RP11-438J1.1

General Information

Gene Name : RP11-438J1.1
Gene ID :
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: RP11-438J1.1)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for RP11-438J1.1 is not avaliable on ENCORE database.

Proteins bound to RNA

RP11-438J1.1 RNA is bound by 23 proteins.

eCLIP assay for RP11-438J1.1 is not avaliable on ENCORE database.

23 proteins are bound to RP11-438J1.1 RNA:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr3	10319905	10319993	+	3'-UTR,CDS,intron-Proximal	4.08574	8.01283	HepG2	SF3A3
chr3	10327397	10327456	+	3'-UTR,intron-Proximal,polyA_site	3.65538	4.57751	HepG2	U2AF2
chr3	10321064	10321138	+	3'-UTR,intron-Distal	5.54537	8.80636	K562	UPF1
chr3	10320713	10320795	+	3'-UTR,intron-Proximal	5.17333	7.02967	HepG2	PRPF8
chr3	10321064	10321113	+	3'-UTR,intron-Distal	4.25578	3.71613	K562	UCHL5
chr3	10321038	10321108	+	3'-UTR,intron-Distal	4.39605	8.32409	HepG2	GTF2F1
chr3	10320111	10320147	+	3'-UTR,CDS,intron-Proximal	4.17368	8.06490	HepG2	PPIG
chr3	10321062	10321165	+	3'-UTR,intron-Distal	4.82609	3.75892	K562	FTO
chr3	10321059	10321140	+	3'-UTR,intron-Distal	4.41766	10.83333	K562	DDX6
chr3	10321045	10321118	+	3'-UTR,intron-Distal	3.03087	6.22789	HepG2	PCBP2
chr3	10320348	10320375	+	3'-UTR,CDS,intron-Distal	3.23668	4.24993	HepG2	PPIG
chr3	10321055	10321130	+	3'-UTR,intron-Distal	3.55808	9.44681	HepG2	FAM120A
chr3	10320106	10320147	+	3'-UTR,CDS,intron-Proximal	3.58353	4.93175	HepG2	GRWD1
chr3	10312559	10312677	+	3'-UTR,CDS	5.69107	12.14650	K562	RBM15
chr3	10320654	10320741	+	3'-UTR,CDS,intron-Proximal	4.25846	9.28811	HepG2	GRWD1
chr3	10320713	10320740	+	3'-UTR,intron-Proximal	3.31373	3.32039	HepG2	PPIG
chr3	10320887	10320941	+	3'-UTR,intron-Distal,intron-Proximal	4.79246	13.77663	K562	U2AF2
chr3	10311847	10311883	+	3'-UTR,CDS	3.90430	3.79347	HepG2	GRWD1
chr3	10327467	10327493	+	3'-UTR	4.17411	3.77802	HepG2	U2AF2
chr3	10312658	10312692	+	3'-UTR,CDS	4.03376	4.28220	HepG2	GRWD1
chr3	10321099	10321111	+	3'-UTR,intron-Distal	3.43722	5.40996	HepG2	PRPF4
chr3	10318147	10318199	+	3'-UTR,CDS,intron-Proximal	4.22962	7.09561	HepG2	BCLAF1
chr3	10312417	10312472	+	3'-UTR,CDS	4.35259	4.70436	K562	RBM15
chr3	10320888	10320939	+	3'-UTR,intron-Distal,intron-Proximal	5.21920	6.47105	K562	U2AF1
chr3	10320884	10320914	+	3'-UTR,intron-Distal,intron-Proximal	5.34112	53.20007	HepG2	U2AF2
chr3	10320061	10320088	+	3'-UTR,CDS	3.75657	3.14999	HepG2	GRWD1
chr3	10321111	10321139	+	3'-UTR,intron-Distal	3.62510	7.70534	HepG2	PRPF4
chr3	10320914	10320946	+	3'-UTR,intron-Distal	5.07244	53.17210	HepG2	U2AF2
chr3	10318109	10318180	+	3'-UTR,CDS,intron-Proximal	3.52076	3.85127	HepG2	GRWD1
chr3	10321052	10321147	+	3'-UTR,intron-Distal	4.11760	12.40118	K562	GTF2F1
chr3	10321060	10321099	+	3'-UTR,intron-Distal	3.97285	13.80024	HepG2	PRPF4
chr3	10327474	10327532	+	3'-UTR	4.26718	4.38106	HepG2	PPIG
chr3	10320885	10320943	+	3'-UTR,intron-Distal,intron-Proximal	3.95038	13.93241	HepG2	U2AF1
chr3	10319972	10320013	+	3'-UTR,CDS	3.59311	4.09885	HepG2	BCLAF1
chr3	10302211	10302288	+	5'-UTR,CDS	3.93449	6.84754	HepG2	GRWD1
chr3	10302060	10302098	+	5'-UTR,CDS	3.53034	3.68471	HepG2	BCLAF1
chr3	10301982	10302125	+	5'-UTR,CDS	3.29658	3.41227	K562	UCHL5
chr3	10302087	10302178	+	5'-UTR,CDS	4.87601	8.08487	HepG2	GRWD1
chr3	10291144	10291193	+	CDS	3.86437	4.80676	K562	RBM15
chr3	10291259	10291338	+	CDS,intron-Proximal	4.80984	8.11807	HepG2	PRPF8
chr3	10291116	10291192	+	CDS	5.07234	5.97170	HepG2	RBM15
chr3	10303854	10303895	+	intron-Distal	4.15305	3.79098	HepG2	SUGP2
chr3	10303742	10303780	+	intron-Distal	3.88502	3.39864	HepG2	SUGP2
chr3	10303496	10303567	+	intron-Distal	3.21450	3.10640	HepG2	SUGP2
chr3	10320767	10320827	+	3'-UTR,intron-Distal,intron-Proximal	4.22298	10.17772	K562	KHSRP
chr3	10327181	10327218	+	intron-Distal	5.56442	43.30590	HepG2	PTBP1
chr3	10327112	10327212	+	intron-Distal	4.97871	25.82804	HepG2	PCBP2
chr3	10327102	10327127	+	intron-Distal	3.78638	3.30744	K562	PTBP1
chr3	10305969	10306018	+	intron-Distal	3.95721	3.63454	HepG2	SUGP2
chr3	10327094	10327147	+	intron-Distal	4.00488	21.74275	HepG2	PTBP1
chr3	10296701	10296769	+	intron-Distal	4.03831	3.57189	K562	ILF3
chr3	10327146	10327211	+	intron-Distal	5.46090	26.16141	K562	PTBP1
chr3	10307604	10307743	+	intron-Distal	4.52201	5.37222	HepG2	MATR3
chr3	10327063	10327214	+	intron-Distal	3.61323	4.72029	K562	MATR3
chr3	10296651	10296762	+	intron-Distal	3.99944	7.47988	HepG2	PCBP2
chr3	10305082	10305139	+	intron-Distal	3.99357	6.24904	HepG2	PTBP1
chr3	10305722	10305762	+	intron-Distal	4.43173	4.05620	HepG2	MATR3
chr3	10295872	10295989	+	intron-Distal	5.08646	4.96472	K562	LSM11
chr3	10305649	10305717	+	intron-Distal	3.48741	4.46039	HepG2	MATR3
chr3	10327103	10327229	+	intron-Distal	3.02446	8.69523	HepG2	MATR3
chr3	10305455	10305525	+	intron-Distal	3.72701	6.23177	HepG2	SUGP2
chr3	10323811	10323899	+	intron-Distal	3.97387	3.71997	HepG2	ILF3
chr3	10305629	10305697	+	intron-Distal	4.49730	4.78128	HepG2	SUGP2
chr3	10298552	10298709	+	intron-Distal	3.68641	3.15816	HepG2	PRPF4
chr3	10327147	10327181	+	intron-Distal	5.42071	49.98401	HepG2	PTBP1
chr3	10305084	10305144	+	intron-Distal	5.51705	6.90462	K562	PTBP1
chr3	10327127	10327146	+	intron-Distal	3.91160	10.46407	K562	PTBP1
chr3	10305359	10305454	+	intron-Distal	3.64722	5.12973	HepG2	MATR3
chr3	10307654	10307769	+	intron-Distal	4.10150	3.79098	HepG2	SUGP2
chr3	10321783	10321840	+	3'-UTR,intron-Distal	3.33663	5.13860	K562	PUM2
chr3	10320827	10320873	+	3'-UTR,intron-Distal,intron-Proximal,polyA_site	3.25283	4.52210	K562	KHSRP
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

eCLIP assay for RP11-438J1.1 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for RP11-438J1.1 is not available on ENCORE database.
37 RBPs can affect the levels of RP11-438J1.1.

The Knockdown/knockout RNA-Seq assay for RP11-438J1.1 is not available on ENCORE database.

37 RBPs can affect the gene expression of RP11-438J1.1 :

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
RP11-438J1.1	ENSG00000272410.1	102.91790	35.00250	1.55590	7.01810	5.85710	HepG2	AKAP8L
RP11-438J1.1	ENSG00000272410.1	229.23060	69.81040	1.71520	12.79100	11.26140	HepG2	CIRBP
RP11-438J1.1	ENSG00000272410.1	67.23040	34.83170	0.94860	2.42550	1.79480	HepG2	CKAP4
RP11-438J1.1	ENSG00000272410.1	203.53730	308.01550	-0.59770	3.00220	2.28970	HepG2	CPSF6
RP11-438J1.1	ENSG00000272410.1	28.39540	73.07440	-1.36370	3.56580	2.87270	HepG2	DDX6
RP11-438J1.1	ENSG00000272410.1	172.13920	33.32990	2.36860	2.30980	1.68150	HepG2	DKC1
RP11-438J1.1	ENSG00000272410.1	24.14050	146.82960	-2.60460	2.75700	2.06500	HepG2	HNRNPC
RP11-438J1.1	ENSG00000272410.1	365.68900	188.98690	0.95220	2.28520	1.62900	HepG2	HNRNPF
RP11-438J1.1	ENSG00000272410.1	26.30970	73.57340	-1.48360	2.51390	1.84590	HepG2	HNRNPK
RP11-438J1.1	ENSG00000272410.1	342.18230	186.10150	0.87860	2.15610	1.51200	HepG2	IGF2BP1
RP11-438J1.1	ENSG00000272410.1	29.70210	69.31250	-1.22260	2.32980	1.43470	HepG2	IGF2BP3
RP11-438J1.1	ENSG00000272410.1	80.80180	31.84670	1.34310	2.65620	1.65460	HepG2	KIF1C
RP11-438J1.1	ENSG00000272410.1	26.36060	93.00000	-1.81880	3.42830	2.53820	HepG2	PRPF8
RP11-438J1.1	ENSG00000272410.1	448.33880	203.53360	1.13920	12.55420	11.28580	HepG2	RPLP0
RP11-438J1.1	ENSG00000272410.1	29.87010	92.00620	-1.62300	2.86820	2.06920	HepG2	RRP9
RP11-438J1.1	ENSG00000272410.1	41.98930	129.87730	-1.62910	1.94070	1.38500	HepG2	SAFB2
RP11-438J1.1	ENSG00000272410.1	524.66040	329.85900	0.66940	2.26490	1.62380	HepG2	SF3B1
RP11-438J1.1	ENSG00000272410.1	534.98180	265.46150	1.01090	5.15140	3.73310	HepG2	TBRG4
RP11-438J1.1	ENSG00000272410.1	21.31370	80.39070	-1.91520	3.23310	2.16090	HepG2	TFIP11
RP11-438J1.1	ENSG00000272410.1	464.40960	238.45030	0.96160	6.27000	5.34070	HepG2	U2AF1
RP11-438J1.1	ENSG00000272410.1	472.56900	304.10270	0.63590	3.76960	3.08780	HepG2	UTP3
RP11-438J1.1	ENSG00000272410.1	316.75580	227.75100	0.47580	2.51690	1.87090	HepG2	ZC3H8
RP11-438J1.1	ENSG00000272410.1	206.28490	71.92680	1.51990	5.37940	4.60790	K562	AQR
RP11-438J1.1	ENSG00000272410.1	7.28240	62.95560	-3.11190	3.37570	2.19050	K562	CSTF2
RP11-438J1.1	ENSG00000272410.1	453.37170	309.92310	0.54870	2.13250	1.54880	K562	DDX47
RP11-438J1.1	ENSG00000272410.1	127.55570	11.28010	3.49920	22.25590	19.69020	K562	EIF4A3
RP11-438J1.1	ENSG00000272410.1	61.02410	10.15560	2.58700	9.26260	7.02810	K562	EIF4B
RP11-438J1.1	ENSG00000272410.1	111.47500	11.73030	3.24830	2.07630	1.53780	K562	FXR1
RP11-438J1.1	ENSG00000272410.1	201.09610	99.88840	1.00940	4.95800	3.94850	K562	GRSF1
RP11-438J1.1	ENSG00000272410.1	0.00000	13.83360	-99999.99999	3.87980	2.71710	K562	PCBP2
RP11-438J1.1	ENSG00000272410.1	104.73020	205.03810	-0.96920	4.59050	3.38200	K562	PSIP1
RP11-438J1.1	ENSG00000272410.1	165.96700	94.72520	0.80900	3.23260	1.48930	K562	RBM17
RP11-438J1.1	ENSG00000272410.1	475.05570	247.99140	0.93770	9.19170	7.27440	K562	SAFB
RP11-438J1.1	ENSG00000272410.1	186.35900	45.94640	2.02000	6.83090	5.18250	K562	SUPV3L1
RP11-438J1.1	ENSG00000272410.1	511.00970	279.15770	0.87220	2.64300	1.84300	K562	SYNCRIP
RP11-438J1.1	ENSG00000272410.1	56.14910	14.98720	1.90540	5.25670	4.26500	K562	TARDBP
RP11-438J1.1	ENSG00000272410.1	297.78910	197.21650	0.59440	2.92800	1.96400	K562	TIAL1
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for RP11-438J1.1 is not available on ENCORE database.

2 RBPs can affect the splicing of RP11-438J1.1 :

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	2ndExonStart	2ndExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP	Bound by RBP
A5SS	RP11-438J1.1	ENSG00000272410.1	chr3	+	10320568	10320747			10320568	10320718	10320904	10321611	0.15700	0.00018	0.07727	longer	HepG2	LARP4
A5SS	RP11-438J1.1	ENSG00000272410.1	chr3	+	10320568	10320747			10320568	10320718	10320904	10321611	0.16900	0.00101	0.06798	longer	HepG2	SF3A3

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

RP11-438J1.1

General Information

Functions

Localization

Domains (AlphaFold: RP11-438J1.1)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for RP11-438J1.1 is not avaliable on ENCORE database.

23 proteins are bound to RP11-438J1.1 RNA:

eCLIP assay for RP11-438J1.1 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for RP11-438J1.1 is not available on ENCORE database.

37 RBPs can affect the gene expression of RP11-438J1.1 :

The Knockdown/knockout RNA-Seq assay for RP11-438J1.1 is not available on ENCORE database.

2 RBPs can affect the splicing of RP11-438J1.1 :

The Knockdown/knockout RNA-Seq assay for RP11-438J1.1 is not avaliable on ENCORE database.