RNF2

General Information

Gene Name       : RNF2
Gene ID             : ENSG00000121481.10
Essential Gene : No

Functions

Localization

Domains (AlphaFold: RNF2)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878RNF2ENSG00000121481.1021.8418.1319.98ENCSR000AEF
HepG2RNF2ENSG00000121481.1019.8320.0519.94ENCSR985KAT
K562RNF2ENSG00000121481.1035.9235.8235.87ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for RNF2 is not avaliable on ENCORE database.



Proteins bound to RNA
  • RNF2 RNA is bound by 20 proteins.  







eCLIP assay for RNF2 is not avaliable on ENCORE database.





20 proteins are bound to RNF2 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr1185070834185070881+3'-UTR4.4279314.36548K562PUM2
chr1185069756185069806+3'-UTR4.376747.76684K562FAM120A
chr1185070051185070126+3'-UTR3.2720610.61538K562FAM120A
chr1185069685185069740+3'-UTR4.3173212.15663K562FAM120A
chr1185069500185069586+3'-UTR3.162303.31456K562TIA1
chr1185071085185071184+3'-UTR3.843567.91182K562FAM120A
chr1185070028185070107+3'-UTR4.560966.05696K562IGF2BP1
chr1185069841185069880+3'-UTR5.496287.16877K562FAM120A
chr1185071054185071134+3'-UTR3.8777420.08853K562PUM2
chr1185070206185070298+3'-UTR3.829968.96355K562FAM120A
chr1185014718185014781+5'-UTR4.565684.09791K562IGF2BP2
chr1185014647185014781+5'-UTR4.0253112.59285K562DDX3X
chr1185015248185015326+5'-UTR,intron-Distal4.803436.87697K562NONO
chr1185062297185062406+CDS,intron-Distal5.123916.81022K562IGF2BP1
chr1185069054185069128+CDS,intron-Proximal4.964656.01989HepG2PRPF8
chr1185067250185067388+CDS3.109186.38612K562YBX3
chr1185062281185062296+CDS,intron-Distal3.160866.00087K562YBX3
chr1185060791185060872+CDS,intron-Proximal3.346366.98787K562YBX3
chr1185014851185014938+intron-Distal,intron-Proximal4.183026.47963K562DDX51
chr1185014844185014958+intron-Distal,intron-Proximal3.323875.31614K562XRN2
chr1185023209185023288+intron-Distal4.533735.62460K562CSTF2T
chr1185034582185034688+intron-Distal4.344405.85945K562LSM11
chr1185014874185014946+intron-Distal,intron-Proximal4.113814.75435K562EFTUD2
chr1185014856185014944+intron-Distal,intron-Proximal4.299665.11005HepG2PRPF4
chr1185015473185015591+intron-Distal,intron-Proximal3.288853.50045HepG2SFPQ
chr1185014892185014961+intron-Distal3.347433.20886K562PRPF8
chr1185061272185061349+intron-Distal3.796763.97268K562PTBP1
chr1185014877185014952+intron-Distal,intron-Proximal4.5853411.43854K562NONO
chr1185035000185035042+intron-Distal3.386923.80927K562LSM11
chr1185032873185032983+intron-Distal4.306294.75572K562MATR3
chr1185035549185035668+intron-Distal4.122804.22415K562PTBP1
chr1185014864185014950+intron-Distal,intron-Proximal3.956739.33622K562TIA1
chr1185015535185015582+intron-Distal3.472133.54602K562TIA1
chr1185014880185014954+intron-Distal,intron-Proximal3.080936.68270K562CSTF2T
chr1185015001185015070+intron-Distal3.935646.88653K562CSTF2T
chr1185046395185046487+intron-Distal3.835835.12778HepG2PCBP2
chr1185015459185015548+intron-Distal,intron-Proximal3.706425.81451K562CSTF2T
chr1185015002185015062+intron-Distal4.620644.96496K562NONO
chr1185014874185014955+intron-Distal,intron-Proximal4.053083.40229HepG2CSTF2T
chr1185045127185045236+intron-Distal4.249744.72162K562KHSRP
chr1185014894185014950+intron-Distal3.288853.50045HepG2SFPQ
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for RNF2 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for RNF2 is not available on ENCORE database.

  • 64 RBPs can affect the levels of RNF2.  








The Knockdown/knockout RNA-Seq assay for RNF2 is not available on ENCORE database.





64 RBPs can affect the gene expression of RNF2 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
RNF2ENSG00000121481.6204.43050444.87960-1.1218011.242209.41530HepG2ADAR
RNF2ENSG00000121481.6257.76940407.60150-0.661103.441102.39760HepG2BCCIP
RNF2ENSG00000121481.6746.19440541.861300.461503.931103.03470HepG2CALR
RNF2ENSG00000121481.6302.34460462.96290-0.614702.817902.04560HepG2CNOT7
RNF2ENSG00000121481.6155.20890251.78510-0.698003.493302.29730HepG2CSTF2
RNF2ENSG00000121481.6475.64390604.40520-0.345602.805802.05900HepG2DAZAP1
RNF2ENSG00000121481.61025.89760646.824700.665303.131202.09230HepG2DDX59
RNF2ENSG00000121481.6283.58590466.10030-0.716906.979505.99740HepG2DKC1
RNF2ENSG00000121481.6349.82970444.01090-0.343902.445201.82620HepG2DNAJC2
RNF2ENSG00000121481.6288.08570659.46000-1.1948010.487609.26430HepG2EIF4A3
RNF2ENSG00000121481.6262.44670617.14230-1.2336010.838109.56580HepG2G3BP1
RNF2ENSG00000121481.6338.45000452.26810-0.418202.325801.72900HepG2HNRNPA1
RNF2ENSG00000121481.6356.11050503.06140-0.498403.110102.38030HepG2HNRNPC
RNF2ENSG00000121481.6406.87110624.65690-0.618504.714303.82420HepG2HNRNPK
RNF2ENSG00000121481.6343.81180464.62060-0.434403.158202.38830HepG2IGF2BP1
RNF2ENSG00000121481.6385.70420510.46400-0.404303.585402.76100HepG2ILF2
RNF2ENSG00000121481.6473.45950866.82920-0.872507.061905.72370HepG2LARP4
RNF2ENSG00000121481.6446.14220665.39060-0.576704.055103.26290HepG2MAGOH
RNF2ENSG00000121481.6520.67800684.93830-0.395602.112101.55570HepG2NCBP2
RNF2ENSG00000121481.6370.44850494.65680-0.417203.145402.24770HepG2PARN
RNF2ENSG00000121481.6434.90640620.45110-0.512605.119204.42280HepG2PTBP1
RNF2ENSG00000121481.6858.41310606.890900.500105.068404.17460HepG2PUM2
RNF2ENSG00000121481.6826.68860672.035000.298702.005901.46090HepG2QKI
RNF2ENSG00000121481.6317.08440659.99570-1.0576015.9962014.95900HepG2RBM22
RNF2ENSG00000121481.6530.15840690.53020-0.381303.120602.55260HepG2NELFE
RNF2ENSG00000121481.6458.40200643.08470-0.488404.804904.02190HepG2RECQL
RNF2ENSG00000121481.6332.63010464.86730-0.482902.259701.53550HepG2RPS3A
RNF2ENSG00000121481.6313.23390445.03860-0.506704.216503.45000HepG2SAFB2
RNF2ENSG00000121481.6510.13320646.02960-0.340702.657502.07580HepG2SF3B4
RNF2ENSG00000121481.6370.67100518.99350-0.485604.655103.85690HepG2SMN1
RNF2ENSG00000121481.6582.24880745.43790-0.356503.102402.58210HepG2SRFBP1
RNF2ENSG00000121481.6318.09810417.47190-0.392202.230501.38210HepG2SUPT6H
RNF2ENSG00000121481.6410.26050606.01080-0.562805.534704.78880HepG2TAF15
RNF2ENSG00000121481.6276.84710485.59870-0.810708.228207.44920HepG2TIAL1
RNF2ENSG00000121481.6359.20760489.92660-0.447703.761703.12620HepG2TRIM56
RNF2ENSG00000121481.6754.83370528.929100.513003.465402.76740HepG2U2AF1
RNF2ENSG00000121481.6112.23590235.67720-1.070306.747605.54940HepG2UCHL5
RNF2ENSG00000121481.6797.82880580.625900.458405.148804.37450HepG2UTP3
RNF2ENSG00000121481.6227.89800392.72250-0.785104.857803.90560HepG2XRN2
RNF2ENSG00000121481.6539.14410661.42270-0.294902.491901.96470HepG2ZNF622
RNF2ENSG00000121481.62868.285101473.316300.9610038.0253035.98210K562AGGF1
RNF2ENSG00000121481.62199.599901618.991300.442002.743201.76670K562AKAP8
RNF2ENSG00000121481.62325.717601533.062100.601208.559407.34680K562AKAP8L
RNF2ENSG00000121481.61878.436201608.569500.223702.142001.34540K562ATP5C1
RNF2ENSG00000121481.61513.866501209.198900.324102.219901.44500K562BOP1
RNF2ENSG00000121481.62169.311501728.604000.327502.788101.31960K562DDX19B
RNF2ENSG00000121481.62095.455301649.623700.345004.824903.61710K562DKC1
RNF2ENSG00000121481.6892.764801071.80550-0.263702.220001.56500K562EIF2S2
RNF2ENSG00000121481.6697.71180947.36390-0.441302.907402.06680K562EIF4A3
RNF2ENSG00000121481.61366.96320933.978100.549404.981303.39260K562FKBP4
RNF2ENSG00000121481.6824.69980651.556900.339902.776801.43470K562FUS
RNF2ENSG00000121481.6882.966701075.64850-0.284801.956101.44290K562HNRNPC
RNF2ENSG00000121481.61430.689601162.650100.299202.638801.76610K562HNRNPU
RNF2ENSG00000121481.62580.617001626.928000.665503.854502.85780K562KIF1C
RNF2ENSG00000121481.6904.159801157.88070-0.356803.002302.12640K562MAGOH
RNF2ENSG00000121481.62154.838301557.398000.468305.200803.56490K562MAK16
RNF2ENSG00000121481.62596.758901822.575000.510607.069605.48970K562MBNL1
RNF2ENSG00000121481.62046.145401277.496100.679502.876201.97420K562NAA15
RNF2ENSG00000121481.6637.01520964.44110-0.598405.786604.40610K562PSIP1
RNF2ENSG00000121481.6697.608501124.94610-0.689409.851708.65360K562PTBP1
RNF2ENSG00000121481.63079.945001520.307501.0184021.2213019.74510K562PUS1
RNF2ENSG00000121481.62705.657901481.368100.8689024.2339022.40360K562RBM15
RNF2ENSG00000121481.6808.088901078.74410-0.416803.481302.53290K562RBM22
RNF2ENSG00000121481.6699.67690879.97330-0.330802.499101.56070K562RCC2
RNF2ENSG00000121481.6917.628201310.31540-0.513903.980202.75150K562RPS3
RNF2ENSG00000121481.61147.54770766.601300.581904.127302.49950K562RRP9
RNF2ENSG00000121481.6619.68700834.18640-0.428803.163102.04820K562SRFBP1
RNF2ENSG00000121481.6844.961301102.81090-0.384203.415102.63470K562SRSF1
RNF2ENSG00000121481.6940.609701264.98980-0.427504.050402.74210K562SRSF4
RNF2ENSG00000121481.6864.293401076.63760-0.316902.580401.79320K562TIA1
RNF2ENSG00000121481.61499.590501300.422500.205502.075901.33510K562WDR43
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for RNF2 is not available on ENCORE database.





6 RBPs can affect the splicing of RNF2 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SERNF2ENSG00000121481.6chr1+185062192185062408185060710185060871185067203185067476-0.172000.000000.00000excludedK562SRSF1
SERNF2ENSG00000121481.6chr1+185062192185062408185060696185060871185067203185067476-0.071000.001650.03130excludedHepG2U2AF1
SERNF2ENSG00000121481.6chr1+1850407111850408281850146671850147811850566831850567720.053000.000000.00075includedK562PUM1
SERNF2ENSG00000121481.6chr1+185062192185062408185060710185060871185067203185067476-0.075000.000990.08625excludedHepG2DDX59
SERNF2ENSG00000121481.6chr1+1850407111850408281850146671850147811850566831850567720.057000.000020.00616includedK562HNRNPM
SERNF2ENSG00000121481.6chr1+185062192185062408185060710185060871185067203185067476-0.113000.001210.02987excludedHepG2SRSF1
SERNF2ENSG00000121481.6chr1+185062192185062408185060710185060871185067203185067476-0.101000.000270.01080excludedHepG2SF3A3

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for RNF2 is not avaliable on ENCORE database.