EFTUD1

General Information

Gene Name       : EFTUD1
Gene ID             :
Essential Gene : No

Functions

Localization

Domains (AlphaFold: EFTUD1)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for EFTUD1 is not avaliable on ENCORE database.



Proteins bound to RNA
  • EFTUD1 RNA is bound by 4 proteins.  







eCLIP assay for EFTUD1 is not avaliable on ENCORE database.





4 proteins are bound to EFTUD1 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr158253061582530676-CDS,intron-Distal,intron-Proximal5.529697.02967HepG2PRPF8
chr158251796082518070-intron-Distal3.770073.02234K562KHSRP
chr158245754682457639-intron-Distal4.635804.67693K562PTBP1
chr158250653182506700-intron-Distal3.374794.56724K562KHSRP
chr158250797482508043-intron-Distal,intron-Proximal4.553614.20763HepG2U2AF2
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for EFTUD1 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for EFTUD1 is not available on ENCORE database.

  • 52 RBPs can affect the levels of EFTUD1.  








The Knockdown/knockout RNA-Seq assay for EFTUD1 is not available on ENCORE database.





52 RBPs can affect the gene expression of EFTUD1 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
EFTUD1ENSG00000140598.9498.64000372.395000.421103.156102.51380HepG2ACO1
EFTUD1ENSG00000140598.9992.91100590.732600.749106.434405.66060HepG2AKAP1
EFTUD1ENSG00000140598.9741.20960473.756500.645605.148503.74330HepG2AKAP8
EFTUD1ENSG00000140598.9486.80550374.094600.379802.708201.94880HepG2AKAP8L
EFTUD1ENSG00000140598.9697.75940497.118600.489004.006903.10210HepG2CALR
EFTUD1ENSG00000140598.9628.67800503.912100.319002.365801.76390HepG2CELF1
EFTUD1ENSG00000140598.9256.81490356.26550-0.472202.908402.21420HepG2DKC1
EFTUD1ENSG00000140598.9264.29610383.88380-0.538504.485303.69050HepG2DNAJC2
EFTUD1ENSG00000140598.9312.83610516.47380-0.723304.836303.99480HepG2EIF4A3
EFTUD1ENSG00000140598.9808.66200512.200700.658704.309903.36670HepG2FIP1L1
EFTUD1ENSG00000140598.9393.69580521.01590-0.404202.074901.47200HepG2FXR1
EFTUD1ENSG00000140598.9326.20260513.09380-0.653504.534803.38290HepG2G3BP2
EFTUD1ENSG00000140598.9511.20160355.153700.525303.597802.43010HepG2GNB2L1
EFTUD1ENSG00000140598.9301.80220434.92030-0.527103.109002.37940HepG2HNRNPC
EFTUD1ENSG00000140598.9333.22010432.04460-0.374702.463701.89020HepG2HNRNPU
EFTUD1ENSG00000140598.9541.07020724.03620-0.420202.208501.47350HepG2LARP4
EFTUD1ENSG00000140598.9244.39020365.36680-0.580203.060501.78350HepG2LIN28B
EFTUD1ENSG00000140598.9362.62950521.19740-0.523303.131002.43370HepG2MAGOH
EFTUD1ENSG00000140598.9379.68460524.12830-0.465102.355301.77030HepG2MATR3
EFTUD1ENSG00000140598.9581.35510414.366100.488403.196902.32920HepG2MSI2
EFTUD1ENSG00000140598.9944.63830309.267401.6108016.5838014.37130HepG2PABPC1
EFTUD1ENSG00000140598.9614.64830477.826800.363201.930101.31830HepG2PABPC4
EFTUD1ENSG00000140598.9374.71040473.32700-0.337102.126301.58250HepG2PCBP1
EFTUD1ENSG00000140598.9496.68300382.598000.376402.690301.92570HepG2PRPF4
EFTUD1ENSG00000140598.9377.07280481.64100-0.353102.387601.87320HepG2PTBP1
EFTUD1ENSG00000140598.9301.98020512.86190-0.764106.825005.94440HepG2PUF60
EFTUD1ENSG00000140598.9869.63390511.689300.7650011.2219010.33060HepG2RBM22
EFTUD1ENSG00000140598.9355.68680473.39710-0.412402.427201.79220HepG2RBM25
EFTUD1ENSG00000140598.9396.80980499.23960-0.331302.040901.50050HepG2RECQL
EFTUD1ENSG00000140598.9274.11820399.33690-0.542802.140301.30840HepG2RPS10
EFTUD1ENSG00000140598.9558.37330435.395600.358801.915901.32210HepG2SF3B1
EFTUD1ENSG00000140598.91011.79830577.927000.8079015.8940014.95300HepG2SRFBP1
EFTUD1ENSG00000140598.9659.19000523.390800.332702.516002.05990HepG2SRSF1
EFTUD1ENSG00000140598.9402.18730501.76500-0.319102.176601.70810HepG2SSB
EFTUD1ENSG00000140598.9255.45620419.79500-0.716606.066905.37850HepG2TIAL1
EFTUD1ENSG00000140598.9382.34790501.05780-0.390102.253001.47050HepG2TUFM
EFTUD1ENSG00000140598.9774.44010438.054400.821907.693606.64980HepG2U2AF1
EFTUD1ENSG00000140598.9465.07980377.563100.300701.933401.35640HepG2ZC3H8
EFTUD1ENSG00000140598.9610.31100509.579500.260101.951301.47010HepG2ZNF622
EFTUD1ENSG00000140598.9904.065401062.49120-0.233001.855401.37200K562AGGF1
EFTUD1ENSG00000140598.91608.253701278.201900.331304.338503.54890K562DDX47
EFTUD1ENSG00000140598.9476.66840613.92770-0.365102.822101.49930K562DDX6
EFTUD1ENSG00000140598.9720.72470940.44390-0.383903.864303.03640K562EIF2S2
EFTUD1ENSG00000140598.9453.88460632.62460-0.479003.634102.69670K562EIF4A3
EFTUD1ENSG00000140598.9837.313101253.23850-0.581806.823805.62710K562GRSF1
EFTUD1ENSG00000140598.9696.28920877.36650-0.333502.434601.64290K562MAGOH
EFTUD1ENSG00000140598.9508.08240676.30790-0.412602.532001.67260K562PSIP1
EFTUD1ENSG00000140598.9684.63820852.41910-0.316202.352201.73250K562PTBP1
EFTUD1ENSG00000140598.91379.980001793.68660-0.378304.430103.21070K562PUM2
EFTUD1ENSG00000140598.9884.049601096.42930-0.310602.080301.59700K562PUS1
EFTUD1ENSG00000140598.9786.36310579.186000.441102.683301.88140K562RPS19
EFTUD1ENSG00000140598.9579.65040789.22660-0.445303.381102.20060K562SRSF5
EFTUD1ENSG00000140598.9476.17560845.73280-0.828709.579908.13940K562TARDBP
EFTUD1ENSG00000140598.9659.01930815.80700-0.307902.100101.39420K562TIA1
EFTUD1ENSG00000140598.9476.55270650.50700-0.448902.698401.77540K562TIAL1
EFTUD1ENSG00000140598.9845.960701081.63350-0.354504.158803.29590K562UPF1
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for EFTUD1 is not available on ENCORE database.





3 RBPs can affect the splicing of EFTUD1 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SEEFTUD1ENSG00000140598.9chr15-825450318254511682533610825337448255142882551496-0.158000.003720.05903excludedK562SF3B4
SEEFTUD1ENSG00000140598.9chr15-8255447782554689825540288255413882554954825550020.138000.007680.08593includedK562PUS1
MXEEFTUD1ENSG00000140598.9chr15-8253361082533744825514288255149682532758825328968255402882554138-0.229000.001250.091552includedK562NPM1

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for EFTUD1 is not avaliable on ENCORE database.