NR5A1

General Information

Gene Name       : NR5A1
Gene ID             : ENSG00000136931.9
Essential Gene : No

Functions

Localization

Domains (AlphaFold: NR5A1)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878NR5A1ENSG00000136931.90.000.000.00ENCSR000AEF
HepG2NR5A1ENSG00000136931.922.8112.7117.76ENCSR985KAT
K562NR5A1ENSG00000136931.90.010.000.01ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for NR5A1 is not avaliable on ENCORE database.



Proteins bound to RNA
  • NR5A1 RNA is bound by 27 proteins.  







eCLIP assay for NR5A1 is not avaliable on ENCORE database.





27 proteins are bound to NR5A1 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr9127243574127243664-3'-UTR,intron-Distal5.4017720.78052HepG2AKAP1
chr9127243648127243725-3'-UTR,intron-Distal6.2613021.10731HepG2UPF1
chr9127243569127243661-3'-UTR,intron-Distal3.617904.65197HepG2LARP4
chr9127244942127245001-3'-UTR,intron-Distal,intron-Proximal6.3241420.22720HepG2UPF1
chr9127244882127244940-3'-UTR,intron-Distal,intron-Proximal4.8141013.21726HepG2AKAP1
chr9127244455127244504-3'-UTR,intron-Distal4.208443.00640HepG2ZC3H11A
chr9127244675127244816-3'-UTR,intron-Distal5.2341230.65641HepG2UPF1
chr9127244817127244868-3'-UTR,intron-Distal3.193453.57490HepG2NKRF
chr9127244558127244606-3'-UTR,intron-Distal5.3285910.84890HepG2AKAP1
chr9127243755127243810-3'-UTR,intron-Distal5.5420011.27805HepG2UPF1
chr9127243664127243731-3'-UTR,intron-Distal3.9468711.00226HepG2AKAP1
chr9127244807127244872-3'-UTR,intron-Distal6.0774318.04053HepG2AKAP1
chr9127244880127244942-3'-UTR,intron-Distal,intron-Proximal5.0212913.63746HepG2UPF1
chr9127244180127244243-3'-UTR,intron-Distal5.0538216.62638HepG2AKAP1
chr9127244635127244686-3'-UTR,intron-Distal5.6871713.43839HepG2AKAP1
chr9127244688127244807-3'-UTR,intron-Distal5.9456234.68339HepG2AKAP1
chr9127243888127243954-3'-UTR,intron-Distal5.5438012.13480HepG2UPF1
chr9127243849127243939-3'-UTR,intron-Distal5.0879916.06471HepG2AKAP1
chr9127244628127244675-3'-UTR,intron-Distal5.8965315.72143HepG2UPF1
chr9127265682127265738-3'-UTR,5'-UTR,intron-Distal,intron-Proximal4.1396910.65373HepG2SF3B4
chr9127243578127243702-3'-UTR,intron-Distal3.7563811.19473HepG2PCBP2
chr9127244816127244880-3'-UTR,intron-Distal4.6462616.62201HepG2UPF1
chr9127244948127244997-3'-UTR,intron-Distal,intron-Proximal5.495009.17081HepG2AKAP1
chr9127269619127269696-5'-UTR,intron-Distal4.124257.12467HepG2DDX3X
chr9127262333127262372-CDS,intron-Distal,intron-Proximal5.618729.24583HepG2AQR
chr9127262316127262417-CDS,intron-Distal,intron-Proximal3.5802625.90978HepG2PRPF8
chr9127265577127265660-CDS,intron-Distal,intron-Proximal3.233476.93667HepG2PPIG
chr9127262329127262407-CDS,intron-Distal,intron-Proximal3.929123.86417HepG2PRPF4
chr9127262698127262751-CDS,intron-Distal,intron-Proximal3.991215.24699HepG2RBM15
chr9127262922127262994-CDS,intron-Distal4.437709.88154HepG2PPIG
chr9127255395127255436-CDS,intron-Distal,intron-Proximal3.756273.96535HepG2AQR
chr9127265468127265498-CDS,intron-Distal,intron-Proximal4.478934.97342HepG2PPIG
chr9127268864127268920-intron-Distal4.710385.67757HepG2CSTF2T
chr9127261458127261514-intron-Distal3.426146.96229HepG2CSTF2T
chr9127251478127251538-intron-Distal3.110825.52498HepG2CSTF2T
chr9127248630127248669-intron-Distal3.005114.24473HepG2CSTF2T
chr9127253845127253954-intron-Distal4.1932115.72414HepG2CSTF2T
chr9127253251127253299-intron-Distal,intron-Proximal3.283124.41542HepG2FAM120A
chr9127253669127253723-intron-Distal4.457168.84898HepG2FAM120A
chr9127254205127254237-intron-Distal4.096423.45219HepG2RBFOX2
chr9127258661127258745-intron-Distal3.351315.18622HepG2FASTKD2
chr9127254471127254529-intron-Distal4.4302714.43900HepG2FAM120A
chr9127254833127254877-intron-Distal3.186413.91530HepG2PRPF4
chr9127254473127254514-intron-Distal4.500985.54349HepG2GTF2F1
chr9127253255127253300-intron-Distal,intron-Proximal3.319798.62898HepG2CSTF2T
chr9127267300127267369-intron-Distal4.5945712.12734HepG2CSTF2T
chr9127268884127268922-intron-Distal3.863973.38470HepG2NKRF
chr9127250448127250495-intron-Distal3.719365.85439HepG2CSTF2T
chr9127254459127254525-intron-Distal5.4200512.62377HepG2PRPF4
chr9127259083127259154-intron-Distal3.1295512.37925HepG2CSTF2T
chr9127254931127254974-intron-Distal3.637075.18989HepG2PRPF4
chr9127265499127265550-intron-Distal,intron-Proximal5.5171612.65641HepG2SF3A3
chr9127267369127267429-intron-Distal3.578717.44912HepG2CSTF2T
chr9127254375127254431-intron-Distal3.7613910.95399HepG2CSTF2T
chr9127251142127251181-intron-Distal3.565624.60046HepG2CSTF2T
chr9127253723127253773-intron-Distal4.331737.70374HepG2FAM120A
chr9127265705127265773-intron-Distal,intron-Proximal4.882567.09999HepG2CSTF2T
chr9127253664127253723-intron-Distal4.180704.30502HepG2XRN2
chr9127248085127248132-intron-Distal4.042107.72301HepG2CSTF2T
chr9127253676127253721-intron-Distal3.802965.55843HepG2RBFOX2
chr9127258161127258218-intron-Distal3.163678.23490HepG2CSTF2T
chr9127261955127261995-intron-Distal3.449054.51074HepG2RBFOX2
chr9127252127127252248-intron-Distal4.518406.06839HepG2PRPF4
chr9127254887127254931-intron-Distal4.605945.02240HepG2PRPF4
chr9127254862127254934-intron-Distal3.150947.91535HepG2FAM120A
chr9127250272127250321-intron-Distal3.639138.61847HepG2CSTF2T
chr9127254830127254903-intron-Distal3.530313.41847HepG2GTF2F1
chr9127254573127254599-intron-Distal3.956435.16644HepG2FAM120A
chr9127253877127253917-intron-Distal3.651444.83336HepG2FAM120A
chr9127255436127255503-intron-Distal,intron-Proximal3.269514.91041HepG2AQR
chr9127252636127252687-intron-Distal3.155315.45050HepG2CSTF2T
chr9127256627127256657-intron-Distal3.193453.57490HepG2NKRF
chr9127257626127257673-intron-Distal3.608423.19512HepG2FKBP4
chr9127261958127262017-intron-Distal3.746324.48652HepG2PTBP1
chr9127253913127253960-intron-Distal3.326144.24143HepG2RBFOX2
chr9127266243127266339-intron-Distal3.992847.22843HepG2PTBP1
chr9127248552127248595-intron-Distal3.701276.03429HepG2CSTF2T
chr9127257423127257450-intron-Distal3.320223.78913HepG2FKBP4
chr9127255291127255309-intron-Distal,intron-Proximal3.087753.56519HepG2AQR
chr9127259883127259981-intron-Distal3.249836.39462HepG2PRPF4
chr9127254470127254521-intron-Distal4.5850512.84591HepG2CSTF2T
chr9127258602127258654-intron-Distal3.195296.53486HepG2CSTF2T
chr9127257750127257828-intron-Distal3.7681510.41008HepG2CSTF2T
chr9127255010127255041-intron-Distal4.620746.03756HepG2FAM120A
chr9127254934127254980-intron-Distal3.509157.73670HepG2FAM120A
chr9127266226127266297-intron-Distal4.102243.62238HepG2MATR3
chr9127258666127258731-intron-Distal3.664183.54519HepG2FKBP4
chr9127258665127258743-intron-Distal3.0671810.54330HepG2CSTF2T
chr9127259676127259771-intron-Distal3.567284.61945HepG2HNRNPK
chr9127251428127251443-intron-Distal3.418183.48399HepG2CSTF2T
chr9127254369127254438-intron-Distal3.110775.27437HepG2FAM120A
chr9127251901127251947-intron-Distal3.305576.05986HepG2CSTF2T
chr9127253723127253764-intron-Distal4.5509611.88189HepG2CSTF2T
chr9127256345127256486-intron-Distal3.9612611.09177HepG2HNRNPM
chr9127254363127254436-intron-Distal3.440487.20286HepG2PRPF4
chr9127259030127259062-intron-Distal3.044124.24473HepG2CSTF2T
chr9127266622127266669-intron-Distal4.638516.70034HepG2CSTF2T
chr9127257628127257680-intron-Distal3.280028.08135HepG2CSTF2T
chr9127261102127261121-intron-Distal3.441804.25955HepG2RBFOX2
chr9127248957127248974-intron-Distal3.166083.72734HepG2CSTF2T
chr9127254925127254981-intron-Distal5.8645217.19364HepG2CSTF2T
chr9127247791127247839-intron-Distal4.022937.23771HepG2CSTF2T
chr9127267303127267365-intron-Distal4.566483.99130HepG2FAM120A
chr9127257439127257514-intron-Distal3.463547.15148HepG2CSTF2T
chr9127259890127259965-intron-Distal4.366604.97583HepG2GTF2F1
chr9127261648127261728-intron-Distal3.5908214.36832HepG2RBFOX2
chr9127248850127248900-intron-Distal4.022937.23771HepG2CSTF2T
chr9127251192127251211-intron-Distal4.305575.16036HepG2CSTF2T
chr9127256176127256197-intron-Distal3.683894.84557HepG2CSTF2T
chr9127265833127265929-intron-Distal4.444534.27936HepG2PTBP1
chr9127251663127251695-intron-Distal3.303583.23466HepG2CSTF2T
chr9127266064127266094-intron-Distal4.151513.87340HepG2CSTF2T
chr9127255702127255819-intron-Distal3.406866.91567HepG2QKI
chr9127268940127269062-intron-Distal3.106686.99328HepG2NKRF
chr9127257378127257439-intron-Distal4.1539610.29749HepG2CSTF2T
chr9127267117127267162-intron-Distal4.378995.16036HepG2CSTF2T
chr9127251804127251842-intron-Distal3.122584.46520HepG2CSTF2T
chr9127255266127255291-intron-Distal,intron-Proximal4.159954.90219HepG2AQR
chr9127254576127254607-intron-Distal3.797603.25631HepG2PRPF4
chr9127254839127254899-intron-Distal3.388317.76978HepG2CSTF2T
chr9127262011127262089-intron-Distal3.927909.11109HepG2RBFOX2
chr9127255206127255235-intron-Distal,intron-Proximal3.408795.12571HepG2CSTF2T
chr9127253669127253723-intron-Distal4.9827914.35754HepG2CSTF2T
chr9127253711127253757-intron-Distal3.902773.74540HepG2IGF2BP1
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for NR5A1 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for NR5A1 is not available on ENCORE database.

  • 46 RBPs can affect the levels of NR5A1.  








The Knockdown/knockout RNA-Seq assay for NR5A1 is not available on ENCORE database.





46 RBPs can affect the gene expression of NR5A1 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
NR5A1ENSG00000136931.51670.368701300.838800.360602.320001.45430HepG2ABCF1
NR5A1ENSG00000136931.51030.457101562.96560-0.601002.368601.63810HepG2ASCC1
NR5A1ENSG00000136931.52575.733002065.582400.318303.727302.95190HepG2AUH
NR5A1ENSG00000136931.51398.20700783.880400.834805.529904.71890HepG2BOP1
NR5A1ENSG00000136931.51375.38670965.277600.510703.437102.33980HepG2CCAR1
NR5A1ENSG00000136931.51982.592801590.260100.318005.353704.48470HepG2CKAP4
NR5A1ENSG00000136931.5745.08480537.603800.470803.256002.09450HepG2CSTF2
NR5A1ENSG00000136931.51372.207901135.314000.273303.621202.79340HepG2DAZAP1
NR5A1ENSG00000136931.5828.41340586.257200.498707.145106.16600HepG2DNAJC2
NR5A1ENSG00000136931.51949.680402371.61250-0.282604.120003.41130HepG2ETF1
NR5A1ENSG00000136931.5890.575101109.92110-0.317602.416601.68080HepG2FUBP3
NR5A1ENSG00000136931.51106.31380815.644300.439602.533901.91890HepG2GPKOW
NR5A1ENSG00000136931.51557.068401089.147700.515509.338008.11830HepG2HNRNPF
NR5A1ENSG00000136931.51174.628501034.136500.183701.875801.30650HepG2HNRNPL
NR5A1ENSG00000136931.51664.709001072.504900.634207.860506.69770HepG2IGF2BP1
NR5A1ENSG00000136931.52285.704901019.897201.1641016.4883014.48780HepG2LARP4
NR5A1ENSG00000136931.5859.762201062.82110-0.305902.304501.56340HepG2MSI2
NR5A1ENSG00000136931.5678.30350892.50900-0.395903.200001.89070HepG2NAA15
NR5A1ENSG00000136931.5933.84650616.691200.598503.215301.65260HepG2NOLC1
NR5A1ENSG00000136931.51149.99460786.101300.548702.322301.33030HepG2NONO
NR5A1ENSG00000136931.5858.757101047.44890-0.286602.699801.93400HepG2PRPF4
NR5A1ENSG00000136931.51216.170801578.86000-0.376505.283804.57820HepG2PTBP1
NR5A1ENSG00000136931.51759.768201074.702300.711306.917006.02970HepG2PUF60
NR5A1ENSG00000136931.51218.823701620.22320-0.410706.947106.04750HepG2PUS1
NR5A1ENSG00000136931.51187.896801710.02950-0.525607.958006.98270HepG2QKI
NR5A1ENSG00000136931.51230.359301551.92950-0.335003.078302.37110HepG2RBM25
NR5A1ENSG00000136931.51474.680901757.15280-0.252802.862002.31340HepG2NELFE
NR5A1ENSG00000136931.51881.266201173.199900.681209.978108.81760HepG2RPLP0
NR5A1ENSG00000136931.51034.31790692.506000.578703.287202.25830HepG2RPS10
NR5A1ENSG00000136931.5921.31220569.409300.694105.902205.04480HepG2RPS19
NR5A1ENSG00000136931.51127.10770848.255100.410002.790101.98660HepG2RPS2
NR5A1ENSG00000136931.51176.57360865.774600.442402.552301.78320HepG2RPS3A
NR5A1ENSG00000136931.5849.26510587.534700.531407.408006.42690HepG2SAFB2
NR5A1ENSG00000136931.51345.471701030.576400.384606.304205.31370HepG2SLBP
NR5A1ENSG00000136931.5951.43960719.530800.403002.141201.30980HepG2SMNDC1
NR5A1ENSG00000136931.51277.944801715.81380-0.425107.171806.49390HepG2SRSF1
NR5A1ENSG00000136931.51652.453701061.172900.6389014.4641013.19300HepG2SRSF5
NR5A1ENSG00000136931.51551.334501070.033400.5358010.094908.91070HepG2SRSF7
NR5A1ENSG00000136931.52464.983001943.800700.342605.796505.10590HepG2SSB
NR5A1ENSG00000136931.51450.128301206.793700.264903.423702.74590HepG2SUCLG1
NR5A1ENSG00000136931.5875.229701542.15920-0.8172017.9040016.65610HepG2TAF15
NR5A1ENSG00000136931.51064.639901417.12030-0.412604.538503.47520HepG2TIA1
NR5A1ENSG00000136931.51534.00360640.992101.2588028.8847027.58460HepG2TIAL1
NR5A1ENSG00000136931.51534.537301050.021700.547307.333805.80320HepG2TUFM
NR5A1ENSG00000136931.5767.646301123.47080-0.549404.541303.74660HepG2U2AF1
NR5A1ENSG00000136931.51284.471201033.661100.313304.057803.26820HepG2ZC3H8
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for NR5A1 is not available on ENCORE database.





7 RBPs can affect the splicing of NR5A1 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SENR5A1ENSG00000136931.5chr9-127255308127255428127253359127253507127262368127262994-0.147000.002060.04814excludedHepG2HNRNPK
SENR5A1ENSG00000136931.5chr9-1272533591272535071272450061272452841272623681272625510.098000.001020.07511includedHepG2TBRG4
SENR5A1ENSG00000136931.5chr9-1272653571272654991272627051272629941272655721272656890.113000.001360.01835includedHepG2U2AF2
SENR5A1ENSG00000136931.5chr9-127262368127262994127243515127245284127265357127265499-0.107000.002820.06818excludedHepG2SF3A3
SENR5A1ENSG00000136931.5chr9-1272653571272654991272627051272629941272655721272656890.116000.000030.00764includedHepG2RBFOX2
SENR5A1ENSG00000136931.5chr9-127253359127253507127243515127245284127262368127262551-0.209000.000480.02692excludedHepG2PCBP1
MXENR5A1ENSG00000136931.5chr9-127262368127262994127265357127265499127243515127245284127265572127265689-0.096000.001300.044242includedHepG2SF3A3
MXENR5A1ENSG00000136931.5chr9-1272623681272629941272653571272654991272553081272554281272655721272656890.252000.001650.012411includedHepG2U2AF2
MXENR5A1ENSG00000136931.5chr9-1272623681272629941272653571272654991272435151272452841272655721272656890.359000.003400.048851includedHepG2HNRNPUL1
MXENR5A1ENSG00000136931.5chr9-1272623681272629941272653571272654991272553081272554281272655721272656890.266000.003580.049841includedHepG2HNRNPUL1

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for NR5A1 is not avaliable on ENCORE database.