PCIF1

General Information

Gene Name       : PCIF1
Gene ID             : ENSG00000100982.11
Essential Gene : No

Functions

Localization

Domains (AlphaFold: PCIF1)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878PCIF1ENSG00000100982.118.4915.9312.21ENCSR000AEF
HepG2PCIF1ENSG00000100982.1128.1420.4024.27ENCSR985KAT
K562PCIF1ENSG00000100982.1124.3318.7221.52ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for PCIF1 is not avaliable on ENCORE database.



Proteins bound to RNA
  • PCIF1 RNA is bound by 14 proteins.  







eCLIP assay for PCIF1 is not avaliable on ENCORE database.





14 proteins are bound to PCIF1 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr204457656244576648+3'-UTR3.888895.87410HepG2DDX59
chr204457649044576612+3'-UTR5.576546.46614K562PCBP1
chr204457657444576635+3'-UTR4.9945610.39610HepG2PCBP2
chr204457654644576574+3'-UTR6.145069.83211HepG2PCBP2
chr204457650544576572+3'-UTR3.881653.06084HepG2HNRNPK
chr204457653744576630+3'-UTR5.4446767.45247K562PUM2
chr204457650344576546+3'-UTR4.487678.47057HepG2PCBP2
chr204457651344576644+3'-UTR4.316113.62737K562HNRNPK
chr204457579544575846+CDS,intron-Proximal5.268678.38577HepG2PRPF8
chr204457352744573557+CDS3.300233.91115K562LIN28B
chr204457344744573541+CDS,intron-Proximal3.452116.09869HepG2SF3B4
chr204457175344571783+CDS4.453163.79199HepG2PPIG
chr204456780444567869+CDS,intron-Proximal4.041956.75344HepG2EFTUD2
chr204457502044575061+CDS,intron-Proximal3.775347.26133HepG2PRPF8
chr204457355744573602+CDS4.399204.78556K562LIN28B
chr204456793844567974+CDS3.964138.78209HepG2PRPF8
chr204456797444568028+CDS,intron-Proximal4.7528014.79390HepG2PRPF8
chr204456796444568024+CDS,intron-Proximal4.127143.85435K562PRPF8
chr204456792844567972+CDS3.442335.14253HepG2GRWD1
chr204456964644569722+CDS,intron-Proximal5.1294210.93557HepG2EFTUD2
chr204456793144568004+CDS,intron-Proximal3.320498.10600HepG2PPIG
chr204457203244572103+CDS,intron-Proximal4.959989.10443HepG2PRPF8
chr204456974044569778+CDS4.969377.35950HepG2PPIG
chr204457565444575724+CDS,intron-Proximal4.443474.28193HepG2AQR
chr204457239944572436+CDS,intron-Proximal4.120945.61068HepG2PRPF8
chr204457502144575070+CDS,intron-Proximal5.181375.69951K562AQR
chr204457234344572409+CDS,intron-Proximal3.673703.01533HepG2SRSF1
chr204456923444569296+CDS,intron-Proximal4.286018.47952HepG2PRPF8
chr204457361144573660+CDS4.568955.85983HepG2GRWD1
chr204456842644568460+intron-Distal4.287885.29549HepG2EFTUD2
chr204456925144569298+intron-Proximal5.618608.03507K562AQR
chr204457563444575698+intron-Proximal4.314044.50924HepG2SF3B4
chr204457243244572494+intron-Proximal6.2433611.34105HepG2RBM22
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for PCIF1 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for PCIF1 is not available on ENCORE database.

  • 60 RBPs can affect the levels of PCIF1.  








The Knockdown/knockout RNA-Seq assay for PCIF1 is not available on ENCORE database.





60 RBPs can affect the gene expression of PCIF1 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
PCIF1ENSG00000100982.7387.47060680.24280-0.812008.496507.51720HepG2BOP1
PCIF1ENSG00000100982.7362.71200670.13440-0.8856010.701409.33510HepG2CALR
PCIF1ENSG00000100982.7924.09120632.978100.545802.821002.04850HepG2CNOT7
PCIF1ENSG00000100982.7805.49000624.485000.367102.328701.69010HepG2CPSF6
PCIF1ENSG00000100982.7917.42050758.730100.273902.751501.91970HepG2DDX19B
PCIF1ENSG00000100982.7371.16780578.86400-0.641205.639704.33490HepG2DDX24
PCIF1ENSG00000100982.71328.210901017.585700.384202.352301.77890HepG2DDX6
PCIF1ENSG00000100982.7759.57100558.168900.444403.176902.42810HepG2DNAJC21
PCIF1ENSG00000100982.71200.306901591.78660-0.407205.204304.42660HepG2ETF1
PCIF1ENSG00000100982.7651.286501011.46880-0.635104.044503.24870HepG2G3BP1
PCIF1ENSG00000100982.7942.44560707.861500.412802.524801.91050HepG2GPKOW
PCIF1ENSG00000100982.7944.13570783.215000.269502.409801.49070HepG2HDGF
PCIF1ENSG00000100982.7941.74830760.466300.308402.635001.93460HepG2HNRNPF
PCIF1ENSG00000100982.7464.71470806.04780-0.7945013.8348012.43700HepG2HNRNPL
PCIF1ENSG00000100982.71010.37320622.667700.6983012.5508011.33740HepG2HNRNPU
PCIF1ENSG00000100982.7679.047201028.02760-0.598303.714902.94220HepG2IGF2BP2
PCIF1ENSG00000100982.7745.971501091.07150-0.548602.698502.05010HepG2MAGOH
PCIF1ENSG00000100982.7689.021701097.08400-0.671104.050303.30050HepG2MATR3
PCIF1ENSG00000100982.7727.02840916.71000-0.334502.519601.74670HepG2MSI2
PCIF1ENSG00000100982.7337.30650599.01530-0.828507.397306.21210HepG2NSUN2
PCIF1ENSG00000100982.7404.05650578.66700-0.518202.175701.40300HepG2PABPC1
PCIF1ENSG00000100982.7822.929901029.48760-0.323103.172702.53070HepG2PCBP1
PCIF1ENSG00000100982.7670.88500860.74510-0.359503.534802.66990HepG2PRPF4
PCIF1ENSG00000100982.7849.269601047.59340-0.302802.973202.40970HepG2PTBP1
PCIF1ENSG00000100982.71022.92540889.296400.201902.125401.59200HepG2PUM1
PCIF1ENSG00000100982.71018.090701330.41970-0.386004.388603.77550HepG2RBM22
PCIF1ENSG00000100982.7823.764801029.63680-0.321802.328201.70410HepG2RBM25
PCIF1ENSG00000100982.7697.567101165.82820-0.7410013.3610012.33500HepG2NELFE
PCIF1ENSG00000100982.7728.01870554.510600.392703.990003.24050HepG2SAFB2
PCIF1ENSG00000100982.7836.56630668.616600.323201.972001.37030HepG2SF3B1
PCIF1ENSG00000100982.71086.173101502.62590-0.468208.404307.66120HepG2SRFBP1
PCIF1ENSG00000100982.7524.08820719.50090-0.457202.514801.56370HepG2SRSF3
PCIF1ENSG00000100982.7929.35410747.152600.314702.803102.10280HepG2SRSF7
PCIF1ENSG00000100982.7752.64630926.16120-0.299302.763002.21150HepG2SRSF9
PCIF1ENSG00000100982.71076.851001304.57530-0.276803.170602.63060HepG2SSB
PCIF1ENSG00000100982.7614.53120764.82980-0.315702.214901.37060HepG2SUPT6H
PCIF1ENSG00000100982.7723.837001023.32020-0.499504.696603.99720HepG2TAF15
PCIF1ENSG00000100982.71131.72610467.203401.276304.645003.34480HepG2U2AF2
PCIF1ENSG00000100982.7617.35450800.71650-0.375203.556002.89270HepG2UTP3
PCIF1ENSG00000100982.7748.52510912.13970-0.285202.931502.37350HepG2ZNF622
PCIF1ENSG00000100982.7415.78300794.10260-0.933507.338206.45670K562AQR
PCIF1ENSG00000100982.7320.33190451.13210-0.494002.801201.92250K562BOP1
PCIF1ENSG00000100982.7714.04350885.62030-0.310702.796602.14090K562DDX47
PCIF1ENSG00000100982.7312.24970220.598200.501202.506401.74900K562EIF3G
PCIF1ENSG00000100982.7648.86950496.526000.386003.045601.81610K562EIF4B
PCIF1ENSG00000100982.7340.36370498.14880-0.549503.436002.16230K562FKBP4
PCIF1ENSG00000100982.7331.53940573.41100-0.790409.590308.54410K562FXR1
PCIF1ENSG00000100982.742.09480228.56130-2.4409020.2832017.86890K562G3BP2
PCIF1ENSG00000100982.7650.95210858.59250-0.399403.056902.26450K562GRSF1
PCIF1ENSG00000100982.7256.27420573.29300-1.1616014.6801013.38970K562HNRNPC
PCIF1ENSG00000100982.7445.74030800.35460-0.8444011.092708.84580K562HNRNPL
PCIF1ENSG00000100982.7629.06590379.207000.730105.407503.77110K562IGF2BP2
PCIF1ENSG00000100982.7514.69730385.627500.416402.704401.52920K562IGF2BP3
PCIF1ENSG00000100982.7247.80090391.06190-0.658203.292402.26460K562KRR1
PCIF1ENSG00000100982.7598.92830739.56500-0.304302.466201.70170K562MTPAP
PCIF1ENSG00000100982.7700.05600514.051000.445503.107102.14260K562PSIP1
PCIF1ENSG00000100982.7631.489401192.75070-0.917506.917705.62600K562PUF60
PCIF1ENSG00000100982.7225.96800390.45080-0.789006.008104.31260K562NELFE
PCIF1ENSG00000100982.7327.91790237.510800.465202.596801.77150K562SF3B4
PCIF1ENSG00000100982.7912.73870560.418800.703602.766301.46720K562SFPQ
PCIF1ENSG00000100982.7626.25290444.741600.493703.501002.31290K562SRFBP1
PCIF1ENSG00000100982.7527.55030358.402600.557604.014102.70760K562SRSF5
PCIF1ENSG00000100982.7470.47280676.87610-0.524803.980602.33030K562SSRP1
PCIF1ENSG00000100982.7117.01950224.34700-0.939003.616901.85810K562TAF15
PCIF1ENSG00000100982.7549.77220370.393000.569704.372603.30540K562TIA1
PCIF1ENSG00000100982.7529.66150363.575400.542703.742702.44410K562TRA2A
PCIF1ENSG00000100982.7163.00500228.69190-0.488502.249301.52560K562U2AF2
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for PCIF1 is not available on ENCORE database.





7 RBPs can affect the splicing of PCIF1 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SEPCIF1ENSG00000100982.7chr20+4457288344572959445723044457240444573506445736690.202000.004710.07229includedK562SRSF1
SEPCIF1ENSG00000100982.7chr20+445691134456925144567853445679784456944744569578-0.154000.001790.03337excludedK562SRSF1
SEPCIF1ENSG00000100982.7chr20+4457288344572959445723044457240444573506445736690.170000.000010.00075includedK562FXR1
SEPCIF1ENSG00000100982.7chr20+445691134456925144567853445679784456944744569578-0.304000.001550.03213excludedK562U2AF1
SEPCIF1ENSG00000100982.7chr20+4457288344572959445723044457240444573506445736690.294000.000000.00000includedHepG2HNRNPL
SEPCIF1ENSG00000100982.7chr20+4457288344572959445723044457240444573506445736690.278000.001210.07357includedK562HNRNPL
SEPCIF1ENSG00000100982.7chr20+4457288344572959445723044457240444573506445736690.080000.000120.00433includedHepG2SRSF1
RIPCIF1ENSG00000100982.7chr20+4457590144576662445759014457607744576162445766620.070000.000150.00282includedHepG2SF3A3
RIPCIF1ENSG00000100982.7chr20+4457590144576662445759014457607744576162445766620.212000.000000.00000includedHepG2RBM22
RIPCIF1ENSG00000100982.7chr20+4457590144576662445759014457607744576162445766620.072000.003520.02089includedK562AQR

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for PCIF1 is not avaliable on ENCORE database.