SMDT1

General Information

Gene Name       : SMDT1
Gene ID             : ENSG00000183172.8
Essential Gene : No

Functions

Localization

Domains (AlphaFold: SMDT1)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878SMDT1ENSG00000183172.815.7718.9317.35ENCSR000AEF
HepG2SMDT1ENSG00000183172.826.0115.9620.98ENCSR985KAT
K562SMDT1ENSG00000183172.819.249.1014.17ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for SMDT1 is not avaliable on ENCORE database.



Proteins bound to RNA
  • SMDT1 RNA is bound by 11 proteins.  







eCLIP assay for SMDT1 is not avaliable on ENCORE database.





11 proteins are bound to SMDT1 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr224247922842479307+3'-UTR3.6731611.38185K562YBX3
chr224247923042479325+3'-UTR4.7585211.18522HepG2LARP4
chr224247915742479206+3'-UTR3.628437.86995K562YBX3
chr224247922942479306+3'-UTR4.621073.61011HepG2AKAP1
chr224247572842475794+5'-UTR,CDS3.052226.61912HepG2GRSF1
chr224247573142475861+5'-UTR,CDS4.2988829.26169HepG2DDX3X
chr224247571242475797+5'-UTR,CDS3.064436.88823K562DDX3X
chr224247572542475802+5'-UTR,CDS3.747618.02406K562PABPC4
chr224247572642475851+5'-UTR,CDS3.212174.55081K562GTF2F1
chr224247570542475824+5'-UTR,CDS4.3177816.10450HepG2PRPF4
chr224247572542475806+5'-UTR,CDS3.4857310.18618K562GEMIN5
chr224247573342475802+5'-UTR,CDS3.028554.15113K562FTO
chr224247572942475806+5'-UTR,CDS3.922714.12910K562DROSHA
chr224247579742475898+CDS4.1649113.18683K562DDX3X
chr224247580542475842+CDS4.096993.74262HepG2LARP4
chr224247586242475912+CDS,intron-Proximal3.023774.57383K562YBX3
chr224247579442475855+CDS3.181633.14078HepG2GRSF1
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for SMDT1 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for SMDT1 is not available on ENCORE database.

  • 68 RBPs can affect the levels of SMDT1.  








The Knockdown/knockout RNA-Seq assay for SMDT1 is not available on ENCORE database.





68 RBPs can affect the gene expression of SMDT1 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
SMDT1ENSG00000183172.8136.3881082.227400.729902.597201.62960HepG2ADAR
SMDT1ENSG00000183172.8364.72590662.17100-0.860405.336704.62720HepG2AKAP1
SMDT1ENSG00000183172.8138.4898084.321000.715702.678801.67870HepG2YBX3
SMDT1ENSG00000183172.8370.31970272.637400.441703.259802.46550HepG2DAZAP1
SMDT1ENSG00000183172.8390.25950634.21180-0.700504.244603.48310HepG2DDX3X
SMDT1ENSG00000183172.8111.25170182.72000-0.715802.735001.96520HepG2DDX55
SMDT1ENSG00000183172.8346.96520545.03150-0.651503.672102.96850HepG2DDX6
SMDT1ENSG00000183172.8301.11850201.565400.579003.529602.77940HepG2DKC1
SMDT1ENSG00000183172.8124.3591082.802800.586701.929101.33060HepG2DNAJC21
SMDT1ENSG00000183172.8396.58410523.72330-0.401202.001101.48720HepG2EIF2S1
SMDT1ENSG00000183172.8255.38170563.62300-1.142107.034005.96530HepG2EIF4B
SMDT1ENSG00000183172.8405.64210257.683900.654504.544203.51680HepG2EIF4G2
SMDT1ENSG00000183172.8169.67490261.70770-0.625203.235302.38960HepG2FUBP3
SMDT1ENSG00000183172.878.25970154.15980-0.978103.915002.59270HepG2FUS
SMDT1ENSG00000183172.8302.98650584.18370-0.947205.803704.82510HepG2FXR1
SMDT1ENSG00000183172.8347.91580541.73990-0.638903.826703.04920HepG2G3BP1
SMDT1ENSG00000183172.8379.77000575.35650-0.599303.151002.19980HepG2G3BP2
SMDT1ENSG00000183172.8191.3029092.982201.040705.099604.18090HepG2HNRNPC
SMDT1ENSG00000183172.8368.35270248.340700.568704.677503.81800HepG2HNRNPL
SMDT1ENSG00000183172.8261.19130550.60420-1.075907.765806.69350HepG2IGF2BP2
SMDT1ENSG00000183172.8255.46620516.97060-1.016903.317002.23800HepG2IGF2BP3
SMDT1ENSG00000183172.8405.32510553.93090-0.450602.180101.30320HepG2KHSRP
SMDT1ENSG00000183172.8245.01040584.38920-1.254108.142607.02960HepG2MAGOH
SMDT1ENSG00000183172.8328.87750587.60550-0.837305.327604.47670HepG2MATR3
SMDT1ENSG00000183172.884.74410143.57330-0.760602.815702.00040HepG2MSI2
SMDT1ENSG00000183172.8341.01120601.40260-0.818505.182904.32820HepG2NCBP2
SMDT1ENSG00000183172.8391.35640270.348700.533603.879002.97610HepG2NOL12
SMDT1ENSG00000183172.880.27850167.82980-1.063903.199502.01840HepG2NONO
SMDT1ENSG00000183172.8324.69380535.38480-0.721504.393003.49690HepG2PABPC4
SMDT1ENSG00000183172.8275.21880540.09740-0.9726013.5599012.37700HepG2PCBP1
SMDT1ENSG00000183172.8131.6931082.385100.676602.544001.83410HepG2PPIL4
SMDT1ENSG00000183172.8236.90050549.58650-1.2141018.6407017.45970HepG2PTBP1
SMDT1ENSG00000183172.8357.96010258.081600.471902.662302.07590HepG2PUF60
SMDT1ENSG00000183172.8369.08450595.17900-0.689406.863005.94470HepG2QKI
SMDT1ENSG00000183172.857.71750140.85050-1.287104.323303.45180HepG2RAVER1
SMDT1ENSG00000183172.8239.62280540.17710-1.1727014.7865013.29570HepG2RBM25
SMDT1ENSG00000183172.8302.55600197.574000.614702.787301.79230HepG2RBM27
SMDT1ENSG00000183172.8254.39840160.439600.665002.324301.35470HepG2RCC2
SMDT1ENSG00000183172.8312.81740611.62270-0.9673013.2277012.20450HepG2NELFE
SMDT1ENSG00000183172.8388.15800569.66950-0.553505.140604.33450HepG2RECQL
SMDT1ENSG00000183172.8211.53490138.330600.612702.172001.33240HepG2RPS10
SMDT1ENSG00000183172.8154.4877082.259200.909103.963503.21610HepG2SAFB2
SMDT1ENSG00000183172.8235.02410572.15950-1.2836020.6417019.27320HepG2SF3B4
SMDT1ENSG00000183172.8372.52730247.484300.589904.962504.06550HepG2SLBP
SMDT1ENSG00000183172.8181.77450597.22330-1.7161033.6804032.42960HepG2SRSF1
SMDT1ENSG00000183172.8166.1726097.193300.773703.212302.46850HepG2SRSF7
SMDT1ENSG00000183172.8318.76400485.88390-0.608106.031205.27260HepG2SRSF9
SMDT1ENSG00000183172.8527.08620356.225300.565105.704605.01920HepG2SSB
SMDT1ENSG00000183172.8236.64850536.84270-1.1818016.8801015.66150HepG2TAF15
SMDT1ENSG00000183172.8313.74390493.24810-0.652705.663904.47880HepG2TIA1
SMDT1ENSG00000183172.8181.9619089.763201.019302.775602.27390HepG2TIAL1
SMDT1ENSG00000183172.8131.7375090.554100.540701.898901.41420HepG2TRIM56
SMDT1ENSG00000183172.865.55030151.75270-1.211005.477504.61120HepG2U2AF1
SMDT1ENSG00000183172.8178.18050266.91390-0.583002.072501.35370HepG2UBE2L3
SMDT1ENSG00000183172.8321.72760217.165700.566902.645401.57960HepG2XPO5
SMDT1ENSG00000183172.8271.17880179.042300.598802.254501.59430HepG2XRN2
SMDT1ENSG00000183172.8383.22440256.751000.577703.315302.59880K562AKAP8L
SMDT1ENSG00000183172.8300.40760222.266000.434502.352701.46970K562BCLAF1
SMDT1ENSG00000183172.8353.63270250.549300.497102.719701.45210K562CIRBP
SMDT1ENSG00000183172.8364.41490273.674900.413002.348601.67700K562EIF2S2
SMDT1ENSG00000183172.8207.00880129.027400.681903.282802.35510K562FIP1L1
SMDT1ENSG00000183172.8217.45310306.26610-0.494102.697102.09850K562FXR1
SMDT1ENSG00000183172.8522.39820364.649400.518503.400002.56380K562GRSF1
SMDT1ENSG00000183172.8224.47460146.506700.615502.156501.43680K562PPIG
SMDT1ENSG00000183172.8380.39610254.612200.579103.571702.96640K562PUS1
SMDT1ENSG00000183172.8135.79110233.99820-0.785104.455103.56120K562SRSF1
SMDT1ENSG00000183172.892.74970150.26960-0.696102.778101.97280K562U2AF2
SMDT1ENSG00000183172.8298.18880212.527900.488502.786902.06530K562UPF1
SMDT1ENSG00000183172.8267.31980181.854600.555702.896802.00080K562WDR3
SMDT1ENSG00000183172.8648.45210490.857800.401602.705301.85360K562ZC3H8
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for SMDT1 is not available on ENCORE database.






No RBPs affect the alternative splcing events of SMDT1 on ENCORE database.





The Knockdown/knockout RNA-Seq assay for SMDT1 is not avaliable on ENCORE database.