TBRG1

General Information

Gene Name       : TBRG1
Gene ID             : ENSG00000154144.12
Essential Gene : No

Functions

Localization

Domains (AlphaFold: TBRG1)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878TBRG1ENSG00000154144.1214.8114.6214.71ENCSR000AEF
HepG2TBRG1ENSG00000154144.127.8712.3810.12ENCSR985KAT
K562TBRG1ENSG00000154144.1214.7113.7714.24ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for TBRG1 is not avaliable on ENCORE database.



Proteins bound to RNA
  • TBRG1 RNA is bound by 14 proteins.  







eCLIP assay for TBRG1 is not avaliable on ENCORE database.





14 proteins are bound to TBRG1 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr11124500294124500395+3'-UTR,CDS,intron-Proximal4.301965.94114HepG2BUD13
chr11124496809124496882+3'-UTR,5'-UTR,CDS3.024895.21025HepG2PPIG
chr11124500677124500752+3'-UTR,CDS,intron-Proximal3.355414.27261HepG2GRWD1
chr11124500300124500379+3'-UTR,CDS3.475843.66187K562ZNF622
chr11124496794124496852+3'-UTR,5'-UTR,CDS,intron-Proximal3.250113.80334HepG2U2AF2
chr11124500283124500361+3'-UTR,CDS,intron-Proximal3.343744.24993HepG2PPIG
chr11124501985124502038+3'-UTR,CDS,intron-Proximal3.206114.56058HepG2BCLAF1
chr11124500291124500374+3'-UTR,CDS3.261604.02291HepG2GRWD1
chr11124500691124500749+3'-UTR,CDS3.321415.15500HepG2BCLAF1
chr11124500590124500717+3'-UTR,CDS,intron-Proximal3.121703.46866HepG2U2AF2
chr11124501987124502126+3'-UTR,CDS,intron-Proximal4.311103.44763HepG2LSM11
chr11124495601124495650+5'-UTR,CDS,intron-Distal3.846563.60441HepG2GRWD1
chr11124494842124494892+5'-UTR,CDS,intron-Distal3.176663.55800HepG2BCLAF1
chr11124492895124492994+5'-UTR,CDS3.663696.50751HepG2SRSF1
chr11124494867124494900+5'-UTR,CDS,intron-Distal,intron-Proximal4.094593.43980K562ZNF622
chr11124495543124495625+5'-UTR,CDS,intron-Distal,intron-Proximal4.0025314.25913HepG2U2AF2
chr11124492908124492984+5'-UTR,CDS3.272783.85127HepG2GRWD1
chr11124493089124493201+5'-UTR,CDS,intron-Proximal3.993538.47952HepG2PRPF8
chr11124492843124493123+5'-UTR,CDS3.851093.06243HepG2SRSF7
chr11124492766124492901+5'-UTR4.034396.88275HepG2NCBP2
chr11124492809124492855+5'-UTR4.089634.08283K562DDX3X
chr11124492855124492900+5'-UTR4.454603.86664K562DDX3X
chr11124495560124495636+5'-UTR,CDS,intron-Distal,intron-Proximal3.007055.92720K562ZNF622
chr11124496882124496948+5'-UTR,CDS,intron-Proximal3.535266.51082HepG2PPIG
chr11124495690124495760+CDS,intron-Distal3.760343.34184HepG2GRWD1
chr11124495784124495841+CDS,intron-Distal,intron-Proximal4.840545.35117HepG2PRPF8
chr11124496954124497048+intron-Distal,intron-Proximal3.023835.17040K562KHSRP
chr11124495809124495912+intron-Distal,intron-Proximal3.352084.46994K562QKI
chr11124495815124495955+intron-Distal,intron-Proximal6.9779623.62407HepG2QKI
chr11124496961124497023+intron-Proximal4.530824.58968K562PRPF8
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for TBRG1 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for TBRG1 is not available on ENCORE database.

  • 60 RBPs can affect the levels of TBRG1.  








The Knockdown/knockout RNA-Seq assay for TBRG1 is not available on ENCORE database.





60 RBPs can affect the gene expression of TBRG1 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
TBRG1ENSG00000154144.8772.64070558.508500.468105.560404.75850HepG2ACO1
TBRG1ENSG00000154144.8990.24090760.668800.380404.199103.38610HepG2AUH
TBRG1ENSG00000154144.8653.17570510.579400.355202.438401.71110HepG2CALR
TBRG1ENSG00000154144.8589.57960804.01870-0.447502.407701.50520HepG2CCAR1
TBRG1ENSG00000154144.8377.86400524.27800-0.472502.907902.20560HepG2CPSF6
TBRG1ENSG00000154144.8550.70470758.68840-0.462205.662604.65510HepG2DAZAP1
TBRG1ENSG00000154144.8720.38210463.519200.636005.849204.90320HepG2DDX21
TBRG1ENSG00000154144.81015.02960672.498000.593805.004304.18440HepG2DDX3X
TBRG1ENSG00000154144.8773.38540577.716400.420702.353501.77990HepG2DDX6
TBRG1ENSG00000154144.8678.68330534.342400.344902.742702.06810HepG2DKC1
TBRG1ENSG00000154144.8457.25420613.71010-0.424602.179101.60840HepG2EIF4A3
TBRG1ENSG00000154144.81390.61480873.329100.6710013.7415012.56570HepG2ETF1
TBRG1ENSG00000154144.8660.86540395.991100.738807.221006.24960HepG2HNRNPA1
TBRG1ENSG00000154144.8985.33720567.168900.796708.823307.76910HepG2HNRNPLL
TBRG1ENSG00000154144.8588.75130437.569500.428003.896003.18800HepG2HNRNPU
TBRG1ENSG00000154144.8864.99350583.879700.566904.582903.73370HepG2IGF2BP2
TBRG1ENSG00000154144.8597.97990446.960100.419904.062903.19230HepG2ILF2
TBRG1ENSG00000154144.8701.71220505.268300.473703.351202.01270HepG2LIN28B
TBRG1ENSG00000154144.8887.47870619.463000.518603.814903.04470HepG2MAGOH
TBRG1ENSG00000154144.8728.59520550.651300.403902.757301.95030HepG2MSI2
TBRG1ENSG00000154144.8670.09440502.897000.414002.543801.82510HepG2NSUN2
TBRG1ENSG00000154144.8585.32450433.098900.434403.749902.78130HepG2PARN
TBRG1ENSG00000154144.8729.99480557.765700.388103.378002.72220HepG2PCBP1
TBRG1ENSG00000154144.8884.98620718.147500.301301.980901.46520HepG2PUF60
TBRG1ENSG00000154144.8818.75860530.240800.626703.095802.35250HepG2RAVER1
TBRG1ENSG00000154144.81021.51020803.943600.345402.824101.95870HepG2RBM15
TBRG1ENSG00000154144.81037.71900729.945800.507506.212105.51130HepG2RBM22
TBRG1ENSG00000154144.8983.08410725.033000.439203.656202.88900HepG2RPLP0
TBRG1ENSG00000154144.8446.73430341.844400.386002.138701.59150HepG2RPS19
TBRG1ENSG00000154144.8468.84000343.116600.450302.619601.70590HepG2SERBP1
TBRG1ENSG00000154144.81198.11680787.069500.606104.428403.56450HepG2SF3A3
TBRG1ENSG00000154144.8870.30860561.390500.632406.166805.14800HepG2SF3B1
TBRG1ENSG00000154144.8735.06070590.914500.314802.303901.75740HepG2SF3B4
TBRG1ENSG00000154144.8760.29590540.458800.492302.744001.79150HepG2SMNDC1
TBRG1ENSG00000154144.81226.56310824.454400.5730010.233109.43580HepG2SRFBP1
TBRG1ENSG00000154144.8821.39370661.254700.312802.771402.07530HepG2SRSF7
TBRG1ENSG00000154144.8956.91880715.834800.418705.183604.52500HepG2SSB
TBRG1ENSG00000154144.8660.11630425.120600.634706.697205.98070HepG2TIAL1
TBRG1ENSG00000154144.81066.46890582.042200.8735010.779009.51830HepG2U2AF1
TBRG1ENSG00000154144.8383.22460280.928900.447902.204701.52680HepG2UCHL5
TBRG1ENSG00000154144.8542.58150673.90170-0.312702.407501.84040HepG2UTP3
TBRG1ENSG00000154144.81194.05880767.677800.6372013.8327012.84420HepG2ZNF622
TBRG1ENSG00000154144.8832.453901018.93030-0.291602.131601.62200K562AGGF1
TBRG1ENSG00000154144.8798.712401060.21730-0.408603.554902.81060K562AKAP8L
TBRG1ENSG00000154144.81866.10160964.633100.9519016.0035014.75010K562AQR
TBRG1ENSG00000154144.8921.058301112.37440-0.272302.497101.63280K562ATP5C1
TBRG1ENSG00000154144.81182.07060837.457200.497106.852005.79450K562EIF2S2
TBRG1ENSG00000154144.8877.11630625.112400.488603.617102.18360K562HNRNPK
TBRG1ENSG00000154144.81008.01020770.329300.387903.866702.80680K562HNRNPU
TBRG1ENSG00000154144.81480.933301066.228500.473904.413503.41510K562HSPD1
TBRG1ENSG00000154144.8820.98120657.758500.319702.308801.53720K562MAGOH
TBRG1ENSG00000154144.8521.94580656.43830-0.330802.156101.35180K562MATR3
TBRG1ENSG00000154144.8945.923701260.54730-0.414304.361303.17030K562MBNL1
TBRG1ENSG00000154144.8948.80470735.780300.366703.872402.93050K562MTPAP
TBRG1ENSG00000154144.81782.174601382.914400.365803.061301.48720K562NOL12
TBRG1ENSG00000154144.81854.633501299.076900.513506.898604.79790K562PNPT1
TBRG1ENSG00000154144.8487.89120616.46400-0.337502.080301.38550K562POLR2G
TBRG1ENSG00000154144.82373.761201379.405800.7830012.2098010.48580K562PUF60
TBRG1ENSG00000154144.81755.072001437.577900.287803.007002.00920K562PUM2
TBRG1ENSG00000154144.8765.640501024.50140-0.420204.516203.77750K562RBM15
TBRG1ENSG00000154144.81181.94260806.679400.551007.976306.65250K562SF3A3
TBRG1ENSG00000154144.81011.23240826.459900.291002.960501.99760K562SRPK2
TBRG1ENSG00000154144.8810.20060634.049300.353602.256101.61280K562TARDBP
TBRG1ENSG00000154144.8801.35820523.813000.613304.811703.28940K562U2AF1
TBRG1ENSG00000154144.8883.97590540.951000.708409.600108.10100K562U2AF2
TBRG1ENSG00000154144.81280.11330866.835800.562309.663008.42060K562UPF1
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for TBRG1 is not available on ENCORE database.





8 RBPs can affect the splicing of TBRG1 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SETBRG1ENSG00000154144.8chr11+1244963681244965051244955661244957991244967991244969460.237000.000790.05048includedHepG2RBM22
SETBRG1ENSG00000154144.8chr11+124496368124496505124495566124495799124496799124496946-0.212000.000050.00159excludedHepG2U2AF1
SETBRG1ENSG00000154144.8chr11+124496368124496505124495566124495799124496799124496946-0.326000.000000.00000excludedHepG2U2AF2
SETBRG1ENSG00000154144.8chr11+1244963681244965051244955661244957991244967991244969460.309000.000030.00784includedK562RBM22
SETBRG1ENSG00000154144.8chr11+1244963681244965051244955661244957991244967991244969460.200000.001180.04266includedK562HNRNPU
SETBRG1ENSG00000154144.8chr11+1244963681244965051244955661244957991244967991244969460.468000.000000.00000includedK562HNRNPK
SETBRG1ENSG00000154144.8chr11+1244963681244965051244955661244957991244967991244969460.256000.000220.09684includedHepG2SLTM
SETBRG1ENSG00000154144.8chr11+124496368124496505124495566124495799124496799124496946-0.178000.000070.00207excludedK562HNRNPC
A3SSTBRG1ENSG00000154144.8chr11+1245006071245007511245006401245007511245002831245003810.104000.000000.00000longerK562AQR
A3SSTBRG1ENSG00000154144.8chr11+1244967771244969461244967991244969461244955661244957990.106000.003220.01962longerK562AQR
A5SSTBRG1ENSG00000154144.8chr11+124500702124500907124500702124500751124501135124501313-0.550000.006490.08928shorterK562AQR

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for TBRG1 is not avaliable on ENCORE database.