NDST2

General Information

Gene Name       : NDST2
Gene ID             : ENSG00000166507.17
Essential Gene : No

Functions

Localization

Domains (AlphaFold: NDST2)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878NDST2ENSG00000166507.1714.2811.3312.80ENCSR000AEF
HepG2NDST2ENSG00000166507.1710.2010.6110.40ENCSR985KAT
K562NDST2ENSG00000166507.1716.3615.2115.79ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for NDST2 is not avaliable on ENCORE database.



Proteins bound to RNA
  • NDST2 RNA is bound by 15 proteins.  







eCLIP assay for NDST2 is not avaliable on ENCORE database.





15 proteins are bound to NDST2 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr107556180075561893-3'-UTR,intron-Distal4.098563.80315HepG2LSM11
chr107556810775568167-5'-UTR,CDS,intron-Distal,intron-Proximal4.382388.85307HepG2PCBP2
chr107557143875571571-5'-UTR,intron-Distal,intron-Proximal3.434834.35138HepG2NCBP2
chr107556813975568240-5'-UTR,CDS,intron-Distal,intron-Proximal4.152338.12409K562PCBP1
chr107556835075568421-5'-UTR,intron-Distal4.482715.35746HepG2DDX3X
chr107557136675571469-5'-UTR,intron-Distal,intron-Proximal5.038398.88833HepG2DDX3X
chr107556812375568243-5'-UTR,CDS,intron-Distal,intron-Proximal3.391638.16053HepG2DDX59
chr107557146975571550-5'-UTR,intron-Distal,intron-Proximal4.912628.88833HepG2DDX3X
chr107556810375568254-5'-UTR,CDS,intron-Distal,intron-Proximal4.041927.85389K562HNRNPK
chr107556828575568347-5'-UTR,intron-Distal5.018184.57427HepG2PCBP2
chr107556819375568253-5'-UTR,intron-Distal,intron-Proximal4.9677310.00855HepG2PCBP2
chr107556714975567205-CDS,intron-Distal3.217413.34848HepG2PPIG
chr107556749875567561-CDS,intron-Distal3.954833.28989K562RBM15
chr107556619975566294-CDS,intron-Distal,intron-Proximal3.852164.93376K562PRPF8
chr107556308275563129-CDS,intron-Distal,intron-Proximal4.055255.67291HepG2U2AF2
chr107556365075563754-CDS,intron-Distal,intron-Proximal3.931524.01763HepG2GRWD1
chr107556622875566253-CDS,intron-Distal,intron-Proximal3.464894.88100K562AQR
chr107556268475562752-CDS,intron-Distal,intron-Proximal3.508394.23459K562PRPF8
chr107556268675562722-intron-Distal,intron-Proximal4.977347.48549HepG2RBFOX2
chr107556267175562686-intron-Distal,intron-Proximal4.776726.37401HepG2RBFOX2
chr107556665375566706-intron-Distal,intron-Proximal3.872203.28461K562BUD13
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for NDST2 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for NDST2 is not available on ENCORE database.

  • 50 RBPs can affect the levels of NDST2.  








The Knockdown/knockout RNA-Seq assay for NDST2 is not available on ENCORE database.





50 RBPs can affect the gene expression of NDST2 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
NDST2ENSG00000166507.12268.93060425.16580-0.660806.418805.57190HepG2ACO1
NDST2ENSG00000166507.12429.12940595.89090-0.473602.440101.93730HepG2AKAP1
NDST2ENSG00000166507.12346.40970468.43550-0.435402.257101.55460HepG2CIRBP
NDST2ENSG00000166507.12513.92220373.811500.459102.841802.14640HepG2CPSF6
NDST2ENSG00000166507.12282.43050423.77640-0.585403.123902.44840HepG2GPKOW
NDST2ENSG00000166507.12542.30670403.365600.426902.503801.84100HepG2HNRNPC
NDST2ENSG00000166507.12566.23380400.698400.498804.953904.16210HepG2HNRNPU
NDST2ENSG00000166507.12676.93690541.283800.322502.315701.61840HepG2NOL12
NDST2ENSG00000166507.12382.88830487.72080-0.349102.369301.64680HepG2PRPF4
NDST2ENSG00000166507.12417.83750551.67810-0.400903.088602.51640HepG2PTBP1
NDST2ENSG00000166507.12366.31620584.15580-0.673306.772906.04710HepG2RBM22
NDST2ENSG00000166507.12491.11900613.98090-0.322102.287601.78590HepG2NELFE
NDST2ENSG00000166507.12418.67740219.712600.930102.719301.42320HepG2SNRNP200
NDST2ENSG00000166507.12478.88760659.77000-0.462304.509403.91450HepG2SRFBP1
NDST2ENSG00000166507.12416.20160599.53820-0.526604.941504.35610HepG2SRSF1
NDST2ENSG00000166507.12332.10150487.74400-0.554505.318904.59850HepG2SRSF9
NDST2ENSG00000166507.12690.18470580.210700.250301.882601.35120HepG2SUCLG1
NDST2ENSG00000166507.12398.13180538.84880-0.436603.352502.74410HepG2TAF15
NDST2ENSG00000166507.12276.16200519.95910-0.912907.911206.85390HepG2U2AF1
NDST2ENSG00000166507.12396.21070488.13820-0.301001.809501.30280HepG2UTP3
NDST2ENSG00000166507.12375.85980513.24170-0.449402.842001.64320K562AARS
NDST2ENSG00000166507.12625.201301015.17110-0.6993011.5387010.47370K562AGGF1
NDST2ENSG00000166507.12871.244301115.48920-0.356502.770801.78800K562AKAP8
NDST2ENSG00000166507.12590.122301056.32410-0.8400011.5677010.10570K562AKAP8L
NDST2ENSG00000166507.12478.40700746.87520-0.642605.246804.48340K562AQR
NDST2ENSG00000166507.12771.461801108.32410-0.522706.791505.27510K562ATP5C1
NDST2ENSG00000166507.12886.83650634.040000.484002.903002.10090K562CPSF6
NDST2ENSG00000166507.12900.190301191.07310-0.404003.284301.68190K562DDX19B
NDST2ENSG00000166507.12539.76530400.370000.430903.018101.92840K562DDX3X
NDST2ENSG00000166507.12899.595301136.72730-0.337502.730901.86390K562DKC1
NDST2ENSG00000166507.121151.06020636.835400.8539017.0782015.51250K562EIF2S2
NDST2ENSG00000166507.12708.44030546.688600.373802.163201.35930K562FTO
NDST2ENSG00000166507.12157.03270291.22560-0.891105.022404.00530K562G3BP2
NDST2ENSG00000166507.121232.02760912.585500.432903.671002.75890K562HSPD1
NDST2ENSG00000166507.12706.984301121.05010-0.665107.744306.19180K562KIF1C
NDST2ENSG00000166507.12715.42230516.832900.469002.496301.61240K562KRR1
NDST2ENSG00000166507.12321.35090457.64080-0.510103.629702.65900K562MAGOH
NDST2ENSG00000166507.12825.122401073.09950-0.379102.841301.74830K562MAK16
NDST2ENSG00000166507.12884.039001255.85560-0.506505.755104.35550K562MBNL1
NDST2ENSG00000166507.12538.89420880.26150-0.707904.197603.04530K562NAA15
NDST2ENSG00000166507.121003.09270753.042200.413602.728301.90210K562PCBP3
NDST2ENSG00000166507.12757.11630577.594600.390403.151402.29290K562POLR2G
NDST2ENSG00000166507.12297.07590413.09190-0.475602.559101.83780K562PRPF8
NDST2ENSG00000166507.12784.590001084.84850-0.467504.203703.20390K562PUF60
NDST2ENSG00000166507.121424.597801130.604000.333403.781302.65560K562PUM2
NDST2ENSG00000166507.12408.400301047.63730-1.3591023.1043021.55390K562PUS1
NDST2ENSG00000166507.12508.170901020.72030-1.0062019.0226017.43460K562RBM15
NDST2ENSG00000166507.12948.17090729.619600.377903.715302.77760K562SF3A3
NDST2ENSG00000166507.12335.87650435.87810-0.376002.027301.41150K562SRSF1
NDST2ENSG00000166507.12209.70430291.56050-0.475402.468701.70940K562U2AF2
NDST2ENSG00000166507.121026.11950784.032100.388104.492003.59910K562UPF1
NDST2ENSG00000166507.12621.054701062.14080-0.774203.973202.32720K562UTP18
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for NDST2 is not available on ENCORE database.





2 RBPs can affect the splicing of NDST2 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
A3SSNDST2ENSG00000166507.12chr10-7556686575566994755668657556695375567141755684870.067000.000950.00664longerK562AQR
A3SSNDST2ENSG00000166507.12chr10-7556641475566620755664147556656975566865755669530.439000.000070.00501longerK562PUS1

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for NDST2 is not avaliable on ENCORE database.