CTB-25B13.12

General Information

Gene Name       : CTB-25B13.12
Gene ID             :
Essential Gene : No

Functions

Localization

Domains (AlphaFold: CTB-25B13.12)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for CTB-25B13.12 is not avaliable on ENCORE database.



Proteins bound to RNA
  • CTB-25B13.12 RNA is bound by 4 proteins.  







eCLIP assay for CTB-25B13.12 is not avaliable on ENCORE database.





4 proteins are bound to CTB-25B13.12 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr1914612551461346-3'-UTR,intron-Distal4.067929.37242K562UPF1
chr1914614221461479-3'-UTR,intron-Distal3.459694.58535K562AKAP1
chr1914584541458505-intron-Distal3.8019412.41732K562AKAP1
chr1914603611460408-intron-Distal4.7244310.23575K562UPF1
chr1914591041459114-intron-Distal4.685435.60103K562UPF1
chr1914605131460559-intron-Distal5.8955914.12857K562UPF1
chr1914605741460631-intron-Distal5.9539412.33273K562UPF1
chr1914589441459004-intron-Distal3.479544.69646HepG2UPF1
chr1914600561460108-intron-Distal3.934189.13151K562UPF1
chr1914585111458585-intron-Distal3.8156414.04342K562AKAP1
chr1914594741459531-intron-Distal3.720939.30182K562UPF1
chr1914611451461239-3'-UTR,intron-Distal4.868346.23064HepG2UPF1
chr1914599831460045-intron-Distal3.222843.52299HepG2AKAP1
chr1914611651461255-3'-UTR,intron-Distal4.5211112.41920K562UPF1
chr1914611541461247-3'-UTR,intron-Distal3.925256.98960K562RBM15
chr1914614251461454-3'-UTR,intron-Distal4.190133.20319K562UPF1
chr1914611371461192-3'-UTR,intron-Distal,intron-Proximal3.976323.61011HepG2AKAP1
chr1914610401461081-intron-Distal,intron-Proximal5.429347.64609K562AKAP1
chr1914603121460356-intron-Distal4.7464210.92855K562UPF1
chr1914587981458846-intron-Distal5.7028910.90122K562UPF1
chr1914582651458323-intron-Distal5.1109915.12816K562UPF1
chr1914607971460859-intron-Distal4.328034.49605HepG2UPF1
chr1914599961460056-intron-Distal4.1854313.25367K562UPF1
chr1914614891461543-3'-UTR,intron-Distal4.011093.79142K562AKAP1
chr1914599091459992-intron-Distal3.957647.72891K562AKAP1
chr1914587991458842-intron-Distal3.160823.48322HepG2UPF1
chr1914584611458569-intron-Distal4.3348822.28908K562UPF1
chr1914600211460121-intron-Distal3.627583.84715HepG2HNRNPK
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for CTB-25B13.12 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for CTB-25B13.12 is not available on ENCORE database.

  • 57 RBPs can affect the levels of CTB-25B13.12.  








The Knockdown/knockout RNA-Seq assay for CTB-25B13.12 is not available on ENCORE database.





57 RBPs can affect the gene expression of CTB-25B13.12 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
CTB-25B13.12ENSG00000267317.172.0296040.853300.818001.797901.30610HepG2BOP1
CTB-25B13.12ENSG00000267317.1102.8908059.866700.781202.613801.96330HepG2CKAP4
CTB-25B13.12ENSG00000267317.176.5416037.505101.029102.269201.63860HepG2CPSF6
CTB-25B13.12ENSG00000267317.196.2954055.379100.798002.850702.00440HepG2DDX19B
CTB-25B13.12ENSG00000267317.195.2110052.726400.852502.514701.64860HepG2EIF3D
CTB-25B13.12ENSG00000267317.180.49560134.50180-0.740602.883502.27180HepG2ETF1
CTB-25B13.12ENSG00000267317.1107.6583058.513000.879502.985902.12120HepG2EWSR1
CTB-25B13.12ENSG00000267317.194.9291057.167200.731602.315601.41640HepG2HDGF
CTB-25B13.12ENSG00000267317.1127.8164077.261800.726102.184901.56050HepG2HNRNPC
CTB-25B13.12ENSG00000267317.129.0693076.75100-1.400704.859604.07450HepG2HNRNPU
CTB-25B13.12ENSG00000267317.1176.3405087.324301.013805.143604.18740HepG2IGF2BP1
CTB-25B13.12ENSG00000267317.180.52490128.36620-0.672801.898901.32940HepG2IGF2BP2
CTB-25B13.12ENSG00000267317.1133.3872078.398800.766603.508402.69110HepG2ILF2
CTB-25B13.12ENSG00000267317.187.30170140.15130-0.682902.069801.51800HepG2NCBP2
CTB-25B13.12ENSG00000267317.171.52870124.83770-0.803502.633201.92770HepG2PABPC4
CTB-25B13.12ENSG00000267317.139.1791091.10610-1.217504.452503.49580HepG2PRPF4
CTB-25B13.12ENSG00000267317.178.43530122.88120-0.647701.983901.50690HepG2PTBP1
CTB-25B13.12ENSG00000267317.183.84780133.06770-0.666302.140801.57980HepG2QKI
CTB-25B13.12ENSG00000267317.189.56560136.74890-0.610501.813801.35590HepG2NELFE
CTB-25B13.12ENSG00000267317.1232.3509095.560001.281708.176407.10000HepG2RPLP0
CTB-25B13.12ENSG00000267317.1101.4499051.299200.983703.138402.48960HepG2RPS19
CTB-25B13.12ENSG00000267317.148.93480133.52820-1.448206.988606.32000HepG2SRSF1
CTB-25B13.12ENSG00000267317.1180.6693087.133301.052006.138505.16700HepG2SRSF7
CTB-25B13.12ENSG00000267317.1156.0023074.581401.064605.452604.79850HepG2TIAL1
CTB-25B13.12ENSG00000267317.1121.6063075.244400.692502.509001.96660HepG2TRIM56
CTB-25B13.12ENSG00000267317.144.8169084.31680-0.911802.295801.71870HepG2U2AF1
CTB-25B13.12ENSG00000267317.123.4376081.46140-1.797306.220405.38130HepG2UTP3
CTB-25B13.12ENSG00000267317.1222.0075089.917101.3038010.591909.41960HepG2ZC3H8
CTB-25B13.12ENSG00000267317.1123.72050253.16730-1.033007.639806.76350K562AGGF1
CTB-25B13.12ENSG00000267317.1190.83790278.16170-0.543602.311601.42550K562AKAP8
CTB-25B13.12ENSG00000267317.1119.37990263.42440-1.141808.532607.32210K562AKAP8L
CTB-25B13.12ENSG00000267317.1196.10920276.38130-0.495002.460301.60270K562ATP5C1
CTB-25B13.12ENSG00000267317.1181.22680112.135800.692402.992001.65580K562CIRBP
CTB-25B13.12ENSG00000267317.1314.60060206.236900.609102.304401.35210K562CNOT7
CTB-25B13.12ENSG00000267317.1218.09630137.796600.662302.621701.85750K562CPSF6
CTB-25B13.12ENSG00000267317.1214.30610283.51130-0.403702.164801.40090K562DKC1
CTB-25B13.12ENSG00000267317.1254.99790163.116100.644502.771801.73490K562EIF3D
CTB-25B13.12ENSG00000267317.1230.1911099.584901.208708.468707.03150K562EIF4A3
CTB-25B13.12ENSG00000267317.1315.50080214.073100.559403.067602.17260K562FIP1L1
CTB-25B13.12ENSG00000267317.1241.96700140.252400.786702.616001.78520K562FMR1
CTB-25B13.12ENSG00000267317.1439.65880198.829201.1448011.7297010.57490K562HNRNPC
CTB-25B13.12ENSG00000267317.1399.74120290.218400.461802.468801.71330K562HSPD1
CTB-25B13.12ENSG00000267317.1153.60110279.58580-0.864105.492604.24260K562KIF1C
CTB-25B13.12ENSG00000267317.1188.21990109.956700.775402.883102.02420K562MAGOH
CTB-25B13.12ENSG00000267317.1197.88420109.746500.850404.795003.54530K562MATR3
CTB-25B13.12ENSG00000267317.1202.07830313.20300-0.632204.019302.88870K562MBNL1
CTB-25B13.12ENSG00000267317.1225.74150128.408100.813802.808801.92510K562METAP2
CTB-25B13.12ENSG00000267317.1109.44500219.53030-1.004204.622503.38960K562NAA15
CTB-25B13.12ENSG00000267317.1360.30050257.417200.485002.763601.96240K562POLR2G
CTB-25B13.12ENSG00000267317.1327.78080243.035200.431502.079901.37200K562PPIG
CTB-25B13.12ENSG00000267317.1168.96030106.823500.661402.951202.26760K562PTBP1
CTB-25B13.12ENSG00000267317.182.40030261.29920-1.6650013.2215012.08020K562PUS1
CTB-25B13.12ENSG00000267317.1114.13030254.55160-1.157308.919207.88030K562RBM15
CTB-25B13.12ENSG00000267317.1176.26670102.477300.782403.745802.75490K562RBM22
CTB-25B13.12ENSG00000267317.1177.87000107.830100.722003.172001.99200K562NELFE
CTB-25B13.12ENSG00000267317.1249.51220151.012000.724303.265602.37630K562RPS19
CTB-25B13.12ENSG00000267317.1209.56080115.673000.857203.511702.37180K562RPS3
CTB-25B13.12ENSG00000267317.133.6199067.95150-1.015202.605501.77840K562SF3B4
CTB-25B13.12ENSG00000267317.1181.00040105.997000.771903.541102.73720K562TARDBP
CTB-25B13.12ENSG00000267317.1172.50010102.240700.754503.340502.42980K562TIA1
CTB-25B13.12ENSG00000267317.122.1644063.35930-1.515303.858502.52380K562U2AF1
CTB-25B13.12ENSG00000267317.116.5823065.40800-1.979806.287405.08360K562U2AF2
CTB-25B13.12ENSG00000267317.1514.60580370.841900.472603.286801.74370K562UBE2L3
CTB-25B13.12ENSG00000267317.1464.84230278.775600.737507.602906.48520K562UPF1
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for CTB-25B13.12 is not available on ENCORE database.






No RBPs affect the alternative splcing events of CTB-25B13.12 on ENCORE database.





The Knockdown/knockout RNA-Seq assay for CTB-25B13.12 is not avaliable on ENCORE database.