PDZD11

General Information

Gene Name       : PDZD11
Gene ID             : ENSG00000120509.10
Essential Gene : No

Functions

Localization

Domains (AlphaFold: PDZD11)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878PDZD11ENSG00000120509.1048.0036.4342.22ENCSR000AEF
HepG2PDZD11ENSG00000120509.1029.0933.5431.31ENCSR985KAT
K562PDZD11ENSG00000120509.1032.9735.5734.27ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for PDZD11 is not avaliable on ENCORE database.



Proteins bound to RNA
  • PDZD11 RNA is bound by 2 proteins.  







eCLIP assay for PDZD11 is not avaliable on ENCORE database.





2 proteins are bound to PDZD11 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chrX6950970869509758-5'-UTR,intron-Distal3.657925.44096K562DDX3X
chrX6950917869509264-5'-UTR,CDS,intron-Distal,intron-Proximal4.605793.70131HepG2PRPF8
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for PDZD11 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for PDZD11 is not available on ENCORE database.

  • 57 RBPs can affect the levels of PDZD11.  








The Knockdown/knockout RNA-Seq assay for PDZD11 is not available on ENCORE database.





57 RBPs can affect the gene expression of PDZD11 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
PDZD11ENSG00000120509.6489.29990322.816300.599906.050205.22090HepG2ACO1
PDZD11ENSG00000120509.6457.84150330.273300.471103.176902.35580HepG2CALR
PDZD11ENSG00000120509.6268.28150370.66060-0.466402.354501.33540HepG2CPSF7
PDZD11ENSG00000120509.6702.59610485.677900.532603.637402.93070HepG2DDX3X
PDZD11ENSG00000120509.6565.64820346.169000.708304.694303.71470HepG2DDX55
PDZD11ENSG00000120509.6214.29540417.18190-0.961106.900705.96020HepG2DDX6
PDZD11ENSG00000120509.6598.37360454.430800.396902.067001.39710HepG2FIP1L1
PDZD11ENSG00000120509.6199.13590364.71390-0.873005.516604.63390HepG2GPKOW
PDZD11ENSG00000120509.6364.58370489.35010-0.424603.433302.64060HepG2HNRNPF
PDZD11ENSG00000120509.6304.30100420.02030-0.465002.402401.74930HepG2HNRNPK
PDZD11ENSG00000120509.6297.38150469.01270-0.657306.770205.75950HepG2HNRNPL
PDZD11ENSG00000120509.6245.33410347.17150-0.500902.038301.50850HepG2HNRNPU
PDZD11ENSG00000120509.6501.94890367.833900.448402.815002.00000HepG2MSI2
PDZD11ENSG00000120509.6390.11190510.55700-0.388202.572701.83780HepG2NOL12
PDZD11ENSG00000120509.6283.83210410.07860-0.530902.884202.14730HepG2PABPC4
PDZD11ENSG00000120509.6228.22080426.69900-0.9028010.142809.09740HepG2PCBP1
PDZD11ENSG00000120509.6174.24060345.38960-0.987106.153704.65020HepG2PCBP2
PDZD11ENSG00000120509.6247.22130487.37640-0.979209.961308.92710HepG2PUF60
PDZD11ENSG00000120509.6417.27150517.37750-0.310202.213301.67020HepG2PUM1
PDZD11ENSG00000120509.6749.07600465.320600.686808.699307.89940HepG2RBM22
PDZD11ENSG00000120509.6382.86320483.20120-0.335802.025101.54690HepG2NELFE
PDZD11ENSG00000120509.6302.53270450.02640-0.572904.688803.91530HepG2RECQL
PDZD11ENSG00000120509.6347.39250480.78340-0.468804.054603.23720HepG2SRSF7
PDZD11ENSG00000120509.6292.51870383.85630-0.392002.547202.01250HepG2SRSF9
PDZD11ENSG00000120509.6206.61350306.89400-0.570803.194702.18950HepG2SUPT6H
PDZD11ENSG00000120509.6298.86420424.08760-0.504903.743903.10800HepG2TAF15
PDZD11ENSG00000120509.6291.84730388.76290-0.413701.881201.35210HepG2U2AF1
PDZD11ENSG00000120509.696.84330203.57660-1.071806.103704.96710HepG2UCHL5
PDZD11ENSG00000120509.6188.74860315.57380-0.741503.114302.04810HepG2UPF2
PDZD11ENSG00000120509.6195.55920339.23220-0.794704.524803.60520HepG2XRN2
PDZD11ENSG00000120509.6439.30930341.843400.361802.453801.81520HepG2ZC3H8
PDZD11ENSG00000120509.6489.17740336.537400.539505.327604.63100HepG2ZNF622
PDZD11ENSG00000120509.6637.74490497.016000.359602.593902.04090K562AGGF1
PDZD11ENSG00000120509.6766.61230517.154200.567804.870503.99390K562AKAP8L
PDZD11ENSG00000120509.6938.58940727.668700.367102.684601.46220K562APOBEC3C
PDZD11ENSG00000120509.6843.64030594.005300.506104.770503.18970K562CCDC124
PDZD11ENSG00000120509.6534.52490384.701800.474402.938101.61410K562CIRBP
PDZD11ENSG00000120509.6448.87100331.162100.438703.307701.84680K562DDX27
PDZD11ENSG00000120509.6575.65730468.621200.296701.954301.33130K562EIF2S2
PDZD11ENSG00000120509.6766.23530484.095900.662406.446605.11170K562FIP1L1
PDZD11ENSG00000120509.6355.59270246.810800.526703.583802.03110K562FUS
PDZD11ENSG00000120509.6402.13380311.567800.368002.190101.64050K562FXR1
PDZD11ENSG00000120509.6200.87740321.57850-0.678903.706302.02000K562GEMIN5
PDZD11ENSG00000120509.6315.20880459.94840-0.545202.063201.37370K562GPKOW
PDZD11ENSG00000120509.6909.13670624.504800.541704.959703.95000K562GRSF1
PDZD11ENSG00000120509.6499.91600369.551100.435802.639402.05440K562HNRNPC
PDZD11ENSG00000120509.6720.28410398.162300.855108.060006.33160K562HNRNPM
PDZD11ENSG00000120509.6276.44830486.24360-0.814707.666606.18670K562HNRNPU
PDZD11ENSG00000120509.6978.11130656.350300.575405.274304.19340K562HSPD1
PDZD11ENSG00000120509.6405.85680299.148500.440002.678001.46860K562NCBP2
PDZD11ENSG00000120509.6189.79040335.63780-0.822505.828504.39500K562PCBP2
PDZD11ENSG00000120509.6860.77020640.675600.425902.704001.88160K562PCBP3
PDZD11ENSG00000120509.6728.95210549.525100.407502.788101.96320K562PPIG
PDZD11ENSG00000120509.6507.79170366.512600.470303.477002.74340K562PTBP1
PDZD11ENSG00000120509.6919.46010512.971600.841809.722508.75270K562PUS1
PDZD11ENSG00000120509.6631.43380499.733600.337401.917701.40850K562RBM15
PDZD11ENSG00000120509.6484.24020317.942200.606903.687302.74100K562RPS19
PDZD11ENSG00000120509.6435.07830267.096700.703803.688301.86540K562SERBP1
PDZD11ENSG00000120509.6627.88890492.904200.349102.344101.58790K562SYNCRIP
PDZD11ENSG00000120509.6478.93000363.633200.397202.198501.56360K562TARDBP
PDZD11ENSG00000120509.6669.97190515.552800.377902.962601.64820K562TROVE2
PDZD11ENSG00000120509.6186.09220319.85400-0.781404.845203.45820K562UCHL5
PDZD11ENSG00000120509.6140.42430325.69950-1.2137010.322907.61250K562XRN2
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for PDZD11 is not available on ENCORE database.





10 RBPs can affect the splicing of PDZD11 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SEPDZD11ENSG00000120509.6chrX-695093716950944369509037695092046950970969509795-0.144000.000410.09927excludedK562IGF2BP2
SEPDZD11ENSG00000120509.6chrX-6950937169509471695090376950920469509709695097950.063000.001550.08270includedHepG2RBM22
SEPDZD11ENSG00000120509.6chrX-6950937169509443695091046950920469509709695097950.122000.001440.03432includedHepG2SRSF1
SEPDZD11ENSG00000120509.6chrX-695093716950944369509037695092046950970969509795-0.118000.000360.01360excludedHepG2SF3A3
SEPDZD11ENSG00000120509.6chrX-695093716950944369509037695092046950970969509795-0.165000.000060.05407excludedK562TRA2A
RIPDZD11ENSG00000120509.6chrX-695091046950944369509104695092046950937169509443-0.170000.000160.00139excludedK562PUS1
RIPDZD11ENSG00000120509.6chrX-695091046950944369509104695092046950937169509443-0.162000.003090.08205excludedK562HNRNPUL1
RIPDZD11ENSG00000120509.6chrX-695091046950944369509104695092046950937169509443-0.148000.009950.08898excludedK562AGGF1
RIPDZD11ENSG00000120509.6chrX-6950910469509443695091046950920469509371695094430.227000.010560.09043includedHepG2HNRNPK
RIPDZD11ENSG00000120509.6chrX-6950910469509443695091046950920469509371695094430.193000.009280.05037includedK562AQR

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for PDZD11 is not avaliable on ENCORE database.