PCED1B

General Information

Gene Name       : PCED1B
Gene ID             : ENSG00000179715.12
Essential Gene : No

Functions

Localization

Domains (AlphaFold: PCED1B)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878PCED1BENSG00000179715.121.773.512.64ENCSR000AEF
HepG2PCED1BENSG00000179715.120.350.510.43ENCSR985KAT
K562PCED1BENSG00000179715.126.926.246.58ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for PCED1B is not avaliable on ENCORE database.



Proteins bound to RNA
  • PCED1B RNA is bound by 1 proteins.  







eCLIP assay for PCED1B is not avaliable on ENCORE database.





1 proteins are bound to PCED1B RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr124753342647533659+intron-Distal4.070893.60944K562TARDBP
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for PCED1B is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for PCED1B is not available on ENCORE database.

  • 60 RBPs can affect the levels of PCED1B.  








The Knockdown/knockout RNA-Seq assay for PCED1B is not available on ENCORE database.





60 RBPs can affect the gene expression of PCED1B :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
PCED1BENSG00000179715.837.687105.469402.784505.814504.73960HepG2AKAP8L
PCED1BENSG00000179715.849.4327013.689701.852303.910703.00050HepG2CIRBP
PCED1BENSG00000179715.857.861405.820203.313408.440607.12460HepG2CNOT7
PCED1BENSG00000179715.844.6413014.399101.632303.700402.86380HepG2DAZAP1
PCED1BENSG00000179715.847.442708.842502.423605.520704.59710HepG2DDX21
PCED1BENSG00000179715.8114.3974029.034001.978105.891604.41120HepG2FTO
PCED1BENSG00000179715.826.571006.092202.124702.688301.80450HepG2GEMIN5
PCED1BENSG00000179715.831.015705.899802.394203.711302.52750HepG2GNB2L1
PCED1BENSG00000179715.840.6114011.396501.833203.266802.57240HepG2HNRNPA1
PCED1BENSG00000179715.833.6215012.678801.406901.896801.31100HepG2HNRNPC
PCED1BENSG00000179715.843.4066010.434302.056504.072702.93900HepG2HNRNPM
PCED1BENSG00000179715.872.5583012.235502.568007.753806.46350HepG2MSI2
PCED1BENSG00000179715.837.8493013.630501.473302.568901.99230HepG2PUF60
PCED1BENSG00000179715.835.2038014.459101.283702.006501.42940HepG2PUM2
PCED1BENSG00000179715.827.342305.547102.301203.510102.83520HepG2PUS1
PCED1BENSG00000179715.838.3542010.121101.921903.482702.91980HepG2RBM22
PCED1BENSG00000179715.829.405805.659402.377302.881201.79830HepG2RCC2
PCED1BENSG00000179715.840.033709.794802.031003.766803.15420HepG2NELFE
PCED1BENSG00000179715.841.003706.660702.621905.076004.27230HepG2RPS19
PCED1BENSG00000179715.835.522906.427702.466304.006003.05190HepG2RPS2
PCED1BENSG00000179715.830.4689011.430501.414301.947901.50530HepG2SRFBP1
PCED1BENSG00000179715.828.620609.563301.581402.094301.66700HepG2SRSF1
PCED1BENSG00000179715.836.014409.922901.859603.398002.84270HepG2SSB
PCED1BENSG00000179715.867.1839015.305902.133907.288706.36000HepG2SUCLG1
PCED1BENSG00000179715.879.4010030.555401.377603.919103.07370HepG2TARDBP
PCED1BENSG00000179715.830.106407.730601.961302.532901.50850HepG2TBRG4
PCED1BENSG00000179715.847.4273012.229701.955204.634704.02210HepG2TIAL1
PCED1BENSG00000179715.842.8017012.940201.725702.634002.01990HepG2U2AF1
PCED1BENSG00000179715.848.267004.860003.311905.033903.67720HepG2U2AF2
PCED1BENSG00000179715.80.0000010.64740-99999.999992.995802.20870HepG2UCHL5
PCED1BENSG00000179715.836.3596011.653201.641503.113702.38130HepG2UPF1
PCED1BENSG00000179715.839.6915011.977001.728503.389802.24400HepG2UTP18
PCED1BENSG00000179715.830.044607.322602.036603.209402.06560HepG2XRCC6
PCED1BENSG00000179715.84.9239020.80030-2.078702.418001.78440HepG2ZC3H8
PCED1BENSG00000179715.8138.2506073.555700.910303.436502.10540K562AARS
PCED1BENSG00000179715.859.76810115.69740-0.952903.312301.95930K562ABCF1
PCED1BENSG00000179715.8107.96370175.29740-0.699303.004902.41680K562AGGF1
PCED1BENSG00000179715.850.51020117.87960-1.222704.566603.84720K562AQR
PCED1BENSG00000179715.8277.34940139.636700.989907.436704.39130K562AUH
PCED1BENSG00000179715.8116.6879064.267400.860403.075101.95430K562CCAR1
PCED1BENSG00000179715.8504.19580209.493601.2670017.3164014.51420K562CCDC124
PCED1BENSG00000179715.866.87650167.39900-1.323707.639606.04550K562CELF1
PCED1BENSG00000179715.8374.7495078.210402.2604035.4046033.38910K562EIF2S2
PCED1BENSG00000179715.8136.2820052.447801.377505.612204.06890K562EIF3D
PCED1BENSG00000179715.853.3084088.20860-0.726601.975601.44760K562FXR1
PCED1BENSG00000179715.898.5175036.140401.446703.863401.34310K562FXR2
PCED1BENSG00000179715.817.0594039.47480-1.210401.984801.39860K562G3BP2
PCED1BENSG00000179715.862.64110110.42690-0.817902.769201.62930K562GLRX3
PCED1BENSG00000179715.856.79930104.23810-0.875902.384501.68080K562GRSF1
PCED1BENSG00000179715.835.1118082.89190-1.239303.698702.45480K562HNRNPA1
PCED1BENSG00000179715.8203.78250112.750800.853803.936402.99150K562HSPD1
PCED1BENSG00000179715.847.7560083.49030-0.805902.367201.58690K562MAGOH
PCED1BENSG00000179715.859.46230102.28160-0.782502.076401.31650K562METAP2
PCED1BENSG00000179715.869.80980116.10280-0.733902.448901.68730K562MTPAP
PCED1BENSG00000179715.860.99230105.74560-0.793902.114001.38610K562PCBP3
PCED1BENSG00000179715.842.2884081.10260-0.939502.520901.75880K562POLR2G
PCED1BENSG00000179715.8162.1534081.112300.999305.409304.50780K562PTBP1
PCED1BENSG00000179715.8275.42930154.733700.831804.823203.54250K562PUM2
PCED1BENSG00000179715.8358.57400180.902500.987007.740106.87850K562PUS1
PCED1BENSG00000179715.8164.1857065.850701.318007.492905.85540K562RCC2
PCED1BENSG00000179715.893.1613044.731201.058302.579701.61530K562RPS3
PCED1BENSG00000179715.8124.7027075.078600.731902.591801.58170K562SRSF5
PCED1BENSG00000179715.8154.3881080.483000.939704.268803.38380K562TARDBP
PCED1BENSG00000179715.8248.40140136.764200.860906.166405.14430K562UPF1
PCED1BENSG00000179715.869.88150117.02240-0.743802.466401.63830K562WDR3
PCED1BENSG00000179715.878.27960121.70600-0.636702.194101.43400K562WDR43
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for PCED1B is not available on ENCORE database.






No RBPs affect the alternative splcing events of PCED1B on ENCORE database.





The Knockdown/knockout RNA-Seq assay for PCED1B is not avaliable on ENCORE database.