CTBS

General Information

Gene Name       : CTBS
Gene ID             : ENSG00000117151.12
Essential Gene : No

Functions

Localization

Domains (AlphaFold: CTBS)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878CTBSENSG00000117151.1212.858.9210.88ENCSR000AEF
HepG2CTBSENSG00000117151.122.505.353.92ENCSR985KAT
K562CTBSENSG00000117151.127.697.767.72ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for CTBS is not avaliable on ENCORE database.



Proteins bound to RNA
  • CTBS RNA is bound by 4 proteins.  







eCLIP assay for CTBS is not avaliable on ENCORE database.





4 proteins are bound to CTBS RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr18502072585020849-3'-UTR,CDS,intron-Distal3.159623.90824K562YBX3
chr18502017985020244-3'-UTR,intron-Distal,intron-Proximal4.554294.46951K562FAM120A
chr18501974285019797-3'-UTR,intron-Distal4.419593.19904K562TIA1
chr18503994385040040-CDS,intron-Distal6.017486.75859HepG2DDX3X
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for CTBS is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for CTBS is not available on ENCORE database.

  • 76 RBPs can affect the levels of CTBS.  








The Knockdown/knockout RNA-Seq assay for CTBS is not available on ENCORE database.





76 RBPs can affect the gene expression of CTBS :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
CTBSENSG00000117151.8287.56990204.124600.494402.960002.33410HepG2ACO1
CTBSENSG00000117151.8454.04420319.373000.507503.868903.08230HepG2AUH
CTBSENSG00000117151.8230.61730130.641500.819803.551002.53790HepG2BCLAF1
CTBSENSG00000117151.8320.95530216.993200.564603.206502.38190HepG2CALR
CTBSENSG00000117151.8253.69200374.16450-0.560602.949302.15190HepG2CIRBP
CTBSENSG00000117151.8461.80070166.462501.472008.507207.35810HepG2CPSF6
CTBSENSG00000117151.8347.62140268.943000.370101.973701.41300HepG2CELF1
CTBSENSG00000117151.8375.86770289.195100.378102.372401.67800HepG2DAZAP1
CTBSENSG00000117151.8386.31950239.620900.688904.662603.36730HepG2DDX5
CTBSENSG00000117151.8327.67840195.294800.746503.280102.55200HepG2DKC1
CTBSENSG00000117151.8305.07630201.728600.596702.493901.82210HepG2DNAJC21
CTBSENSG00000117151.8240.49860145.442900.725503.672802.38440HepG2EFTUD2
CTBSENSG00000117151.8491.12110273.297200.845507.360306.06020HepG2EIF4G2
CTBSENSG00000117151.8320.06420228.510200.486002.456201.42580HepG2ESF1
CTBSENSG00000117151.8233.71340123.050200.925404.353202.78690HepG2FKBP4
CTBSENSG00000117151.8328.61740166.718200.978903.546902.39150HepG2FTO
CTBSENSG00000117151.8212.97240419.78810-0.979007.953906.82950HepG2FXR1
CTBSENSG00000117151.8444.17630240.197200.886804.527702.72290HepG2HLTF
CTBSENSG00000117151.8425.06490265.771200.677405.995504.71370HepG2HNRNPA2B1
CTBSENSG00000117151.8140.01890226.51150-0.694002.013301.41140HepG2HNRNPC
CTBSENSG00000117151.8592.08080180.111901.7168016.8536015.48750HepG2HNRNPLL
CTBSENSG00000117151.8110.95870183.79880-0.728103.016102.02440HepG2HNRNPM
CTBSENSG00000117151.8331.22240225.015600.557702.416501.84690HepG2HNRNPU
CTBSENSG00000117151.8323.29730229.850000.492102.057401.41430HepG2ILF2
CTBSENSG00000117151.8496.78660293.596900.758704.538202.82290HepG2ILF3
CTBSENSG00000117151.8227.78360323.11120-0.504402.062801.35440HepG2LARP4
CTBSENSG00000117151.8354.08040183.605500.947402.950601.94620HepG2MTPAP
CTBSENSG00000117151.8241.25250432.25630-0.841306.001805.08520HepG2NCBP2
CTBSENSG00000117151.8199.91210286.76450-0.520502.599801.86140HepG2NOL12
CTBSENSG00000117151.8300.66780159.675300.912904.280903.35570HepG2NSUN2
CTBSENSG00000117151.8283.75200184.154500.623603.112201.33130HepG2PHF6
CTBSENSG00000117151.8243.67810114.017101.095605.987004.84930HepG2PRPF8
CTBSENSG00000117151.8270.69960374.18320-0.467102.904202.34630HepG2PTBP1
CTBSENSG00000117151.8434.62220273.737500.666904.920104.15290HepG2PUF60
CTBSENSG00000117151.8402.33780290.579400.469403.482802.83260HepG2PUM1
CTBSENSG00000117151.8422.08460290.370300.539503.627802.86440HepG2PUM2
CTBSENSG00000117151.8280.23890207.915800.430602.310801.73500HepG2PUS1
CTBSENSG00000117151.8593.60440405.218700.550704.809804.01950HepG2QKI
CTBSENSG00000117151.8244.59530416.41790-0.767606.607505.83180HepG2NELFE
CTBSENSG00000117151.8362.02850224.986200.686203.327702.29180HepG2RPS10
CTBSENSG00000117151.8196.19490112.783400.798602.969202.15790HepG2RRP9
CTBSENSG00000117151.8336.76250178.297700.917305.107004.17050HepG2SF3B1
CTBSENSG00000117151.8362.80330262.461300.467003.151202.41030HepG2SLBP
CTBSENSG00000117151.8377.77570233.436700.694403.837602.69500HepG2SMNDC1
CTBSENSG00000117151.8467.58300198.379401.236907.145705.88460HepG2SNRNP70
CTBSENSG00000117151.8271.53340346.15650-0.350301.842801.40870HepG2SRFBP1
CTBSENSG00000117151.8379.26530300.546400.335501.948901.49910HepG2SSB
CTBSENSG00000117151.8478.15160317.341700.591303.282301.82930HepG2SUGP2
CTBSENSG00000117151.8311.95680179.899900.794105.419804.12660HepG2SUPT6H
CTBSENSG00000117151.8290.42640147.166400.980604.943104.07950HepG2SUPV3L1
CTBSENSG00000117151.8194.5492098.634800.979904.390703.17520HepG2TFIP11
CTBSENSG00000117151.8328.85810218.731300.588202.589602.10330HepG2TIAL1
CTBSENSG00000117151.8365.66310267.421800.451302.383701.57720HepG2TUFM
CTBSENSG00000117151.8135.2830086.929400.638002.010701.36370HepG2UCHL5
CTBSENSG00000117151.8323.10110245.382900.396902.282701.63820HepG2UPF1
CTBSENSG00000117151.8139.83610236.90630-0.760604.624303.88160HepG2UTP3
CTBSENSG00000117151.8355.90360225.228400.660002.887301.59850HepG2XRCC5
CTBSENSG00000117151.8370.85980251.912200.557902.519301.51120HepG2XRCC6
CTBSENSG00000117151.8363.60670269.873000.430002.949602.39090HepG2ZNF622
CTBSENSG00000117151.8652.45560806.69660-0.306101.888401.34480K562AKAP8L
CTBSENSG00000117151.8428.82510604.06820-0.494303.049402.43950K562AQR
CTBSENSG00000117151.8391.01780570.20010-0.544205.403404.53690K562DDX47
CTBSENSG00000117151.8409.87700290.468000.496703.544302.74560K562EIF2S2
CTBSENSG00000117151.8217.39790374.72840-0.785506.481005.27780K562EIF3G
CTBSENSG00000117151.8524.32360667.88330-0.349102.726101.79440K562EIF4G2
CTBSENSG00000117151.8262.98180445.10610-0.759205.962705.12370K562FXR1
CTBSENSG00000117151.8702.49630440.714300.672504.680503.70700K562G3BP2
CTBSENSG00000117151.8188.96150342.91470-0.859806.180705.32360K562HNRNPC
CTBSENSG00000117151.8193.72710306.21350-0.660503.877702.50140K562HNRNPF
CTBSENSG00000117151.8705.59550516.959600.448702.922001.65270K562HNRNPK
CTBSENSG00000117151.8187.59790279.85510-0.577002.577701.68310K562HNRNPM
CTBSENSG00000117151.8381.83030542.84140-0.507603.914102.80220K562MATR3
CTBSENSG00000117151.8298.46800509.79060-0.772303.267602.16600K562PABPN1
CTBSENSG00000117151.8364.06330244.805900.572502.036601.32420K562PCBP3
CTBSENSG00000117151.8266.28790187.776600.503902.375701.63470K562POLR2G
CTBSENSG00000117151.8287.53750386.24350-0.425802.196101.46880K562PPIG
CTBSENSG00000117151.8418.72740528.42030-0.335701.909901.33970K562PTBP1
CTBSENSG00000117151.8353.19420506.82990-0.521003.681602.70050K562RBM22
CTBSENSG00000117151.8257.24450418.31570-0.701505.435003.48510K562RBM25
CTBSENSG00000117151.8341.57200458.54570-0.424902.783701.92560K562SF3B4
CTBSENSG00000117151.8562.22020436.907200.363702.816602.09180K562UPF1
CTBSENSG00000117151.8262.40740388.77950-0.567103.828102.84340K562WDR43
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for CTBS is not available on ENCORE database.





4 RBPs can affect the splicing of CTBS :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SECTBSENSG00000117151.8chr1-850356138503582285031523850317138503626485036403-0.278000.004580.04327excludedK562AQR
SECTBSENSG00000117151.8chr1-8503561385035822850315238503169585036264850364030.206000.001410.07163includedHepG2NCBP2
SECTBSENSG00000117151.8chr1-850356138503582285031523850316958503626485036403-0.227000.005220.07518excludedK562U2AF2
SECTBSENSG00000117151.8chr1-8503561385035822850315238503169585036264850364030.219000.000100.00682includedHepG2HNRNPU
A3SSCTBSENSG00000117151.8chr1-8502941785029631850294178502951585031523850317090.087000.017120.08361longerK562AQR
A3SSCTBSENSG00000117151.8chr1-8503152385031713850315238503169585036264850364030.209000.005540.03166longerK562AQR

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for CTBS is not avaliable on ENCORE database.