CNPPD1

General Information

Gene Name       : CNPPD1
Gene ID             : ENSG00000115649.15
Essential Gene : No

Functions

Localization

Domains (AlphaFold: CNPPD1)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878CNPPD1ENSG00000115649.1510.8221.7316.27ENCSR000AEF
HepG2CNPPD1ENSG00000115649.1528.4218.5823.50ENCSR985KAT
K562CNPPD1ENSG00000115649.1527.4520.4623.95ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for CNPPD1 is not avaliable on ENCORE database.



Proteins bound to RNA
  • CNPPD1 RNA is bound by 12 proteins.  







eCLIP assay for CNPPD1 is not avaliable on ENCORE database.





12 proteins are bound to CNPPD1 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr2220036937220037013-3'-UTR,intron-Distal4.305935.64093HepG2UPF1
chr2220037060220037161-3'-UTR,intron-Distal4.2045616.19422HepG2UPF1
chr2220037161220037259-3'-UTR,intron-Distal5.1177517.14784HepG2UPF1
chr2220036903220037006-3'-UTR,intron-Distal3.793445.63905HepG2AKAP1
chr2220036950220037001-3'-UTR,intron-Distal4.699655.50419HepG2LARP4
chr2220037110220037180-3'-UTR,intron-Distal3.664184.63013K562DDX6
chr2220036863220036949-3'-UTR,intron-Distal,intron-Proximal5.5213618.93168K562UPF1
chr2220037110220037174-3'-UTR,intron-Distal4.158888.00438HepG2DDX55
chr2220037070220037171-3'-UTR,intron-Distal5.4490520.44698K562UPF1
chr2220036835220036937-3'-UTR,intron-Distal,intron-Proximal4.455636.47490HepG2UPF1
chr2220036643220036813-3'-UTR,intron-Distal,intron-Proximal4.4431228.50018K562UPF1
chr2220036936220037005-3'-UTR,intron-Distal3.364205.18092K562DDX6
chr2220037034220037219-3'-UTR,intron-Distal4.6226917.23165HepG2AKAP1
chr2220036651220036715-3'-UTR,intron-Distal3.596073.59803HepG2PTBP1
chr2220036836220036992-3'-UTR,intron-Distal,intron-Proximal3.343563.52775K562FAM120A
chr2220036949220037003-3'-UTR,intron-Distal4.8926125.91418K562UPF1
chr2220036659220036780-3'-UTR,intron-Distal4.2766713.79162HepG2AKAP1
chr2220036667220036778-3'-UTR,intron-Distal5.0486516.56087HepG2UPF1
chr2220037433220037520-CDS,intron-Distal,intron-Proximal3.715304.59413K562PCBP1
chr2220038014220038114-CDS,intron-Distal,intron-Proximal6.0692515.26202HepG2PRPF8
chr2220038805220038921-CDS,intron-Distal,intron-Proximal4.272783.93614HepG2AQR
chr2220038142220038173-CDS,intron-Distal3.434906.82013HepG2PPIG
chr2220039500220039574-CDS,intron-Distal4.0239010.14097HepG2PPIG
chr2220038866220038902-CDS,intron-Distal,intron-Proximal3.928468.12130HepG2PPIG
chr2220041415220041506-CDS,intron-Distal,intron-Proximal3.748078.70001HepG2PRPF8
chr2220038002220038087-CDS,intron-Distal,intron-Proximal4.604434.28193HepG2AQR
chr2220037810220037873-CDS,intron-Distal4.853345.17615K562AQR
chr2220038084220038142-CDS,intron-Distal3.369257.72793HepG2PPIG
chr2220038173220038190-CDS,intron-Distal,intron-Proximal3.620657.91657HepG2PPIG
chr2220040999220041049-CDS,intron-Distal4.135665.80295HepG2PPIG
chr2220040396220040452-intron-Distal,intron-Proximal4.501244.82767HepG2SF3B4
chr2220041443220041471-intron-Distal,intron-Proximal4.225574.90219HepG2AQR
chr2220041431220041482-intron-Distal,intron-Proximal4.066315.97994K562AQR
chr2220037897220037982-intron-Distal,intron-Proximal4.624755.68078HepG2AQR
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for CNPPD1 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for CNPPD1 is not available on ENCORE database.

  • 57 RBPs can affect the levels of CNPPD1.  








The Knockdown/knockout RNA-Seq assay for CNPPD1 is not available on ENCORE database.





57 RBPs can affect the gene expression of CNPPD1 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
CNPPD1ENSG00000115649.111038.57380788.109500.398004.698103.71970HepG2AKAP8L
CNPPD1ENSG00000115649.11818.00630627.176600.383102.624502.03970HepG2BOP1
CNPPD1ENSG00000115649.11398.06380523.64040-0.395602.442901.71500HepG2CALR
CNPPD1ENSG00000115649.11946.26920721.949700.390302.813901.69920HepG2CPSF7
CNPPD1ENSG00000115649.111088.18770922.996500.237402.171001.59070HepG2CELF1
CNPPD1ENSG00000115649.11853.77840725.493800.234802.030401.30600HepG2DDX19B
CNPPD1ENSG00000115649.11734.43180573.474300.356802.352001.71930HepG2DDX21
CNPPD1ENSG00000115649.111578.647601140.730400.468603.419202.74060HepG2DDX6
CNPPD1ENSG00000115649.11712.82080552.403000.367703.089302.35040HepG2DNAJC21
CNPPD1ENSG00000115649.11676.37010547.518200.304802.657102.01620HepG2DNAJC2
CNPPD1ENSG00000115649.11901.747601179.75360-0.387701.968901.38160HepG2EIF4B
CNPPD1ENSG00000115649.11568.13290787.63440-0.471303.803902.89090HepG2FUBP3
CNPPD1ENSG00000115649.11955.76490685.469700.479503.473302.32410HepG2GNB2L1
CNPPD1ENSG00000115649.11897.72650620.330400.533104.687203.80050HepG2HNRNPC
CNPPD1ENSG00000115649.11909.24520744.641400.288001.957001.34690HepG2HNRNPF
CNPPD1ENSG00000115649.11924.218901148.81810-0.313802.071401.46140HepG2HNRNPK
CNPPD1ENSG00000115649.111151.94610903.842700.349805.115204.22210HepG2HNRNPL
CNPPD1ENSG00000115649.11940.63710733.247000.359202.587601.88780HepG2IGF2BP1
CNPPD1ENSG00000115649.111292.54430943.059700.454702.030701.32800HepG2LARP4
CNPPD1ENSG00000115649.111301.71790983.953700.403704.852303.84610HepG2NOL12
CNPPD1ENSG00000115649.11422.58390552.29360-0.386202.152201.48980HepG2NSUN2
CNPPD1ENSG00000115649.11827.366001120.79200-0.437903.145602.37820HepG2PABPC4
CNPPD1ENSG00000115649.111402.36240996.417300.492903.778102.99940HepG2PUM2
CNPPD1ENSG00000115649.11742.968901197.91600-0.6892010.661709.55130HepG2QKI
CNPPD1ENSG00000115649.111039.49580814.656000.351503.033102.13760HepG2RBM15
CNPPD1ENSG00000115649.111051.349701230.95460-0.227501.960101.48740HepG2NELFE
CNPPD1ENSG00000115649.11972.214101146.45530-0.237802.082101.53720HepG2RECQL
CNPPD1ENSG00000115649.111039.06380802.344000.372902.423101.77680HepG2RPLP0
CNPPD1ENSG00000115649.11690.74530454.944000.602405.373204.54960HepG2RPS19
CNPPD1ENSG00000115649.11893.438501151.57400-0.366204.149303.44860HepG2SF3B4
CNPPD1ENSG00000115649.11838.48440552.482800.601804.012502.84190HepG2SMNDC1
CNPPD1ENSG00000115649.112075.327401478.028600.4896010.328309.52720HepG2SRFBP1
CNPPD1ENSG00000115649.11897.799701201.98830-0.421005.529404.91880HepG2SRSF1
CNPPD1ENSG00000115649.11918.16440731.627700.327502.467401.80590HepG2SRSF7
CNPPD1ENSG00000115649.111141.74000977.876700.223401.975901.49500HepG2SRSF9
CNPPD1ENSG00000115649.111020.13500598.790500.7685011.7367010.83320HepG2TIAL1
CNPPD1ENSG00000115649.111300.64680971.491900.420903.132502.24170HepG2UBE2L3
CNPPD1ENSG00000115649.11906.09390657.587300.462405.616504.81210HepG2UTP3
CNPPD1ENSG00000115649.11938.05250749.092900.324403.689703.08280HepG2ZNF622
CNPPD1ENSG00000115649.111689.08360896.968100.9130010.724709.70090K562AGGF1
CNPPD1ENSG00000115649.111146.61710933.351300.296802.076201.50770K562AKAP8L
CNPPD1ENSG00000115649.11511.98710722.69020-0.497302.950201.87830K562EIF3D
CNPPD1ENSG00000115649.11828.65610659.962200.328302.106601.36260K562FIP1L1
CNPPD1ENSG00000115649.11380.46400588.06190-0.628204.593603.07610K562FKBP4
CNPPD1ENSG00000115649.11933.62000668.451500.481905.695204.87250K562FXR1
CNPPD1ENSG00000115649.11152.03310344.93280-1.181908.730107.32930K562G3BP2
CNPPD1ENSG00000115649.111012.73010677.039400.580806.204505.34620K562HNRNPC
CNPPD1ENSG00000115649.11822.46440637.316400.367802.674901.50880K562IGF2BP3
CNPPD1ENSG00000115649.11858.45290658.262500.383003.009302.13180K562MAGOH
CNPPD1ENSG00000115649.11882.58380656.862300.426003.748502.66130K562MATR3
CNPPD1ENSG00000115649.11955.97000604.521600.661102.850601.84150K562PABPN1
CNPPD1ENSG00000115649.11949.49380749.211800.341702.259401.51930K562PPIG
CNPPD1ENSG00000115649.11876.85090639.575100.455104.303403.49210K562PTBP1
CNPPD1ENSG00000115649.11805.710201023.28440-0.344903.393102.49490K562SF3A3
CNPPD1ENSG00000115649.11805.67470627.044700.361502.676301.97970K562SRSF1
CNPPD1ENSG00000115649.11967.52780770.707100.328002.630801.83260K562SYNCRIP
CNPPD1ENSG00000115649.11183.82220338.58090-0.881203.149201.55570K562TAF15
CNPPD1ENSG00000115649.11801.84950634.507000.337602.065001.44760K562TARDBP
CNPPD1ENSG00000115649.11803.36600612.080800.392203.088502.21500K562TIA1
CNPPD1ENSG00000115649.11776.20260583.875900.410702.526101.63600K562TIAL1
CNPPD1ENSG00000115649.11187.53750345.20570-0.880307.603806.26850K562U2AF2
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for CNPPD1 is not available on ENCORE database.





5 RBPs can affect the splicing of CNPPD1 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SECNPPD1ENSG00000115649.11chr2-220038867220038929220038071220038189220039499220039628-0.054000.000660.00856excludedK562AQR
A3SSCNPPD1ENSG00000115649.11chr2-2200397092200398502200397092200398302200403122200403940.055000.000010.00006longerK562AQR
RICNPPD1ENSG00000115649.11chr2-2200394992200398302200394992200396282200397092200398300.190000.000000.00002includedK562PUS1
RICNPPD1ENSG00000115649.11chr2-2200394992200398302200394992200396282200397092200398300.172000.000530.00525includedHepG2U2AF2
RICNPPD1ENSG00000115649.11chr2-2200394992200398302200394992200396282200397092200398300.150000.000030.00059includedK562RBM15
RICNPPD1ENSG00000115649.11chr2-2200394992200398302200394992200396282200397092200398300.067000.004230.06465includedK562U2AF1

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for CNPPD1 is not avaliable on ENCORE database.