RNF115

General Information

Gene Name       : RNF115
Gene ID             : ENSG00000265491.4
Essential Gene : No

Functions

Localization

Domains (AlphaFold: RNF115)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878RNF115ENSG00000265491.411.5310.5611.04ENCSR000AEF
HepG2RNF115ENSG00000265491.44.746.565.65ENCSR985KAT
K562RNF115ENSG00000265491.46.096.636.36ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for RNF115 is not avaliable on ENCORE database.



Proteins bound to RNA
  • RNF115 RNA is bound by 14 proteins.  







eCLIP assay for RNF115 is not avaliable on ENCORE database.





14 proteins are bound to RNF115 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr1145684575145684650+3'-UTR,CDS,intron-Proximal3.031413.46866HepG2U2AF2
chr1145682067145682132+3'-UTR,CDS,intron-Proximal4.176803.86479HepG2PRPF8
chr1145682091145682171+3'-UTR,CDS,intron-Proximal3.234653.47285K562PRPF8
chr1145687009145687097+3'-UTR,CDS,intron-Proximal3.930533.79347HepG2GRWD1
chr1145650482145650532+3'-UTR,CDS,intron-Proximal3.994154.30063K562U2AF2
chr1145650476145650541+3'-UTR,CDS,intron-Proximal4.215595.63851K562SF3B4
chr1145683641145683738+3'-UTR,CDS,intron-Proximal3.325643.26275K562BUD13
chr1145611184145611242+5'-UTR,CDS4.473754.66990HepG2DDX3X
chr1145611037145611123+5'-UTR4.280863.15006K562RBM15
chr1145646148145646211+CDS,intron-Proximal3.303964.48980K562PRPF8
chr1145683683145683757+intron-Distal,intron-Proximal3.554953.76553K562PRPF8
chr1145656237145656300+intron-Distal4.114454.24565HepG2HNRNPL
chr1145649454145649530+intron-Distal4.566604.80399K562EXOSC5
chr1145662077145662136+intron-Distal3.734283.19638K562SAFB2
chr1145669192145669357+intron-Distal3.002123.98838K562ILF3
chr1145639805145639926+intron-Distal5.348244.96472K562LSM11
chr1145661623145661673+intron-Distal3.519655.95283K562SAFB
chr1145683652145683735+intron-Proximal4.681374.48002K562AQR
chr1145650413145650474+intron-Proximal3.759783.05889HepG2SF3B4
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for RNF115 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for RNF115 is not available on ENCORE database.

  • 52 RBPs can affect the levels of RNF115.  








The Knockdown/knockout RNA-Seq assay for RNF115 is not available on ENCORE database.





52 RBPs can affect the gene expression of RNF115 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
RNF115ENSG00000121848.9935.27980603.769900.631304.663103.99510HepG2AKAP1
RNF115ENSG00000121848.9924.55450754.380300.293402.649901.97680HepG2AUH
RNF115ENSG00000121848.9769.55810615.171400.322902.264101.56150HepG2CALR
RNF115ENSG00000121848.9414.59270516.47490-0.317002.053101.46810HepG2CKAP4
RNF115ENSG00000121848.9645.79620441.565800.548402.840802.15560HepG2DDX21
RNF115ENSG00000121848.9748.30920578.338800.371602.041201.49500HepG2DDX3X
RNF115ENSG00000121848.9685.39250527.761000.376902.003201.45640HepG2EIF4A3
RNF115ENSG00000121848.9749.18950513.907800.543702.948702.23950HepG2EIF4B
RNF115ENSG00000121848.9673.32180504.805700.415503.090902.21070HepG2EWSR1
RNF115ENSG00000121848.9908.04690661.002400.458003.117602.30550HepG2FIP1L1
RNF115ENSG00000121848.9447.68970657.26990-0.554006.161205.14830HepG2HNRNPF
RNF115ENSG00000121848.9326.88260461.46430-0.497402.181201.63620HepG2HNRNPU
RNF115ENSG00000121848.9520.62510647.22260-0.314002.070501.43790HepG2IGF2BP1
RNF115ENSG00000121848.9779.33060471.289100.725502.295001.40610HepG2IGF2BP3
RNF115ENSG00000121848.9683.31220532.767700.358901.896401.34790HepG2MAGOH
RNF115ENSG00000121848.9761.58660535.734500.507403.139802.47070HepG2MATR3
RNF115ENSG00000121848.9757.50050462.241100.712509.668608.76800HepG2PTBP1
RNF115ENSG00000121848.9815.40140526.144200.632003.166302.41600HepG2RAVER1
RNF115ENSG00000121848.9930.35700723.896800.361903.348902.79430HepG2RBM22
RNF115ENSG00000121848.9736.13420454.352800.696107.393106.33560HepG2RBM25
RNF115ENSG00000121848.9650.77750514.436800.339102.430901.91820HepG2NELFE
RNF115ENSG00000121848.9304.64050410.93620-0.431801.859501.31450HepG2SAFB2
RNF115ENSG00000121848.9920.27170604.475100.606304.095103.26720HepG2SF3A3
RNF115ENSG00000121848.9633.36150481.267500.396103.128502.50520HepG2SF3B4
RNF115ENSG00000121848.9495.08150648.08280-0.388503.868403.06000HepG2SLBP
RNF115ENSG00000121848.91470.11730817.630800.8463022.7088021.63440HepG2SRFBP1
RNF115ENSG00000121848.9937.39770502.333000.8999016.6225015.66980HepG2SRSF1
RNF115ENSG00000121848.9444.44710645.74780-0.539006.055005.08810HepG2SRSF7
RNF115ENSG00000121848.9549.06070408.669400.425903.630303.01690HepG2SRSF9
RNF115ENSG00000121848.9790.63740461.319300.777206.611905.63580HepG2SUPV3L1
RNF115ENSG00000121848.9635.78190451.499600.493704.293803.61890HepG2TAF15
RNF115ENSG00000121848.9553.50510414.884500.415802.790901.95130HepG2TIA1
RNF115ENSG00000121848.9565.43150448.283000.334802.157401.70490HepG2TIAL1
RNF115ENSG00000121848.9915.66040484.033200.919602.640601.67600HepG2U2AF2
RNF115ENSG00000121848.9383.36140272.524400.492202.749601.99220HepG2UCHL5
RNF115ENSG00000121848.9768.50130517.563000.570207.075606.19270HepG2UTP3
RNF115ENSG00000121848.91663.663301375.530700.274301.995601.48200K562AQR
RNF115ENSG00000121848.92412.855201232.107300.9695034.3765032.34680K562DDX47
RNF115ENSG00000121848.9844.15260423.924600.993606.978505.33030K562EIF3A
RNF115ENSG00000121848.9901.88930739.170800.286902.333001.59910K562EIF3G
RNF115ENSG00000121848.91779.516601481.212500.264602.886101.92820K562EIF4G2
RNF115ENSG00000121848.9791.45440586.125100.433202.859301.71160K562FKBP4
RNF115ENSG00000121848.91234.74780949.371300.379102.838801.97240K562FMR1
RNF115ENSG00000121848.9987.16030675.579500.547105.705104.87880K562HNRNPC
RNF115ENSG00000121848.91963.926101466.516500.421203.858402.92170K562HSPD1
RNF115ENSG00000121848.92047.978401616.114800.341602.930002.09050K562PUF60
RNF115ENSG00000121848.91652.443201369.975100.270401.809401.35170K562PUS1
RNF115ENSG00000121848.9740.30580936.26710-0.338802.355701.58570K562RBM22
RNF115ENSG00000121848.9980.31600773.329100.342102.597401.31820K562RBM25
RNF115ENSG00000121848.91197.78740669.212000.839709.217107.70930K562RPS19
RNF115ENSG00000121848.91376.21010918.254100.583603.075201.39430K562RPS3A
RNF115ENSG00000121848.9924.19630671.741600.460202.613801.32570K562RRP9
RNF115ENSG00000121848.9768.82030968.58600-0.333202.171301.53940K562TARDBP
RNF115ENSG00000121848.91008.36880816.251800.304802.405301.65600K562U2AF2
RNF115ENSG00000121848.91297.48300949.374500.450607.360406.04240K562WDR43
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for RNF115 is not available on ENCORE database.





6 RBPs can affect the splicing of RNF115 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SERNF115ENSG00000121848.9chr1+145646278145646469145646114145646173145650482145650540-0.072000.000600.00916excludedHepG2U2AF2
SERNF115ENSG00000121848.9chr1+145684584145684678145681987145682094145686975145687091-0.080000.000250.00379excludedK562AQR
SERNF115ENSG00000121848.9chr1+145646278145646469145646114145646173145650482145650540-0.090000.000070.01983excludedK562DROSHA
SERNF115ENSG00000121848.9chr1+1456462781456464691456461141456461731456504821456505400.072000.000090.04569includedK562BUD13
SERNF115ENSG00000121848.9chr1+1456462781456464691456461141456461731456504821456505400.129000.000390.01798includedK562TARDBP
SERNF115ENSG00000121848.9chr1+145683574145683647145682022145682094145684584145684678-0.148000.002180.04899excludedK562RBM15
MXERNF115ENSG00000121848.9chr1+145646278145646469145648015145648067145646114145646173145650482145650540-0.421000.002710.036492includedK562DROSHA
MXERNF115ENSG00000121848.9chr1+1456819721456820941456845841456846781456631581456633671456869751456870910.058000.000040.000511includedK562AQR
MXERNF115ENSG00000121848.9chr1+1456819081456820941456845841456846781456631581456633671456869751456870910.054000.000040.000531includedK562AQR
MXERNF115ENSG00000121848.9chr1+1456819871456820941456845841456846781456631581456633671456869751456870910.070000.000000.000041includedK562AQR

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for RNF115 is not avaliable on ENCORE database.