SNRPN

General Information

Gene Name       : SNRPN
Gene ID             : ENSG00000128739.22
Essential Gene : No

Functions

Localization

Domains (AlphaFold: SNRPN)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878SNRPNENSG00000128739.2219.7025.9922.84ENCSR000AEF
HepG2SNRPNENSG00000128739.2292.7869.5581.16ENCSR985KAT
K562SNRPNENSG00000128739.220.140.150.15ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for SNRPN is not avaliable on ENCORE database.



Proteins bound to RNA
  • SNRPN RNA is bound by 23 proteins.  







eCLIP assay for SNRPN is not avaliable on ENCORE database.





23 proteins are bound to SNRPN RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr152521978025219856+3'-UTR,5'-UTR,intron-Distal,intron-Proximal4.8205313.24694HepG2HNRNPC
chr152522363325223749+3'-UTR,intron-Distal,polyA_signal,polyA_site3.149309.91869HepG2KHSRP
chr152521949325219520+3'-UTR,5'-UTR,intron-Distal,intron-Proximal3.541499.99495HepG2U2AF2
chr152520731125207385+3'-UTR,5'-UTR,CDS,intron-Proximal3.6950010.28427HepG2GRWD1
chr152520725825207311+3'-UTR,5'-UTR,CDS,intron-Proximal3.7746314.78539HepG2GRWD1
chr152521944425219485+3'-UTR,5'-UTR,intron-Distal,intron-Proximal3.8446312.40879HepG2U2AF2
chr152522358525223652+3'-UTR,CDS,intron-Distal3.169544.43259HepG2PPIG
chr152522359725223703+3'-UTR,intron-Distal3.323319.86277HepG2LARP4
chr152522349625223593+3'-UTR,CDS,intron-Distal,intron-Proximal3.552697.03098HepG2EFTUD2
chr152522374925223817+3'-UTR,intron-Distal3.218568.92922HepG2KHSRP
chr152522373025223831+3'-UTR,intron-Distal4.702795.65087HepG2CSTF2
chr152520013525200188+5'-UTR,intron-Distal3.029396.30921HepG2SRSF1
chr152520015425200211+5'-UTR,CDS,intron-Distal,intron-Proximal3.9550715.18195HepG2GRWD1
chr152522050425220538+3'-UTR,CDS,intron-Distal,intron-Proximal3.203706.39923HepG2BCLAF1
chr152522148225221541+3'-UTR,CDS,intron-Distal3.129264.75394HepG2LARP4
chr152522212425222169+3'-UTR,CDS,intron-Distal3.515526.60490HepG2BCLAF1
chr152522340125223453+3'-UTR,CDS,intron-Distal3.401664.76536HepG2PRPF8
chr152522147725221563+3'-UTR,CDS,intron-Distal3.4774123.49731HepG2PPIG
chr152522204025222095+3'-UTR,CDS,intron-Distal3.150435.14791HepG2BCLAF1
chr152522206425222141+3'-UTR,CDS,intron-Distal3.488603.81692HepG2LIN28B
chr152522202325222109+3'-UTR,CDS,intron-Distal,intron-Proximal3.435914.27313HepG2PABPN1
chr152522345325223509+3'-UTR,CDS,intron-Distal,intron-Proximal4.3465910.10256HepG2PRPF8
chr152522149325221563+3'-UTR,CDS,intron-Distal3.0156310.52099HepG2BCLAF1
chr152522202125222098+3'-UTR,CDS,intron-Distal,intron-Proximal3.4929815.99835HepG2PPIG
chr152522335025223442+3'-UTR,CDS,intron-Distal3.113765.40041HepG2LARP4
chr152522202325222040+3'-UTR,CDS,intron-Distal,intron-Proximal3.185624.89002HepG2BCLAF1
chr152522145025221477+3'-UTR,CDS,intron-Distal,intron-Proximal3.023906.46638HepG2PPIG
chr152521387725213956+3'-UTR,intron-Distal,intron-Proximal3.056016.73159HepG2U2AF2
chr152520185025201904+intron-Distal3.762413.25631HepG2PRPF4
chr152521288725212934+intron-Distal7.5740178.44540HepG2XPO5
chr152520183825201895+intron-Distal3.281395.36249HepG2CSTF2T
chr152520084925200977+intron-Distal4.212087.68118HepG2RBFOX2
chr152521389625213919+intron-Distal,intron-Proximal5.670467.62903HepG2QKI
chr152521194225212011+intron-Distal3.253263.23948HepG2HNRNPK
chr152521847425218525+intron-Distal4.264244.53660HepG2KHSRP
chr152520085425200944+intron-Distal4.586875.35385HepG2PRPF4
chr152520307025203163+intron-Distal3.346376.51048HepG2HNRNPM
chr152520095725201053+intron-Distal4.6252712.55969HepG2CSTF2T
chr152520904925209099+intron-Distal3.543365.31375HepG2ILF3
chr152520119425201239+intron-Distal3.166083.69530HepG2CSTF2T
chr152520099225201048+intron-Distal3.579717.14301HepG2FAM120A
chr152522077225220811+intron-Distal3.748775.58296HepG2EFTUD2
chr152520097725201041+intron-Distal4.441805.04056HepG2RBFOX2
chr152522068425220772+intron-Distal,intron-Proximal4.9428117.68434HepG2EFTUD2
chr152520105325201118+intron-Distal3.338705.45050HepG2CSTF2T
chr152520051025200593+intron-Distal4.280224.61288HepG2PRPF4
chr152520048325200569+intron-Distal4.383989.54933HepG2RBFOX2
chr152521391925213959+3'-UTR,intron-Distal,intron-Proximal4.899538.76637HepG2QKI
chr152521966225219722+intron-Distal,intron-Proximal4.470944.61506HepG2EFTUD2
chr152521853425218604+intron-Distal3.100163.42396HepG2U2AF2
chr152520912925209179+intron-Distal3.279343.58752HepG2ILF3
chr152520096325201059+intron-Distal4.255413.58513HepG2GTF2F1
chr152520760525207665+intron-Distal3.453504.31768HepG2KHSRP
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for SNRPN is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for SNRPN is not available on ENCORE database.

  • 37 RBPs can affect the levels of SNRPN.  








The Knockdown/knockout RNA-Seq assay for SNRPN is not available on ENCORE database.





37 RBPs can affect the gene expression of SNRPN :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
SNRPNENSG00000128739.16293.23170371.23650-0.340302.075301.46490HepG2AUH
SNRPNENSG00000128739.16346.27060201.487600.781104.889903.87710HepG2CIRBP
SNRPNENSG00000128739.16356.54280226.397000.655105.567704.68430HepG2CKAP4
SNRPNENSG00000128739.16201.38540118.126400.769503.184701.69010HepG2CSTF2T
SNRPNENSG00000128739.16340.60970209.460200.701305.027903.94870HepG2DDX19B
SNRPNENSG00000128739.16348.04310245.519600.503301.899701.37160HepG2DDX3X
SNRPNENSG00000128739.16359.43080248.672000.531402.897101.86390HepG2DDX5
SNRPNENSG00000128739.16295.10210210.935900.484301.928801.40460HepG2DDX6
SNRPNENSG00000128739.16283.72140202.748500.484702.003901.48960HepG2EIF2S1
SNRPNENSG00000128739.16168.9727078.745701.101404.755503.59430HepG2EIF3D
SNRPNENSG00000128739.16541.61300218.168001.3117010.321709.03680HepG2EIF4B
SNRPNENSG00000128739.16370.70620239.638700.629303.549002.31930HepG2ESF1
SNRPNENSG00000128739.16521.59930426.238900.291201.835901.32510HepG2ETF1
SNRPNENSG00000128739.16377.93000221.284200.772102.828701.98450HepG2EWSR1
SNRPNENSG00000128739.16287.93770209.715300.457201.865701.31360HepG2G3BP1
SNRPNENSG00000128739.16169.2942070.111501.271706.568905.18820HepG2GEMIN5
SNRPNENSG00000128739.16250.65950169.125000.567502.963802.00210HepG2HNRNPA2B1
SNRPNENSG00000128739.16294.60780167.642700.813306.496605.50690HepG2HNRNPL
SNRPNENSG00000128739.16408.55570226.175800.853006.065105.10230HepG2MAGOH
SNRPNENSG00000128739.16289.27700212.622300.444101.990901.32690HepG2PRPF4
SNRPNENSG00000128739.16252.05260174.194700.532902.406101.84470HepG2PUF60
SNRPNENSG00000128739.16280.96310184.911500.603404.071103.38160HepG2PUM1
SNRPNENSG00000128739.16473.98390230.706201.0387014.5158013.29900HepG2PUS1
SNRPNENSG00000128739.16191.42530269.40180-0.493002.138901.52840HepG2RPLP0
SNRPNENSG00000128739.16234.25530145.998600.682002.761101.81860HepG2RPS10
SNRPNENSG00000128739.16159.9005076.627601.061104.928404.13500HepG2RPS19
SNRPNENSG00000128739.16458.49530286.668000.677401.865601.30910HepG2SF3A3
SNRPNENSG00000128739.16407.30210171.987301.2437016.1043014.77090HepG2SRSF5
SNRPNENSG00000128739.16467.91100349.348800.421503.112702.57580HepG2SSB
SNRPNENSG00000128739.16259.20590195.600900.406101.878101.34710HepG2SUCLG1
SNRPNENSG00000128739.16285.73340187.596700.606902.849002.11580HepG2TARDBP
SNRPNENSG00000128739.16118.4085062.569800.920103.195301.51040HepG2TROVE2
SNRPNENSG00000128739.16118.9357066.658300.835202.113101.45080HepG2UCHL5
SNRPNENSG00000128739.16223.24620103.268901.112103.103902.04110HepG2UPF2
SNRPNENSG00000128739.16330.67400245.449300.429902.478601.90530HepG2UTP3
SNRPNENSG00000128739.16298.06630111.122301.423408.278307.04010HepG2XRN2
SNRPNENSG00000128739.1611.706800.621204.236002.821501.90130K562MBNL1
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for SNRPN is not available on ENCORE database.





1 RBPs can affect the splicing of SNRPN :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SESNRPNENSG00000128739.16chr15+2521978825220104252195042521960325220504252206560.069000.000000.00007includedHepG2HNRNPC

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for SNRPN is not avaliable on ENCORE database.