RP11-349A22.5

General Information

Gene Name : RP11-349A22.5
Gene ID :
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: RP11-349A22.5)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for RP11-349A22.5 is not avaliable on ENCORE database.

Proteins bound to RNA

RP11-349A22.5 RNA is bound by 25 proteins.

eCLIP assay for RP11-349A22.5 is not avaliable on ENCORE database.

25 proteins are bound to RP11-349A22.5 RNA:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr14	58745017	58745085	-	intron-Distal	3.94715	6.08354	HepG2	ILF3
chr14	58740683	58740735	-	intron-Distal,intron-Proximal	3.59108	9.41803	HepG2	BCLAF1
chr14	58740687	58740716	-	intron-Distal,intron-Proximal	3.38364	8.46727	HepG2	AQR
chr14	58734661	58734787	-	intron-Distal	3.41482	6.67026	K562	KHSRP
chr14	58740687	58740735	-	intron-Distal,intron-Proximal	3.23110	11.11242	K562	EFTUD2
chr14	58762678	58762735	-	intron-Distal	4.75129	6.73684	K562	KHSRP
chr14	58752021	58752059	-	intron-Distal	4.75432	4.90095	K562	PTBP1
chr14	58740683	58740733	-	intron-Distal,intron-Proximal	4.09227	5.05356	HepG2	PRPF8
chr14	58751598	58751648	-	intron-Distal	3.32389	7.22235	HepG2	SUGP2
chr14	58740790	58740878	-	intron-Distal,intron-Proximal	4.11872	5.90528	HepG2	AQR
chr14	58758352	58758426	-	intron-Distal,intron-Proximal	4.78418	5.78736	K562	ZNF622
chr14	58751949	58752020	-	intron-Distal	4.63191	17.41639	HepG2	PTBP1
chr14	58734055	58734125	-	intron-Distal	3.86289	6.58004	HepG2	U2AF2
chr14	58758340	58758409	-	intron-Distal,intron-Proximal	3.16202	8.52682	HepG2	PPIG
chr14	58762791	58762847	-	intron-Distal	3.18171	5.82594	K562	KHSRP
chr14	58740687	58740734	-	intron-Distal,intron-Proximal	4.77042	6.68194	K562	U2AF1
chr14	58751807	58751869	-	intron-Distal	3.27076	3.57598	HepG2	MATR3
chr14	58740661	58740735	-	intron-Distal,intron-Proximal	4.23626	15.55509	K562	PRPF8
chr14	58740684	58740737	-	intron-Distal,intron-Proximal	5.31630	11.16668	K562	U2AF2
chr14	58764598	58764648	-	intron-Distal	4.26489	12.55284	HepG2	RBM22
chr14	58764591	58764667	-	intron-Distal	5.61936	7.24749	HepG2	EFTUD2
chr14	58764603	58764658	-	intron-Distal	3.17196	4.35521	HepG2	BUD13
chr14	58734141	58734238	-	intron-Distal	3.47176	3.90086	HepG2	KHSRP
chr14	58758289	58758353	-	intron-Distal,intron-Proximal	3.53364	4.88100	K562	AQR
chr14	58751947	58752074	-	intron-Distal	4.16957	12.62753	HepG2	MATR3
chr14	58740782	58740843	-	intron-Distal,intron-Proximal	5.11812	3.70131	HepG2	PRPF8
chr14	58740665	58740736	-	intron-Distal,intron-Proximal	4.52980	24.44851	HepG2	U2AF2
chr14	58758210	58758390	-	intron-Distal,intron-Proximal	3.43831	11.61753	K562	PRPF8
chr14	58758319	58758382	-	intron-Distal,intron-Proximal	7.10196	19.77792	HepG2	PRPF8
chr14	58747575	58747620	-	intron-Distal	3.52597	3.94088	HepG2	QKI
chr14	58751621	58751659	-	intron-Distal	4.89893	5.01910	HepG2	MATR3
chr14	58764428	58764555	-	intron-Distal	3.51595	5.31369	K562	PRPF8
chr14	58751214	58751302	-	intron-Distal	3.54483	9.76205	HepG2	SUGP2
chr14	58751760	58751807	-	intron-Distal	4.82850	5.01910	HepG2	MATR3
chr14	58736844	58736904	-	intron-Distal	3.87588	3.37631	K562	HNRNPL
chr14	58751869	58751947	-	intron-Distal	3.24006	3.99025	HepG2	MATR3
chr14	58732941	58732999	-	intron-Distal	3.44874	5.38533	K562	SAFB
chr14	58740582	58740641	-	intron-Distal,intron-Proximal	3.86822	8.25843	K562	PRPF8
chr14	58740685	58740736	-	intron-Distal,intron-Proximal	3.92924	7.10322	HepG2	BUD13
chr14	58734302	58734343	-	intron-Distal	4.29632	4.12401	HepG2	U2AF2
chr14	58751856	58751892	-	intron-Distal	3.02423	7.98949	HepG2	SUGP2
chr14	58759721	58759809	-	intron-Distal,intron-Proximal	3.52727	6.52138	HepG2	QKI
chr14	58755515	58755650	-	intron-Distal,intron-Proximal	3.01334	3.34630	K562	SAFB2
chr14	58762735	58762791	-	intron-Distal	3.78001	9.07651	K562	KHSRP
chr14	58733178	58733275	-	intron-Distal,intron-Proximal	3.03069	4.90021	HepG2	SAFB
chr14	58740677	58740734	-	intron-Distal,intron-Proximal	4.67769	10.10144	HepG2	PPIG
chr14	58751851	58751948	-	intron-Distal	5.22442	9.10501	K562	MATR3
chr14	58747586	58747674	-	intron-Distal	3.17609	4.67779	HepG2	SUGP2
chr14	58740665	58740735	-	intron-Distal,intron-Proximal	3.92184	6.10522	K562	GPKOW
chr14	58758349	58758411	-	intron-Distal,intron-Proximal	3.34987	4.59873	K562	UCHL5
chr14	58740668	58740738	-	intron-Distal,intron-Proximal	4.78793	7.17972	HepG2	SF3A3
chr14	58764759	58764840	-	intron-Distal,intron-Proximal	3.72539	7.42139	HepG2	NCBP2
chr14	58751948	58752076	-	intron-Distal	6.12011	19.79230	K562	MATR3
chr14	58764603	58764671	-	intron-Distal	4.11997	6.55514	HepG2	CDC40
chr14	58740670	58740735	-	intron-Distal,intron-Proximal	3.10981	9.81231	K562	BUD13
chr14	58764731	58764809	-	intron-Distal,intron-Proximal	3.49002	6.56546	K562	RBM15
chr14	58751944	58752021	-	intron-Distal	6.65799	20.82570	K562	PTBP1
chr14	58740672	58740736	-	intron-Distal,intron-Proximal	4.48485	5.10810	HepG2	U2AF1
chr14	58751814	58751856	-	intron-Distal	5.37930	10.55100	HepG2	SUGP2
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

eCLIP assay for RP11-349A22.5 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for RP11-349A22.5 is not available on ENCORE database.
80 RBPs can affect the levels of RP11-349A22.5.

The Knockdown/knockout RNA-Seq assay for RP11-349A22.5 is not available on ENCORE database.

80 RBPs can affect the gene expression of RP11-349A22.5 :

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
RP11-349A22.5	ENSG00000257621.3	639.01820	875.55570	-0.45430	2.62770	2.10890	HepG2	AKAP1
RP11-349A22.5	ENSG00000257621.3	853.69230	647.62190	0.39850	2.54100	1.64580	HepG2	BCCIP
RP11-349A22.5	ENSG00000257621.3	815.33530	1162.77050	-0.51210	3.48250	2.77880	HepG2	CELF1
RP11-349A22.5	ENSG00000257621.3	837.10160	626.83270	0.41720	3.38190	2.36640	HepG2	DDX24
RP11-349A22.5	ENSG00000257621.3	617.54440	838.77550	-0.44170	2.82050	2.18910	HepG2	DDX3X
RP11-349A22.5	ENSG00000257621.3	468.77630	720.38560	-0.61990	4.07460	3.33730	HepG2	DDX6
RP11-349A22.5	ENSG00000257621.3	696.42740	499.09930	0.48050	3.78810	2.65050	HepG2	DHX30
RP11-349A22.5	ENSG00000257621.3	1103.27730	786.34370	0.48850	6.67240	5.70850	HepG2	DKC1
RP11-349A22.5	ENSG00000257621.3	989.96100	692.66300	0.51510	3.95390	3.25310	HepG2	EIF2S1
RP11-349A22.5	ENSG00000257621.3	1342.01980	765.54130	0.80980	3.96930	3.20810	HepG2	EIF4A3
RP11-349A22.5	ENSG00000257621.3	1673.23140	1233.49730	0.43980	5.86400	4.72460	HepG2	EIF4G1
RP11-349A22.5	ENSG00000257621.3	1094.98560	750.98610	0.54400	5.31720	3.85110	HepG2	ESF1
RP11-349A22.5	ENSG00000257621.3	2097.20910	1280.90450	0.71120	18.59010	17.26300	HepG2	ETF1
RP11-349A22.5	ENSG00000257621.3	558.21200	803.22550	-0.52500	4.92080	3.81010	HepG2	EWSR1
RP11-349A22.5	ENSG00000257621.3	812.44050	573.12100	0.50330	3.71010	1.71400	HepG2	EXOSC9
RP11-349A22.5	ENSG00000257621.3	905.05170	454.94630	0.99220	11.12410	9.59310	HepG2	FUBP3
RP11-349A22.5	ENSG00000257621.3	1019.86170	716.43170	0.50940	3.83930	3.06050	HepG2	G3BP1
RP11-349A22.5	ENSG00000257621.3	1353.50360	760.44440	0.83170	10.59760	8.85320	HepG2	G3BP2
RP11-349A22.5	ENSG00000257621.3	1377.88200	957.64900	0.52480	4.29150	3.50590	HepG2	GPKOW
RP11-349A22.5	ENSG00000257621.3	705.69650	522.42360	0.43370	2.36890	1.76740	HepG2	HNRNPA1
RP11-349A22.5	ENSG00000257621.3	834.12550	581.10510	0.52140	4.33170	3.47910	HepG2	HNRNPC
RP11-349A22.5	ENSG00000257621.3	1609.83910	913.90100	0.81670	11.08170	9.92510	HepG2	HNRNPLL
RP11-349A22.5	ENSG00000257621.3	976.33050	728.27520	0.42280	2.61310	1.95510	HepG2	IGF2BP2
RP11-349A22.5	ENSG00000257621.3	815.93430	589.65390	0.46850	3.34030	2.54070	HepG2	ILF2
RP11-349A22.5	ENSG00000257621.3	1119.68360	732.44930	0.61220	4.48650	3.18110	HepG2	KHSRP
RP11-349A22.5	ENSG00000257621.3	1029.58580	772.46440	0.41440	2.04500	1.47730	HepG2	MAGOH
RP11-349A22.5	ENSG00000257621.3	1929.58190	810.33930	1.25160	12.11040	10.65030	HepG2	NSUN2
RP11-349A22.5	ENSG00000257621.3	550.85030	797.94690	-0.53460	2.28510	1.49310	HepG2	PABPC1
RP11-349A22.5	ENSG00000257621.3	959.99390	708.25310	0.43870	3.04430	2.28920	HepG2	PABPC4
RP11-349A22.5	ENSG00000257621.3	798.91130	571.38450	0.48350	5.46540	4.33040	HepG2	PARN
RP11-349A22.5	ENSG00000257621.3	953.88410	645.11580	0.56420	8.38410	7.42110	HepG2	PCBP1
RP11-349A22.5	ENSG00000257621.3	627.53800	514.87130	0.28540	1.93070	1.30690	HepG2	PPIL4
RP11-349A22.5	ENSG00000257621.3	848.04330	656.46980	0.36930	3.97150	3.34240	HepG2	PTBP1
RP11-349A22.5	ENSG00000257621.3	902.65550	1183.63320	-0.39100	3.36790	2.71920	HepG2	PUF60
RP11-349A22.5	ENSG00000257621.3	985.47310	1256.38700	-0.35040	3.29120	2.65590	HepG2	PUM1
RP11-349A22.5	ENSG00000257621.3	962.67840	1255.52640	-0.38320	3.77660	2.99810	HepG2	PUM2
RP11-349A22.5	ENSG00000257621.3	1121.32910	710.88710	0.65740	9.56680	8.50570	HepG2	QKI
RP11-349A22.5	ENSG00000257621.3	1321.38340	645.20820	1.03410	20.18810	18.48060	HepG2	RBM25
RP11-349A22.5	ENSG00000257621.3	981.53410	730.55440	0.42590	4.85010	4.16910	HepG2	NELFE
RP11-349A22.5	ENSG00000257621.3	1174.57860	680.47290	0.78740	16.02300	14.74160	HepG2	RECQL
RP11-349A22.5	ENSG00000257621.3	1284.21940	763.04710	0.75090	9.95190	8.79320	HepG2	RPLP0
RP11-349A22.5	ENSG00000257621.3	1092.70570	758.21080	0.52710	2.94780	1.97510	HepG2	RPS10
RP11-349A22.5	ENSG00000257621.3	1543.91930	876.20110	0.81720	7.57890	6.27300	HepG2	RPS3A
RP11-349A22.5	ENSG00000257621.3	1042.17280	683.39750	0.60870	9.47570	8.48190	HepG2	SF3B4
RP11-349A22.5	ENSG00000257621.3	976.69330	713.34850	0.45320	5.68480	5.06750	HepG2	SRSF1
RP11-349A22.5	ENSG00000257621.3	967.72650	1168.55520	-0.27210	2.60210	1.99090	HepG2	SRSF5
RP11-349A22.5	ENSG00000257621.3	832.78850	695.92640	0.25890	2.16880	1.54380	HepG2	SRSF7
RP11-349A22.5	ENSG00000257621.3	962.58440	580.37250	0.72980	13.92570	12.85740	HepG2	SRSF9
RP11-349A22.5	ENSG00000257621.3	1718.27230	1049.87170	0.71060	9.16480	8.33690	HepG2	SSB
RP11-349A22.5	ENSG00000257621.3	981.67780	1329.06350	-0.43710	2.18510	1.62040	HepG2	SUCLG1
RP11-349A22.5	ENSG00000257621.3	1215.17060	641.26740	0.92210	19.37240	18.08060	HepG2	TAF15
RP11-349A22.5	ENSG00000257621.3	1338.28320	890.73860	0.58720	5.20490	4.25530	HepG2	TARDBP
RP11-349A22.5	ENSG00000257621.3	1016.04500	589.15050	0.78620	5.01090	3.89550	HepG2	TIA1
RP11-349A22.5	ENSG00000257621.3	568.88870	374.49410	0.60310	4.83490	3.82550	HepG2	UCHL5
RP11-349A22.5	ENSG00000257621.3	683.21800	964.13870	-0.49690	6.64170	5.78210	HepG2	UTP3
RP11-349A22.5	ENSG00000257621.3	939.14020	623.99430	0.58970	5.39230	4.39020	HepG2	XRN2
RP11-349A22.5	ENSG00000257621.3	1101.02460	681.18310	0.69260	13.99950	12.68160	HepG2	ZC3H8
RP11-349A22.5	ENSG00000257621.3	1092.85960	771.17170	0.50290	3.11690	1.73460	HepG2	ZRANB2
RP11-349A22.5	ENSG00000257621.3	693.09160	910.55290	-0.39370	4.18050	3.50790	K562	AGGF1
RP11-349A22.5	ENSG00000257621.3	795.94950	1000.50330	-0.33000	2.45130	1.53530	K562	AKAP8
RP11-349A22.5	ENSG00000257621.3	625.37720	947.45760	-0.59930	6.22190	5.21460	K562	AKAP8L
RP11-349A22.5	ENSG00000257621.3	815.70600	994.08480	-0.28530	2.42060	1.57070	K562	ATP5C1
RP11-349A22.5	ENSG00000257621.3	583.83020	797.96740	-0.45080	3.19070	2.34680	K562	CPSF6
RP11-349A22.5	ENSG00000257621.3	1738.10780	1410.36920	0.30130	3.06810	2.04250	K562	CELF1
RP11-349A22.5	ENSG00000257621.3	1350.74850	1039.69700	0.37750	4.78780	3.96410	K562	DDX47
RP11-349A22.5	ENSG00000257621.3	389.48950	276.49970	0.49420	2.71440	1.39750	K562	DHX30
RP11-349A22.5	ENSG00000257621.3	829.45050	1019.61970	-0.29780	2.76980	1.89540	K562	DKC1
RP11-349A22.5	ENSG00000257621.3	380.57390	265.59440	0.51890	2.92720	1.54130	K562	DNAJC21
RP11-349A22.5	ENSG00000257621.3	879.67510	725.06900	0.27880	2.26460	1.60480	K562	EIF2S2
RP11-349A22.5	ENSG00000257621.3	1480.55950	1147.14200	0.36800	4.55040	3.35790	K562	EIF4G2
RP11-349A22.5	ENSG00000257621.3	315.70750	443.14460	-0.48920	3.19010	1.78290	K562	EWSR1
RP11-349A22.5	ENSG00000257621.3	505.29120	822.65040	-0.70320	3.53700	2.56780	K562	FIP1L1
RP11-349A22.5	ENSG00000257621.3	744.81730	564.38480	0.40010	2.06180	1.46410	K562	G3BP2
RP11-349A22.5	ENSG00000257621.3	668.95920	521.53880	0.35900	2.50190	1.48020	K562	HNRNPA1
RP11-349A22.5	ENSG00000257621.3	536.09200	405.52840	0.40260	2.46380	1.89670	K562	HNRNPC
RP11-349A22.5	ENSG00000257621.3	430.55580	577.51320	-0.42370	2.98970	2.06170	K562	HNRNPU
RP11-349A22.5	ENSG00000257621.3	377.52080	258.04280	0.54880	3.10150	1.51370	K562	ILF3
RP11-349A22.5	ENSG00000257621.3	759.97180	962.50790	-0.34090	2.44220	1.45360	K562	MAK16
RP11-349A22.5	ENSG00000257621.3	833.19610	638.61000	0.38360	3.86180	2.92070	K562	MTPAP
RP11-349A22.5	ENSG00000257621.3	1708.53180	1254.73180	0.44530	4.10750	2.27060	K562	NOL12
RP11-349A22.5	ENSG00000257621.3	293.06700	446.68660	-0.60800	3.72630	2.17570	K562	NONO
RP11-349A22.5	ENSG00000257621.3	488.05890	840.19200	-0.78370	2.23310	1.36350	K562	PABPN1
RP11-349A22.5	ENSG00000257621.3	549.33270	395.91660	0.47240	3.23880	1.67460	K562	PHF6
RP11-349A22.5	ENSG00000257621.3	625.82610	933.76610	-0.57730	2.66620	1.86470	K562	PPIG
RP11-349A22.5	ENSG00000257621.3	526.46010	363.59690	0.53390	3.80550	2.72030	K562	PSIP1
RP11-349A22.5	ENSG00000257621.3	1551.26750	1251.63530	0.30950	2.10250	1.39050	K562	PUF60
RP11-349A22.5	ENSG00000257621.3	1593.88300	1331.19190	0.25970	2.27060	1.31340	K562	PUM1
RP11-349A22.5	ENSG00000257621.3	583.77990	915.53070	-0.64920	5.54370	4.72980	K562	RBM15
RP11-349A22.5	ENSG00000257621.3	375.89570	587.34520	-0.64390	3.71260	2.71820	K562	SF3B4
RP11-349A22.5	ENSG00000257621.3	883.15680	669.44180	0.39960	4.74880	3.66640	K562	WDR43
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for RP11-349A22.5 is not available on ENCORE database.

4 RBPs can affect the splicing of RP11-349A22.5 :

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	2ndExonStart	2ndExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
SE	RP11-349A22.5	ENSG00000257621.3	chr14	-	58755435	58755531			58752449	58752474	58758352	58758440	0.24700	0.00211	0.09717	included	HepG2	NCBP2
SE	RP11-349A22.5	ENSG00000257621.3	chr14	-	58753357	58753545			58752303	58752474	58758352	58758425	0.37000	0.00169	0.05829	included	HepG2	HNRNPC
A3SS	RP11-349A22.5	ENSG00000257621.3	chr14	-	58758352	58758440			58758352	58758425	58759783	58759856	0.46600	0.00554	0.03162	longer	K562	AQR
MXE	RP11-349A22.5	ENSG00000257621.3	chr14	-	58740810	58740853	58752308	58752474	58740696	58740728	58758352	58758425	0.40900	0.00080	0.01650	1included	K562	SRSF1

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

RP11-349A22.5

General Information

Functions

Localization

Domains (AlphaFold: RP11-349A22.5)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for RP11-349A22.5 is not avaliable on ENCORE database.

25 proteins are bound to RP11-349A22.5 RNA:

eCLIP assay for RP11-349A22.5 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for RP11-349A22.5 is not available on ENCORE database.

80 RBPs can affect the gene expression of RP11-349A22.5 :

The Knockdown/knockout RNA-Seq assay for RP11-349A22.5 is not available on ENCORE database.

4 RBPs can affect the splicing of RP11-349A22.5 :

The Knockdown/knockout RNA-Seq assay for RP11-349A22.5 is not avaliable on ENCORE database.