The Knockdown/knockout RNA-Seq assay for PTPRA is not available on ENCORE database.
59 RBPs can affect the gene expression of PTPRA :
Gene Name | Gene ID | KDMean | CNMean | log2(fold change) * | -log(pval) ** | -log(padj) ** | Cell Line | Affected by RBP | Bound by RBP |
PTPRA | ENSG00000132670.16 | 3221.42460 | 4149.81990 | -0.36530 | 2.96380 | 1.98630 | HepG2 | ABCF1 | |
PTPRA | ENSG00000132670.16 | 5535.95120 | 4194.66360 | 0.40020 | 3.07390 | 2.51710 | HepG2 | AKAP1 | |
PTPRA | ENSG00000132670.16 | 2190.01310 | 2767.40240 | -0.33760 | 5.53420 | 4.48340 | HepG2 | AKAP8L | |
PTPRA | ENSG00000132670.16 | 3373.65500 | 4209.55280 | -0.31940 | 2.97260 | 2.35500 | HepG2 | BOP1 | |
PTPRA | ENSG00000132670.16 | 4436.29440 | 3768.94230 | 0.23510 | 2.31520 | 1.60480 | HepG2 | CALR | |
PTPRA | ENSG00000132670.16 | 2279.74580 | 2753.84920 | -0.27260 | 4.80860 | 3.97800 | HepG2 | CKAP4 | |
PTPRA | ENSG00000132670.16 | 1349.95220 | 2529.35120 | -0.90590 | 7.95060 | 6.66440 | HepG2 | CNOT7 | |
PTPRA | ENSG00000132670.16 | 4245.10500 | 3713.17560 | 0.19300 | 2.22190 | 1.63520 | HepG2 | CELF1 | |
PTPRA | ENSG00000132670.16 | 3551.65430 | 3992.54150 | -0.16880 | 2.45640 | 1.75230 | HepG2 | DAZAP1 | |
PTPRA | ENSG00000132670.16 | 2312.96800 | 2754.28870 | -0.25190 | 2.02230 | 1.43170 | HepG2 | DDX21 | |
PTPRA | ENSG00000132670.16 | 2613.47920 | 3451.92780 | -0.40140 | 2.97650 | 2.33800 | HepG2 | DDX6 | |
PTPRA | ENSG00000132670.16 | 3058.49550 | 2629.86770 | 0.21770 | 2.37510 | 1.71760 | HepG2 | DNAJC21 | |
PTPRA | ENSG00000132670.16 | 2047.84310 | 2606.78040 | -0.34820 | 7.27230 | 6.28450 | HepG2 | DNAJC2 | |
PTPRA | ENSG00000132670.16 | 2755.42060 | 3318.05270 | -0.26810 | 1.81400 | 1.32170 | HepG2 | EIF2S1 | |
PTPRA | ENSG00000132670.16 | 2568.05200 | 3666.65970 | -0.51380 | 4.60700 | 3.78390 | HepG2 | EIF4A3 | |
PTPRA | ENSG00000132670.16 | 3488.29930 | 3938.91640 | -0.17530 | 2.04450 | 1.30610 | HepG2 | EIF4G1 | |
PTPRA | ENSG00000132670.16 | 5577.46640 | 4190.33660 | 0.41240 | 3.37120 | 2.52890 | HepG2 | FIP1L1 | |
PTPRA | ENSG00000132670.16 | 2090.58550 | 2655.06400 | -0.34480 | 3.51510 | 2.79760 | HepG2 | HNRNPA1 | |
PTPRA | ENSG00000132670.16 | 2384.24500 | 3636.88950 | -0.60920 | 23.48500 | 21.72210 | HepG2 | HNRNPL | |
PTPRA | ENSG00000132670.16 | 4152.69100 | 2933.78390 | 0.50120 | 13.74210 | 12.47760 | HepG2 | HNRNPU | |
PTPRA | ENSG00000132670.16 | 2941.15130 | 3631.29870 | -0.30410 | 3.35230 | 2.56240 | HepG2 | IGF2BP1 | |
PTPRA | ENSG00000132670.16 | 2636.93950 | 2996.75550 | -0.18450 | 2.77820 | 2.04410 | HepG2 | ILF2 | |
PTPRA | ENSG00000132670.16 | 2266.42920 | 3701.34060 | -0.70760 | 9.30190 | 8.11340 | HepG2 | MAGOH | |
PTPRA | ENSG00000132670.16 | 2337.86970 | 3721.96870 | -0.67090 | 7.60540 | 6.59870 | HepG2 | MATR3 | |
PTPRA | ENSG00000132670.16 | 3716.40850 | 2847.79660 | 0.38400 | 4.38420 | 2.85430 | HepG2 | NAA15 | |
PTPRA | ENSG00000132670.16 | 2280.98040 | 3809.57040 | -0.74000 | 9.78200 | 8.63300 | HepG2 | NCBP2 | |
PTPRA | ENSG00000132670.16 | 2459.68210 | 3392.34250 | -0.46380 | 4.32450 | 3.43520 | HepG2 | PABPC4 | |
PTPRA | ENSG00000132670.16 | 3334.39930 | 2903.88750 | 0.19930 | 2.40310 | 1.60980 | HepG2 | PARN | |
PTPRA | ENSG00000132670.16 | 2785.66040 | 3557.02890 | -0.35270 | 6.58040 | 5.70560 | HepG2 | PCBP1 | |
PTPRA | ENSG00000132670.16 | 4340.37400 | 3306.13710 | 0.39260 | 8.06250 | 6.83250 | HepG2 | PRPF4 | |
PTPRA | ENSG00000132670.16 | 2930.31260 | 3779.21910 | -0.36700 | 4.11690 | 3.40620 | HepG2 | PUF60 | |
PTPRA | ENSG00000132670.16 | 3239.33250 | 2805.65100 | 0.20730 | 2.91330 | 2.28500 | HepG2 | PUS1 | |
PTPRA | ENSG00000132670.16 | 3205.72470 | 3919.81390 | -0.29010 | 3.57860 | 2.88120 | HepG2 | QKI | |
PTPRA | ENSG00000132670.16 | 5810.31670 | 4557.36660 | 0.35030 | 5.05380 | 3.93840 | HepG2 | RBM15 | |
PTPRA | ENSG00000132670.16 | 3215.12950 | 3729.07920 | -0.21390 | 2.32100 | 1.83540 | HepG2 | RBM22 | |
PTPRA | ENSG00000132670.16 | 2793.00420 | 3557.55710 | -0.34910 | 3.91160 | 3.12040 | HepG2 | RBM25 | |
PTPRA | ENSG00000132670.16 | 1976.36480 | 2567.89900 | -0.37770 | 2.75180 | 1.69340 | HepG2 | RCC2 | |
PTPRA | ENSG00000132670.16 | 3287.77770 | 3751.74930 | -0.19050 | 2.30110 | 1.73220 | HepG2 | RECQL | |
PTPRA | ENSG00000132670.16 | 2407.26480 | 2916.43730 | -0.27680 | 2.07670 | 1.37730 | HepG2 | RPS2 | |
PTPRA | ENSG00000132670.16 | 3242.44600 | 3768.20370 | -0.21680 | 2.78040 | 2.18720 | HepG2 | SF3B4 | |
PTPRA | ENSG00000132670.16 | 3457.62690 | 3046.73250 | 0.18240 | 2.71130 | 2.07180 | HepG2 | SMN1 | |
PTPRA | ENSG00000132670.16 | 1998.56350 | 3126.92570 | -0.64580 | 5.49610 | 4.11390 | HepG2 | SMNDC1 | |
PTPRA | ENSG00000132670.16 | 2727.14870 | 3933.25620 | -0.52830 | 15.24060 | 14.32210 | HepG2 | SRSF1 | |
PTPRA | ENSG00000132670.16 | 3153.54220 | 3622.93300 | -0.20020 | 2.31030 | 1.66970 | HepG2 | SRSF7 | |
PTPRA | ENSG00000132670.16 | 2958.17540 | 3656.96720 | -0.30590 | 5.43340 | 4.76220 | HepG2 | SSB | |
PTPRA | ENSG00000132670.16 | 2259.96560 | 2850.55060 | -0.33490 | 3.94320 | 3.36860 | HepG2 | TIAL1 | |
PTPRA | ENSG00000132670.16 | 3086.62330 | 3545.07030 | -0.19980 | 2.66920 | 2.08130 | HepG2 | UTP3 | |
PTPRA | ENSG00000132670.16 | 4676.18040 | 4038.38180 | 0.21150 | 4.07600 | 3.44690 | HepG2 | ZNF622 | |
PTPRA | ENSG00000132670.16 | 2700.37930 | 1946.04970 | 0.47250 | 10.24420 | 9.24250 | K562 | AGGF1 | |
PTPRA | ENSG00000132670.16 | 1449.29370 | 2078.98560 | -0.52050 | 6.18740 | 5.36960 | K562 | AQR | |
PTPRA | ENSG00000132670.16 | 2379.26720 | 2830.27280 | -0.25040 | 3.43000 | 2.71490 | K562 | DDX47 | |
PTPRA | ENSG00000132670.16 | 1525.94480 | 1163.91600 | 0.39060 | 3.03400 | 1.63910 | K562 | DHX30 | |
PTPRA | ENSG00000132670.16 | 2552.35790 | 2178.98850 | 0.22810 | 2.47900 | 1.65630 | K562 | DKC1 | |
PTPRA | ENSG00000132670.16 | 997.25350 | 1253.38000 | -0.32980 | 2.57420 | 1.78280 | K562 | EIF4A3 | |
PTPRA | ENSG00000132670.16 | 1310.42030 | 1721.66580 | -0.39380 | 4.20050 | 2.87740 | K562 | HNRNPA1 | |
PTPRA | ENSG00000132670.16 | 1485.49280 | 1885.37030 | -0.34390 | 3.29610 | 2.65260 | K562 | HNRNPC | |
PTPRA | ENSG00000132670.16 | 1305.30020 | 1595.23510 | -0.28940 | 2.31930 | 1.54530 | K562 | MAGOH | |
PTPRA | ENSG00000132670.16 | 1283.11440 | 1592.00660 | -0.31120 | 2.73860 | 1.82050 | K562 | MATR3 | |
PTPRA | ENSG00000132670.16 | 3103.13690 | 2407.39920 | 0.36620 | 4.14880 | 2.99860 | K562 | MBNL1 | |
PTPRA | ENSG00000132670.16 | 1767.29420 | 2203.98470 | -0.31860 | 4.90030 | 3.84710 | K562 | MTPAP | |
PTPRA | ENSG00000132670.16 | 2648.01190 | 3352.11360 | -0.34020 | 3.54630 | 2.62500 | K562 | PUF60 | |
PTPRA | ENSG00000132670.16 | 2735.37200 | 2008.19090 | 0.44570 | 4.72530 | 4.04020 | K562 | PUS1 | |
PTPRA | ENSG00000132670.16 | 892.69970 | 1229.16000 | -0.46140 | 3.16180 | 2.28610 | K562 | RPS19 | |
PTPRA | ENSG00000132670.16 | 2850.95450 | 2416.29840 | 0.23850 | 2.65500 | 1.85570 | K562 | SF3A3 | |
PTPRA | ENSG00000132670.16 | 1038.72070 | 1519.38060 | -0.54870 | 7.08060 | 5.95760 | K562 | SRSF1 | |
PTPRA | ENSG00000132670.16 | 1197.85180 | 1537.72460 | -0.36030 | 2.78480 | 2.07570 | K562 | TARDBP | |
Gene Name | Gene ID | KDMean | CNMean | log2(fold change) | -log(pval) | -log(padj) | Cell Line | Affected by RBP | Bound by RBP |
*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".
The Knockdown/knockout RNA-Seq assay for PTPRA is not available on ENCORE database.
13 RBPs can affect the splicing of PTPRA :
Event Type | Gene Name | Gene ID | chr | Strand | ExonStart | ExonEnd | 2ndExonStart | 2ndExonEnd | upstreamES | upstreamEE | downstreamES | downstreamEE | dPSI | p-value | FDR | is_included | Cell Line | Affected by RBP | Bound by RBP |
SE | PTPRA | ENSG00000132670.16 | chr20 | + | 3003334 | 3003470 | | | 3001954 | 3002074 | 3005117 | 3005267 | -0.07700 | 0.00139 | 0.07611 | excluded | HepG2 | RBM22 | |
SE | PTPRA | ENSG00000132670.16 | chr20 | + | 2955860 | 2955887 | | | 2945506 | 2945848 | 2967410 | 2967495 | 0.10300 | 0.00001 | 0.00031 | included | HepG2 | U2AF1 | |
SE | PTPRA | ENSG00000132670.16 | chr20 | + | 3003334 | 3003470 | | | 3001954 | 3002074 | 3005117 | 3005267 | -0.11100 | 0.00000 | 0.00002 | excluded | HepG2 | U2AF1 | |
SE | PTPRA | ENSG00000132670.16 | chr20 | + | 2928627 | 2928670 | | | 2903852 | 2903931 | 2944917 | 2944996 | -0.19800 | 0.00021 | 0.03291 | excluded | HepG2 | HNRNPM | |
SE | PTPRA | ENSG00000132670.16 | chr20 | + | 3001954 | 3002074 | | | 2998461 | 2998559 | 3005117 | 3005267 | -0.08900 | 0.00256 | 0.05701 | excluded | HepG2 | HNRNPK | |
SE | PTPRA | ENSG00000132670.16 | chr20 | + | 2928627 | 2928670 | | | 2903852 | 2903931 | 2944917 | 2944996 | -0.07300 | 0.00746 | 0.07256 | excluded | HepG2 | U2AF2 | |
SE | PTPRA | ENSG00000132670.16 | chr20 | + | 3003334 | 3003470 | | | 3001954 | 3002074 | 3005117 | 3005267 | -0.05200 | 0.00000 | 0.00008 | excluded | HepG2 | U2AF2 | |
SE | PTPRA | ENSG00000132670.16 | chr20 | + | 3015546 | 3015732 | | | 3008352 | 3008487 | 3016230 | 3016356 | 0.06800 | 0.00000 | 0.00030 | included | K562 | HNRNPA1 | |
SE | PTPRA | ENSG00000132670.16 | chr20 | + | 2955860 | 2955887 | | | 2945506 | 2945848 | 2967410 | 2967495 | -0.13900 | 0.00052 | 0.07095 | excluded | K562 | DROSHA | |
SE | PTPRA | ENSG00000132670.16 | chr20 | + | 3001954 | 3002074 | | | 2998461 | 2998559 | 3005117 | 3005267 | -0.20000 | 0.00014 | 0.03279 | excluded | K562 | LARP4 | |
SE | PTPRA | ENSG00000132670.16 | chr20 | + | 2936254 | 2936344 | | | 2928627 | 2928670 | 2944917 | 2944996 | 0.19000 | 0.00000 | 0.00014 | included | HepG2 | MATR3 | |
SE | PTPRA | ENSG00000132670.16 | chr20 | + | 2968008 | 2968070 | | | 2967410 | 2967495 | 2968677 | 2968751 | 0.09300 | 0.00000 | 0.00000 | included | HepG2 | HNRNPL | |
SE | PTPRA | ENSG00000132670.16 | chr20 | + | 2955860 | 2955887 | | | 2945506 | 2945848 | 2967410 | 2967495 | -0.11200 | 0.00041 | 0.05731 | excluded | HepG2 | HNRNPUL1 | |
SE | PTPRA | ENSG00000132670.16 | chr20 | + | 3001954 | 3002074 | | | 2998470 | 2998559 | 3005117 | 3005267 | -0.16900 | 0.00012 | 0.00574 | excluded | HepG2 | SF3A3 | |
SE | PTPRA | ENSG00000132670.16 | chr20 | + | 2955860 | 2955887 | | | 2945506 | 2945848 | 2967410 | 2967495 | -0.13900 | 0.00140 | 0.08199 | excluded | K562 | HNRNPUL1 | |
A3SS | PTPRA | ENSG00000132670.16 | chr20 | + | 2903831 | 2903931 | | | 2903852 | 2903931 | 2854328 | 2854406 | 0.12000 | 0.01915 | 0.09189 | longer | K562 | AQR | |
MXE | PTPRA | ENSG00000132670.16 | chr20 | + | 2928627 | 2928670 | 2944917 | 2944996 | 2903852 | 2903931 | 2967410 | 2967495 | -0.07300 | 0.00330 | 0.02167 | 2included | HepG2 | U2AF2 | |
*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".
The Knockdown/knockout RNA-Seq assay for PTPRA is not avaliable on ENCORE database.