PIBF1

General Information

Gene Name       : PIBF1
Gene ID             : ENSG00000083535.15
Essential Gene : No

Functions

Localization

Domains (AlphaFold: PIBF1)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878PIBF1ENSG00000083535.1511.139.3810.26ENCSR000AEF
HepG2PIBF1ENSG00000083535.155.237.296.26ENCSR985KAT
K562PIBF1ENSG00000083535.1513.0114.8913.95ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for PIBF1 is not avaliable on ENCORE database.



Proteins bound to RNA
  • PIBF1 RNA is bound by 10 proteins.  







eCLIP assay for PIBF1 is not avaliable on ENCORE database.





10 proteins are bound to PIBF1 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr137335628873356389+5'-UTR3.5271314.75009K562ZNF622
chr137336658673366600+CDS3.991343.06595HepG2BCLAF1
chr137336664473366677+CDS4.381363.89826HepG2BCLAF1
chr137340118473401235+CDS3.916525.80935K562ZNF622
chr137336952073369571+CDS3.963085.47804K562ZNF622
chr137337208973372127+CDS4.430564.04372HepG2BCLAF1
chr137339598673396072+CDS,intron-Proximal3.548047.28841K562ZNF622
chr137336953373369589+CDS3.638086.36847HepG2BCLAF1
chr137335769673357742+CDS,intron-Distal4.387076.81238K562ZNF622
chr137336967373369694+CDS4.483404.77252K562ZNF622
chr137335766673357695+CDS,intron-Distal4.422594.37348HepG2BCLAF1
chr137341891473419008+intron-Distal5.7076312.00098K562AGGF1
chr137357447573574559+intron-Distal4.402564.55788HepG2QKI
chr137342017073420258+intron-Distal3.182323.18966K562MATR3
chr137341180273411874+intron-Distal4.296803.80778HepG2QKI
chr137345277473452906+intron-Distal3.728783.16028HepG2SUGP2
chr137340392773403994+intron-Distal4.325733.59909K562EXOSC5
chr137340759573407672+intron-Distal3.846023.54208HepG2SUGP2
chr137342073473420854+intron-Distal4.152233.45817K562MATR3
chr137351509473515162+intron-Distal4.138503.54208HepG2SUGP2
chr137342018173420252+intron-Distal4.242794.78128HepG2SUGP2
chr137340527073405317+intron-Distal4.299503.89085K562EXOSC5
chr137340711173407186+intron-Distal3.747864.94624HepG2MATR3
chr137345270973452837+intron-Distal3.631305.32884K562KHSRP
chr137340582373405885+intron-Distal4.145233.27829HepG2MATR3
chr137351397273514015+intron-Distal3.804793.29248HepG2SUGP2
chr137340419673404239+intron-Distal3.214543.43829K562EXOSC5
chr137346728673467395+intron-Distal4.123973.66668K562KHSRP
chr137342764673427769+intron-Distal4.450823.18981K562PTBP1
chr137337277573372920+intron-Distal4.2523912.78173HepG2QKI
chr137340712573407203+intron-Distal3.315323.84025HepG2SUGP2
chr137341994373419995+intron-Distal3.829813.04224HepG2SUGP2
chr137341178273411855+intron-Distal3.602045.00400K562QKI
chr137342447473424596+intron-Distal4.087283.55640HepG2QKI
chr137342787673428006+intron-Distal3.855893.39667K562HNRNPL
chr137337277673372910+intron-Distal5.707329.92723K562QKI
chr137340580873405888+intron-Distal4.388028.80887K562EXOSC5
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for PIBF1 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for PIBF1 is not available on ENCORE database.

  • 53 RBPs can affect the levels of PIBF1.  








The Knockdown/knockout RNA-Seq assay for PIBF1 is not available on ENCORE database.





53 RBPs can affect the gene expression of PIBF1 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
PIBF1ENSG00000083535.11204.41560327.87860-0.681703.267502.69610HepG2AKAP1
PIBF1ENSG00000083535.11194.43810348.41900-0.841505.840804.81980HepG2DAZAP1
PIBF1ENSG00000083535.11148.90630269.80660-0.857504.486403.71520HepG2DDX6
PIBF1ENSG00000083535.11145.51350234.03430-0.685602.478801.80930HepG2DNAJC21
PIBF1ENSG00000083535.11179.92220259.36710-0.527602.151601.62130HepG2EIF2S1
PIBF1ENSG00000083535.11187.04810286.62900-0.615802.919402.26280HepG2EIF4A3
PIBF1ENSG00000083535.11283.12950368.22200-0.379101.829701.32000HepG2ETF1
PIBF1ENSG00000083535.11178.47140268.27490-0.588002.657302.00440HepG2G3BP1
PIBF1ENSG00000083535.11128.23970241.37530-0.912404.651303.83400HepG2GPKOW
PIBF1ENSG00000083535.11162.79460228.66190-0.490202.510901.57600HepG2HDGF
PIBF1ENSG00000083535.11128.32120236.27570-0.880703.219602.52940HepG2HNRNPA1
PIBF1ENSG00000083535.11123.40830262.79000-1.090504.680703.79430HepG2HNRNPC
PIBF1ENSG00000083535.11154.92860317.35280-1.034508.192707.08820HepG2HNRNPL
PIBF1ENSG00000083535.11170.21180261.05430-0.617002.112901.57490HepG2HNRNPU
PIBF1ENSG00000083535.11161.59240272.69430-0.754903.929903.13880HepG2IGF2BP2
PIBF1ENSG00000083535.11167.23270290.92230-0.798804.120003.36480HepG2MATR3
PIBF1ENSG00000083535.11150.09000297.77430-0.988406.230105.29580HepG2NCBP2
PIBF1ENSG00000083535.11178.88380265.18340-0.568002.511001.82030HepG2PABPC4
PIBF1ENSG00000083535.11150.35760232.84360-0.631002.112601.46150HepG2PPIL4
PIBF1ENSG00000083535.11103.26320164.03550-0.667702.014601.32200HepG2PRPF8
PIBF1ENSG00000083535.11194.63400329.83470-0.761004.754103.99890HepG2PUF60
PIBF1ENSG00000083535.11140.32580236.25650-0.751603.737902.96260HepG2RPLP0
PIBF1ENSG00000083535.11113.59290183.18410-0.689403.032202.39270HepG2RPS19
PIBF1ENSG00000083535.11240.10250316.32660-0.397801.919901.31740HepG2SLBP
PIBF1ENSG00000083535.11233.40600325.70260-0.480702.560001.95350HepG2SRSF5
PIBF1ENSG00000083535.11153.93310215.49220-0.485302.115101.49730HepG2SRSF7
PIBF1ENSG00000083535.11176.23000245.67090-0.479302.514901.98290HepG2SRSF9
PIBF1ENSG00000083535.11145.35460224.50810-0.627202.753802.03060HepG2TARDBP
PIBF1ENSG00000083535.11116.90150253.74940-1.118104.490203.88520HepG2TIAL1
PIBF1ENSG00000083535.11142.58900255.92500-0.843903.242002.64250HepG2TRIM56
PIBF1ENSG00000083535.11210.04490322.28750-0.617703.297402.33680HepG2TUFM
PIBF1ENSG00000083535.11346.81460474.35660-0.451802.463701.64340K562BOP1
PIBF1ENSG00000083535.11578.16030879.96830-0.606003.114501.97800K562CNOT7
PIBF1ENSG00000083535.11363.32650504.39690-0.473303.217702.37070K562CPSF6
PIBF1ENSG00000083535.11382.95270537.22190-0.488403.660502.44040K562DDX3X
PIBF1ENSG00000083535.11416.64380544.66750-0.386602.841301.51000K562DDX6
PIBF1ENSG00000083535.11899.582301249.05920-0.473505.840304.49740K562EIF4G2
PIBF1ENSG00000083535.11335.31930513.17380-0.613904.389303.31090K562FMR1
PIBF1ENSG00000083535.11290.38600434.94450-0.582903.616002.55790K562FTO
PIBF1ENSG00000083535.11416.72880583.68260-0.486104.249303.52230K562FXR1
PIBF1ENSG00000083535.11968.58620668.620200.534603.404802.60480K562G3BP2
PIBF1ENSG00000083535.11428.88030568.77310-0.407303.090601.88210K562GLRX3
PIBF1ENSG00000083535.11366.35090481.59070-0.394602.224501.51200K562GPKOW
PIBF1ENSG00000083535.11582.11260782.85770-0.427503.169402.36290K562GRSF1
PIBF1ENSG00000083535.11205.44300485.82750-1.2417014.3816013.10640K562HNRNPC
PIBF1ENSG00000083535.11322.33920433.80790-0.428502.386201.33950K562HNRNPF
PIBF1ENSG00000083535.11498.90540759.50380-0.606306.087204.45710K562HNRNPL
PIBF1ENSG00000083535.11462.74030779.76690-0.752809.365407.56450K562MATR3
PIBF1ENSG00000083535.11337.57320470.07960-0.477702.484401.65870K562METAP2
PIBF1ENSG00000083535.11490.37090597.99120-0.286302.039301.33990K562MTPAP
PIBF1ENSG00000083535.11499.81180664.41950-0.410704.239003.33710K562NSUN2
PIBF1ENSG00000083535.11271.60430435.58510-0.681404.297603.13350K562PSIP1
PIBF1ENSG00000083535.111169.201401420.31840-0.280702.394901.50070K562PUM2
PIBF1ENSG00000083535.11532.37340801.53710-0.590303.152401.51370K562SBDS
PIBF1ENSG00000083535.11509.38710655.61610-0.364102.684101.88040K562SF3A3
PIBF1ENSG00000083535.11247.26430376.69730-0.607403.566002.36130K562SRFBP1
PIBF1ENSG00000083535.11538.10850744.10610-0.467603.953203.11390K562SRSF1
PIBF1ENSG00000083535.11438.20270753.15470-0.781308.234206.93040K562TARDBP
PIBF1ENSG00000083535.11559.25410726.48410-0.377402.842402.01150K562TIA1
PIBF1ENSG00000083535.11275.63470418.96590-0.604103.543602.48030K562TIAL1
PIBF1ENSG00000083535.11289.16920445.04230-0.622004.057202.86680K562TRIM56
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for PIBF1 is not available on ENCORE database.





11 RBPs can affect the splicing of PIBF1 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SEPIBF1ENSG00000083535.11chr13+734679217346808773428194734282937348266873482819-0.176000.000230.07267excludedK562IGF2BP2
SEPIBF1ENSG00000083535.11chr13+7351398573514072735053027350540573539411735395420.209000.000010.00235includedK562MATR3
SEPIBF1ENSG00000083535.11chr13+734679217346808773428194734282937348266873482819-0.186000.000010.00062excludedK562AKAP8L
SEPIBF1ENSG00000083535.11chr13+735477287354781373539411735395427357295973573133-0.142000.000030.00054excludedK562AQR
SEPIBF1ENSG00000083535.11chr13+733575607335785973356196733564877336658473366685-0.227000.000120.00208excludedK562AQR
SEPIBF1ENSG00000083535.11chr13+734018707340205273401147734012567340938073409506-0.114000.000530.00712excludedK562AQR
SEPIBF1ENSG00000083535.11chr13+734679217346808773428194734282937348266873482819-0.091000.005000.06223excludedK562PUS1
SEPIBF1ENSG00000083535.11chr13+7350675873506836735053027350540573539411735395420.200000.000830.05753includedHepG2HNRNPL
SEPIBF1ENSG00000083535.11chr13+733575607335785973356196733564877336658473366685-0.173000.001690.05623excludedK562TARDBP
SEPIBF1ENSG00000083535.11chr13+734679217346808773428194734282937348266873482819-0.140000.000130.00532excludedK562RBM15
SEPIBF1ENSG00000083535.11chr13+734679217346808773428194734282937348266873482819-0.234000.000000.00003excludedK562AGGF1
SEPIBF1ENSG00000083535.11chr13+733575607335785973356196733564877336658473366685-0.178000.000270.01689excludedK562HNRNPK
A3SSPIBF1ENSG00000083535.11chr13+7339595373396120733959867339612073372044733721640.105000.000060.00056longerK562AQR
A3SSPIBF1ENSG00000083535.11chr13+7337201673372164733720447337216473369496733696950.106000.000200.00166longerK562AQR
A3SSPIBF1ENSG00000083535.11chr13+7336946973369695733694967336969573366584733666850.122000.000000.00001longerK562AQR
A3SSPIBF1ENSG00000083535.11chr13+7346789373468087734679217346808773428194734282930.115000.000080.00071longerK562AQR
MXEPIBF1ENSG00000083535.11chr13+73409321734095067342819473428293734011477340125673467921734680870.065000.002070.017141includedK562AQR
MXEPIBF1ENSG00000083535.11chr13+7353941173539542735477287354781373505302735054057357295973573133-0.310000.000550.087842includedHepG2SUB1

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for PIBF1 is not avaliable on ENCORE database.