18 proteins are bound to TMEM242 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr6157713263157713323-3'-UTR,intron-Distal5.7266611.97438K562UPF1
chr6157713266157713312-3'-UTR,intron-Distal3.113843.52775K562FAM120A
chr6157713653157713756-3'-UTR,intron-Distal4.7131717.31691K562UPF1
chr6157713378157713446-3'-UTR,intron-Distal3.231336.00918K562FAM120A
chr6157713535157713593-3'-UTR,intron-Distal3.757709.74385K562UPF1
chr6157713729157713791-3'-UTR,intron-Distal3.871136.30427K562FAM120A
chr6157713722157713775-3'-UTR,intron-Distal3.852613.22972K562TARDBP
chr6157713381157713439-3'-UTR,intron-Distal3.510937.60286K562UPF1
chr6157713530157713590-3'-UTR,intron-Distal3.131345.59934K562FAM120A
chr6157713184157713247-3'-UTR,intron-Distal3.6901311.85767K562UPF1
chr6157713110157713165-3'-UTR,intron-Distal5.6638910.90122K562UPF1
chr6157739530157739639-3'-UTR,intron-Distal5.7588710.62660K562QKI
chr6157713439157713509-3'-UTR,intron-Distal4.628428.51603K562UPF1
chr6157713446157713495-3'-UTR,intron-Distal4.703085.38606K562FAM120A
chr6157744443157744553-5'-UTR,CDS,intron-Distal3.426094.32211K562DDX3X
chr6157744437157744445-CDS,intron-Distal5.0948912.70303K562AQR
chr6157743734157743770-CDS,intron-Distal,intron-Proximal4.054103.38968HepG2BCLAF1
chr6157743690157743783-CDS,intron-Distal,intron-Proximal5.162635.65342K562AQR
chr6157744364157744450-CDS,intron-Distal3.878394.93376K562PRPF8
chr6157744395157744529-CDS,intron-Distal4.308413.79199HepG2PPIG
chr6157735072157735116-intron-Distal5.0964411.35510HepG2XPO5
chr6157732240157732298-intron-Distal3.198933.62271HepG2SAFB
chr6157731575157731658-intron-Distal4.117997.67253K562TBRG4
chr6157731581157731658-intron-Distal4.124816.74265K562GTF2F1
chr6157744398157744437-intron-Distal6.8923422.99608K562AQR
chr6157735329157735388-intron-Distal3.0468321.76462K562DHX30
chr6157732245157732292-intron-Distal3.702483.33192K562SAFB
chr6157734641157734669-intron-Distal3.9666111.71070K562HNRNPL
chr6157736848157736912-intron-Distal3.587874.92145K562HNRNPL
chr6157734679157734755-intron-Distal4.4075815.96455K562HNRNPL
chr6157735008157735028-intron-Distal3.011865.44533K562HNRNPL
chr6157734571157734628-intron-Distal3.2641815.05372K562HNRNPL
chr6157734569157734646-intron-Distal3.347685.78018K562SAFB
chr6157734901157734946-intron-Distal4.026238.33000K562PHF6
chr6157731572157731669-intron-Distal3.255435.65759HepG2SAFB
chr6157732153157732177-intron-Distal3.025103.42428K562HNRNPL
chr6157731486157731547-intron-Distal4.917975.54349HepG2GTF2F1
chr6157733890157733935-intron-Distal3.2779111.05024K562DDX52
chr6157731590157731666-intron-Distal3.028454.07470K562PHF6
chr6157744349157744442-intron-Distal3.738807.56654HepG2PRPF8
chr6157734894157734946-intron-Distal3.3955119.65474HepG2HNRNPL
chr6157733826157733857-intron-Distal3.749033.33192K562SAFB
chr6157734852157734891-intron-Distal4.0428618.92661K562DHX30
chr6157738320157738399-intron-Distal4.455234.92524K562TARDBP
chr6157733395157733433-intron-Distal3.266756.61329HepG2HNRNPL
chr6157734896157734943-intron-Distal3.275069.93394K562HNRNPL
chr6157726588157726658-intron-Distal4.208003.27829HepG2MATR3
chr6157736909157736961-intron-Distal3.322434.88448HepG2HNRNPL
chr6157735131157735180-intron-Distal3.5381011.14800K562HNRNPL
chr6157732781157732819-intron-Distal3.240233.62826K562HNRNPL
chr6157734482157734533-intron-Distal3.199453.21908HepG2SAFB
chr6157733823157733848-intron-Distal3.594006.39350HepG2HNRNPL
chr6157734849157734894-intron-Distal3.2423916.01385HepG2HNRNPL
chr6157731725157731779-intron-Distal3.009147.91304K562HNRNPL
chr6157731497157731558-intron-Distal3.6780410.95330K562DHX30
chr6157734127157734152-intron-Distal5.4277211.95093HepG2HNRNPL
chr6157734855157734891-intron-Distal4.320947.36022K562PHF6
chr6157735151157735180-intron-Distal3.332333.06644K562GTF2F1
chr6157733887157733935-intron-Distal3.4088312.28760K562HNRNPL
chr6157744376157744398-intron-Distal5.8533411.02807K562AQR
chr6157735244157735260-intron-Distal3.065564.54306K562HNRNPL
chr6157733898157733936-intron-Distal3.004454.06913HepG2GTF2F1
chr6157734892157734938-intron-Distal3.313249.76968K562DDX52
chr6157734850157734895-intron-Distal3.214037.71150K562TBRG4
chr6157731426157731549-intron-Distal3.7596413.14200K562DDX52
chr6157735005157735046-intron-Distal3.116644.73028HepG2GTF2F1
chr6157734475157734545-intron-Distal3.290369.87893K562HNRNPL
chr6157733898157733939-intron-Distal3.0103012.16156K562DHX30
chr6157733403157733431-intron-Distal3.386266.43604K562HNRNPL
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for TMEM242 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for TMEM242 is not available on ENCORE database.

  • 57 RBPs can affect the levels of TMEM242.  








The Knockdown/knockout RNA-Seq assay for TMEM242 is not available on ENCORE database.





57 RBPs can affect the gene expression of TMEM242 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
TMEM242ENSG00000215712.6512.07360300.439000.769209.448508.46190HepG2ACO1
TMEM242ENSG00000215712.6764.44670573.532200.414402.216301.73430HepG2AKAP1
TMEM242ENSG00000215712.6679.18150434.842600.643205.944104.99920HepG2AUH
TMEM242ENSG00000215712.6402.02470272.449000.561202.914502.12530HepG2CALR
TMEM242ENSG00000215712.6623.33910437.254500.511404.291603.52210HepG2CELF1
TMEM242ENSG00000215712.6469.60760327.201500.521202.218901.52000HepG2DDX55
TMEM242ENSG00000215712.6332.90260488.16510-0.552302.583001.91670HepG2EIF4B
TMEM242ENSG00000215712.6351.21980463.85890-0.401302.165801.40960HepG2EIF4G1
TMEM242ENSG00000215712.6744.51560499.250200.576407.145406.25420HepG2ETF1
TMEM242ENSG00000215712.6570.49010317.806300.844005.977204.88760HepG2FIP1L1
TMEM242ENSG00000215712.6376.32610505.83020-0.426702.186901.56830HepG2FXR1
TMEM242ENSG00000215712.6443.98800302.206100.554903.390502.25770HepG2GNB2L1
TMEM242ENSG00000215712.6350.40310218.238100.683003.347202.66160HepG2HNRNPLL
TMEM242ENSG00000215712.6436.30940310.876300.488902.845501.61530HepG2LIN28B
TMEM242ENSG00000215712.6379.55680506.00630-0.414802.089701.51680HepG2MAGOH
TMEM242ENSG00000215712.6391.89320520.86100-0.410402.001201.45830HepG2NCBP2
TMEM242ENSG00000215712.6341.02790435.13380-0.351602.191501.64090HepG2PCBP1
TMEM242ENSG00000215712.6490.32650305.267900.683603.053102.31470HepG2RAVER1
TMEM242ENSG00000215712.6633.86570417.282300.603106.110005.41400HepG2RBM22
TMEM242ENSG00000215712.6516.12240387.605200.413002.310701.67790HepG2RPLP0
TMEM242ENSG00000215712.6331.32440471.00530-0.507502.448101.69410HepG2RPS3A
TMEM242ENSG00000215712.6626.64140290.717501.1079010.509609.13280HepG2SF3A3
TMEM242ENSG00000215712.6300.46560216.022400.475902.230901.59350HepG2SF3B1
TMEM242ENSG00000215712.6559.23810240.359301.218202.790402.00670HepG2SNRNP70
TMEM242ENSG00000215712.6870.77640471.307700.8855016.5880015.63290HepG2SRFBP1
TMEM242ENSG00000215712.6623.60100481.158100.374002.935802.45240HepG2SRSF1
TMEM242ENSG00000215712.6466.20190325.696500.517302.199001.58610HepG2SUPV3L1
TMEM242ENSG00000215712.6395.22240292.344200.434902.607902.11980HepG2TIAL1
TMEM242ENSG00000215712.6401.04580271.860800.560803.113002.44860HepG2U2AF1
TMEM242ENSG00000215712.6497.09120212.003001.229303.770402.60900HepG2U2AF2
TMEM242ENSG00000215712.6426.67660248.916900.777407.371806.47190HepG2UTP3
TMEM242ENSG00000215712.6310.57920200.560900.630804.608203.77720HepG2ZC3H8
TMEM242ENSG00000215712.6394.16950283.554800.475103.670603.06500HepG2ZNF622
TMEM242ENSG00000215712.61236.84750709.880300.8009017.5310016.22550K562AGGF1
TMEM242ENSG00000215712.61025.23570780.103600.394103.417102.30000K562AKAP8
TMEM242ENSG00000215712.61340.65220738.675500.8598013.8542012.22100K562AKAP8L
TMEM242ENSG00000215712.61063.39180775.072800.456204.769903.53550K562ATP5C1
TMEM242ENSG00000215712.6999.89260794.786800.331102.973802.06000K562DKC1
TMEM242ENSG00000215712.6629.49420451.499600.479402.780901.49900K562EEF2
TMEM242ENSG00000215712.6751.62420508.352700.564105.001503.83790K562FIP1L1
TMEM242ENSG00000215712.61131.53680686.417800.721003.177101.84320K562HNRNPA2B1
TMEM242ENSG00000215712.6986.09800689.176100.516804.537603.52380K562HSPD1
TMEM242ENSG00000215712.61305.62980783.874100.736007.056605.59420K562KIF1C
TMEM242ENSG00000215712.61155.71290878.143300.396203.535802.48940K562MBNL1
TMEM242ENSG00000215712.61268.13480615.518801.042707.241005.55830K562NAA15
TMEM242ENSG00000215712.6900.55030670.696300.425003.361102.28380K562PCBP2
TMEM242ENSG00000215712.6740.14350577.124300.358802.322101.57160K562PPIG
TMEM242ENSG00000215712.6679.89250424.547300.679305.842504.75030K562PRPF8
TMEM242ENSG00000215712.61646.98550732.471201.1689021.9973020.49070K562PUS1
TMEM242ENSG00000215712.61280.45850713.759300.8431016.8124015.33480K562RBM15
TMEM242ENSG00000215712.6585.11610432.499500.435902.537801.75670K562RPS19
TMEM242ENSG00000215712.6447.38490647.37280-0.533103.440902.31390K562RPS3
TMEM242ENSG00000215712.6897.22820549.000100.708602.718401.53200K562SF1
TMEM242ENSG00000215712.6746.11920609.487100.291702.148101.42190K562SF3A3
TMEM242ENSG00000215712.6937.36470717.881000.384803.170202.41780K562SRSF1
TMEM242ENSG00000215712.6409.34470624.99060-0.610505.158103.64480K562SRSF4
TMEM242ENSG00000215712.6700.10260521.950400.423603.828202.43680K562SRSF7
TMEM242ENSG00000215712.6564.04990726.59370-0.365302.251001.60840K562TARDBP
TMEM242ENSG00000215712.6326.81850451.56880-0.466502.506601.61360K562TRIM56
TMEM242ENSG00000215712.6703.86600560.443400.328602.137701.36970K562WDR3
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for TMEM242 is not available on ENCORE database.





3 RBPs can affect the splicing of TMEM242 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SETMEM242ENSG00000215712.6chr6-1577389611577390451577104171577140311577398131577399510.290000.000000.00000includedHepG2U2AF1
SETMEM242ENSG00000215712.6chr6-1577389611577390451577104171577140311577398131577399510.740000.000000.00000includedHepG2U2AF2
A3SSTMEM242ENSG00000215712.6chr6-1577398131577400321577398131577399511577437361577438370.092000.000000.00000longerK562AQR

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for TMEM242 is not avaliable on ENCORE database.