RP11-1084J3.4

General Information

Gene Name : RP11-1084J3.4
Gene ID :
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: RP11-1084J3.4)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for RP11-1084J3.4 is not avaliable on ENCORE database.

Proteins bound to RNA

RP11-1084J3.4 RNA is bound by 10 proteins.

eCLIP assay for RP11-1084J3.4 is not avaliable on ENCORE database.

10 proteins are bound to RP11-1084J3.4 RNA:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr5	34023969	34024051	-	CDS,intron-Distal,intron-Proximal	4.72053	5.01842	HepG2	PRPF8
chr5	34035717	34035789	-	CDS,intron-Distal,intron-Proximal	4.84054	5.27173	HepG2	PRPF8
chr5	34024047	34024115	-	CDS,intron-Distal,intron-Proximal	4.20518	3.82843	HepG2	PPIG
chr5	34033436	34033548	-	CDS,intron-Distal,intron-Proximal	4.40339	4.16554	HepG2	PPIG
chr5	34024013	34024110	-	CDS,intron-Distal,intron-Proximal	3.58320	5.45876	HepG2	BCLAF1
chr5	34048431	34048506	-	intron-Distal	4.32905	3.30829	HepG2	CSTF2
chr5	34098836	34098929	-	intron-Distal	4.13523	3.97888	HepG2	HNRNPL
chr5	34083436	34083589	-	intron-Distal	3.60910	3.02234	K562	KHSRP
chr5	34082855	34082969	-	intron-Distal	3.40552	4.71462	HepG2	HNRNPL
chr5	34057414	34057537	-	intron-Distal	4.96887	7.07589	HepG2	HNRNPL
chr5	34072669	34072724	-	intron-Distal	3.62280	4.22415	K562	PTBP1
chr5	34056480	34056572	-	intron-Distal	4.26264	4.77636	HepG2	HNRNPL
chr5	34064578	34064657	-	intron-Distal	3.50291	3.92069	K562	LSM11
chr5	34032283	34032331	-	intron-Distal	4.65604	5.54528	HepG2	QKI
chr5	34050059	34050106	-	intron-Distal	3.29702	3.08145	HepG2	HLTF
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

eCLIP assay for RP11-1084J3.4 is not avaliable on ENCORE database.

Summary
DE Affected by

Diffrential Expression

The Knockdown/knockout assay for RP11-1084J3.4 is not available on ENCORE database.
57 RBPs can affect the levels of RP11-1084J3.4.

The Knockdown/knockout RNA-Seq assay for RP11-1084J3.4 is not available on ENCORE database.

57 RBPs can affect the gene expression of RP11-1084J3.4 :

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
RP11-1084J3.4	ENSG00000273294.1	93.52000	1.40380	6.05780	8.30590	6.69030	HepG2	ADAR
RP11-1084J3.4	ENSG00000273294.1	0.00000	57.11500	-99999.99999	18.62860	15.59670	HepG2	ATP5C1
RP11-1084J3.4	ENSG00000273294.1	36.55220	10.41990	1.81050	1.84390	1.34690	HepG2	BOP1
RP11-1084J3.4	ENSG00000273294.1	8.19490	44.41670	-2.43830	5.84960	2.87060	HepG2	CEBPZ
RP11-1084J3.4	ENSG00000273294.1	60.99590	29.72560	1.03690	2.19440	1.50120	HepG2	CIRBP
RP11-1084J3.4	ENSG00000273294.1	0.00000	52.12310	-99999.99999	17.00550	14.56680	HepG2	CPSF7
RP11-1084J3.4	ENSG00000273294.1	62.36150	1.43990	5.43650	16.55050	14.24410	HepG2	YBX3
RP11-1084J3.4	ENSG00000273294.1	207.95860	80.08790	1.37650	10.29850	9.00860	HepG2	DAZAP1
RP11-1084J3.4	ENSG00000273294.1	61.64290	1.44130	5.41840	2.47370	1.38310	HepG2	DDX1
RP11-1084J3.4	ENSG00000273294.1	83.05850	36.23130	1.19680	3.28570	2.61140	HepG2	DDX3X
RP11-1084J3.4	ENSG00000273294.1	37.54920	76.83250	-1.03290	2.36850	1.64670	HepG2	DDX55
RP11-1084J3.4	ENSG00000273294.1	24.17850	0.00000	99999.99990	7.62820	6.03300	HepG2	DDX5
RP11-1084J3.4	ENSG00000273294.1	115.39650	31.09280	1.89180	7.95990	6.96360	HepG2	DDX6
RP11-1084J3.4	ENSG00000273294.1	23.66160	1.36320	4.11740	5.56810	4.20570	HepG2	DHX30
RP11-1084J3.4	ENSG00000273294.1	8.11950	74.75110	-3.20260	12.11240	9.97670	HepG2	AGO1
RP11-1084J3.4	ENSG00000273294.1	116.41010	29.92070	1.95990	6.46820	5.58270	HepG2	EIF2S1
RP11-1084J3.4	ENSG00000273294.1	14.28920	48.01340	-1.74850	3.62000	2.28300	HepG2	EIF2S2
RP11-1084J3.4	ENSG00000273294.1	171.50880	33.08050	2.37410	2.34300	1.75290	HepG2	EIF4A3
RP11-1084J3.4	ENSG00000273294.1	131.02030	32.18050	2.02540	2.21570	1.59670	HepG2	EIF4B
RP11-1084J3.4	ENSG00000273294.1	5.19050	77.33060	-3.89710	16.12080	13.79570	HepG2	FASTKD2
RP11-1084J3.4	ENSG00000273294.1	1.54200	63.91300	-5.37320	13.97090	12.45090	HepG2	FIP1L1
RP11-1084J3.4	ENSG00000273294.1	123.50830	30.94410	1.99680	10.11800	8.88760	HepG2	G3BP1
RP11-1084J3.4	ENSG00000273294.1	29.16240	1.42660	4.35330	6.04790	5.14380	HepG2	HNRNPA1
RP11-1084J3.4	ENSG00000273294.1	85.68940	1.58720	5.75440	19.46760	17.79120	HepG2	HNRNPC
RP11-1084J3.4	ENSG00000273294.1	188.20730	31.27910	2.58900	3.69230	2.89500	HepG2	HNRNPK
RP11-1084J3.4	ENSG00000273294.1	26.71690	1.57670	4.08270	6.20960	5.33170	HepG2	HNRNPU
RP11-1084J3.4	ENSG00000273294.1	116.20140	11.59720	3.32470	23.63120	21.76440	HepG2	IGF2BP1
RP11-1084J3.4	ENSG00000273294.1	59.97690	1.61050	5.21870	3.38400	2.57940	HepG2	ILF2
RP11-1084J3.4	ENSG00000273294.1	7.95040	103.31780	-3.69990	2.84560	1.58120	HepG2	KRR1
RP11-1084J3.4	ENSG00000273294.1	15.58080	51.72480	-1.73110	2.01750	1.32180	HepG2	MSI2
RP11-1084J3.4	ENSG00000273294.1	137.60710	34.33360	2.00280	7.99320	6.94340	HepG2	NCBP2
RP11-1084J3.4	ENSG00000273294.1	16.73610	52.41990	-1.64720	2.99990	1.48810	HepG2	NOLC1
RP11-1084J3.4	ENSG00000273294.1	141.40890	30.60330	2.20800	13.06030	11.52010	HepG2	PABPC4
RP11-1084J3.4	ENSG00000273294.1	46.39920	1.40620	5.04410	2.35640	1.67110	HepG2	PPIL4
RP11-1084J3.4	ENSG00000273294.1	14.86130	50.10900	-1.75350	3.42390	1.49390	HepG2	RBM14
RP11-1084J3.4	ENSG00000273294.1	32.41750	86.88230	-1.42230	3.63730	2.49260	HepG2	RBM27
RP11-1084J3.4	ENSG00000273294.1	25.58720	1.40390	4.18780	6.13080	5.22950	HepG2	SAFB2
RP11-1084J3.4	ENSG00000273294.1	5.91920	54.37730	-3.19950	6.80340	2.74610	HepG2	SDAD1
RP11-1084J3.4	ENSG00000273294.1	120.18550	56.49230	1.08900	3.19750	1.47010	HepG2	SLTM
RP11-1084J3.4	ENSG00000273294.1	80.85170	1.63680	5.62620	10.70330	9.57090	HepG2	SMN1
RP11-1084J3.4	ENSG00000273294.1	66.15530	116.50990	-0.81650	2.78270	2.30840	HepG2	SRSF1
RP11-1084J3.4	ENSG00000273294.1	60.45560	11.56320	2.38620	8.07510	6.98890	HepG2	SRSF7
RP11-1084J3.4	ENSG00000273294.1	28.55350	76.48150	-1.42140	3.93730	3.15250	HepG2	SUPV3L1
RP11-1084J3.4	ENSG00000273294.1	44.42540	1.53070	4.85910	8.27940	7.49810	HepG2	TIAL1
RP11-1084J3.4	ENSG00000273294.1	57.84510	1.54580	5.22560	2.73220	2.17020	HepG2	TRIM56
RP11-1084J3.4	ENSG00000273294.1	150.04420	70.02290	1.09940	3.43090	2.30700	HepG2	UPF2
RP11-1084J3.4	ENSG00000273294.1	56.45410	15.01330	1.91070	2.31380	1.34160	HepG2	UTP18
RP11-1084J3.4	ENSG00000273294.1	152.92620	75.28780	1.02220	2.42730	1.74490	HepG2	XRN2
RP11-1084J3.4	ENSG00000273294.1	126.97730	22.86860	2.47300	6.91740	5.93390	HepG2	ZC3H8
RP11-1084J3.4	ENSG00000273294.1	12.51670	0.00000	99999.99990	4.01120	2.55330	K562	CCDC124
RP11-1084J3.4	ENSG00000273294.1	14.07870	0.89540	3.97470	2.70980	1.51230	K562	DDX21
RP11-1084J3.4	ENSG00000273294.1	21.79030	0.00000	99999.99990	2.93820	2.26790	K562	DDX47
RP11-1084J3.4	ENSG00000273294.1	9.53030	0.00000	99999.99990	2.69320	1.90690	K562	EIF3G
RP11-1084J3.4	ENSG00000273294.1	18.22810	1.16340	3.96960	2.05740	1.52080	K562	FXR1
RP11-1084J3.4	ENSG00000273294.1	30.56450	0.00000	99999.99990	10.18280	8.05170	K562	HNRNPL
RP11-1084J3.4	ENSG00000273294.1	15.97010	0.00000	99999.99990	4.63730	2.35300	K562	SLTM
RP11-1084J3.4	ENSG00000273294.1	16.27410	1.51070	3.42920	3.34540	2.56570	K562	TARDBP
RP11-1084J3.4	ENSG00000273294.1	15.25010	1.45650	3.38820	3.01630	2.15440	K562	TIA1
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

RP11-1084J3.4

General Information

Functions

Localization

Domains (AlphaFold: RP11-1084J3.4)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for RP11-1084J3.4 is not avaliable on ENCORE database.

10 proteins are bound to RP11-1084J3.4 RNA:

eCLIP assay for RP11-1084J3.4 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for RP11-1084J3.4 is not available on ENCORE database.

57 RBPs can affect the gene expression of RP11-1084J3.4 :

The Knockdown/knockout RNA-Seq assay for RP11-1084J3.4 is not available on ENCORE database.

No RBPs affect the alternative splcing events of RP11-1084J3.4 on ENCORE database.

The Knockdown/knockout RNA-Seq assay for RP11-1084J3.4 is not avaliable on ENCORE database.