CIB2

General Information

Gene Name       : CIB2
Gene ID             : ENSG00000136425.13
Essential Gene : No

Functions

Localization

Domains (AlphaFold: CIB2)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878CIB2ENSG00000136425.137.405.356.38ENCSR000AEF
HepG2CIB2ENSG00000136425.136.163.274.71ENCSR985KAT
K562CIB2ENSG00000136425.1319.7321.9820.86ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for CIB2 is not avaliable on ENCORE database.



Proteins bound to RNA
  • CIB2 RNA is bound by 4 proteins.  







eCLIP assay for CIB2 is not avaliable on ENCORE database.





4 proteins are bound to CIB2 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr157839731578397426-3'-UTR,intron-Distal,intron-Proximal4.065683.39506K562IGF2BP2
chr157839709678397238-3'-UTR,intron-Distal3.911466.37770K562PCBP1
chr157839757178397619-3'-UTR,intron-Distal,intron-Proximal3.406783.86052K562YBX3
chr157839765378397675-3'-UTR,CDS,intron-Distal3.869217.08557K562LIN28B
chr157839807878398139-3'-UTR,CDS,intron-Distal,intron-Proximal4.4030011.02601K562LIN28B
chr157841607078416081-5'-UTR,CDS,intron-Distal3.688085.15749K562YBX3
chr157842350678423521-5'-UTR,CDS,intron-Distal3.196624.97511K562YBX3
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for CIB2 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for CIB2 is not available on ENCORE database.

  • 67 RBPs can affect the levels of CIB2.  








The Knockdown/knockout RNA-Seq assay for CIB2 is not available on ENCORE database.





67 RBPs can affect the gene expression of CIB2 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
CIB2ENSG00000136425.883.4728035.781101.222003.563302.38840HepG2AKAP8
CIB2ENSG00000136425.8125.9721056.189001.164604.457503.47070HepG2ASCC1
CIB2ENSG00000136425.816.5846047.26160-1.510803.024201.55630HepG2ATP5C1
CIB2ENSG00000136425.895.1361055.903600.767001.888901.36900HepG2DDX6
CIB2ENSG00000136425.8130.5519053.714201.281105.115504.32380HepG2EIF2S1
CIB2ENSG00000136425.825.2963055.17060-1.125002.459601.71810HepG2FUBP3
CIB2ENSG00000136425.8111.8885055.562601.009803.392802.65960HepG2G3BP1
CIB2ENSG00000136425.816.5652044.75900-1.434003.006202.30700HepG2HNRNPL
CIB2ENSG00000136425.823.0403059.94000-1.379403.169802.46780HepG2MAGOH
CIB2ENSG00000136425.829.8873056.83260-0.927201.970401.44440HepG2PCBP1
CIB2ENSG00000136425.826.1191057.83190-1.146802.589002.05680HepG2PTBP1
CIB2ENSG00000136425.8110.2055049.325101.159704.199303.38230HepG2PUM2
CIB2ENSG00000136425.810.5256032.95560-1.646602.060101.44400HepG2RAVER1
CIB2ENSG00000136425.8113.1674043.312801.385506.065905.37200HepG2RBM22
CIB2ENSG00000136425.85.7343021.40370-1.900202.024901.34230HepG2RRP9
CIB2ENSG00000136425.823.0117051.94700-1.174702.478301.84060HepG2SF3A3
CIB2ENSG00000136425.833.8727062.84380-0.891601.833401.42600HepG2SRSF1
CIB2ENSG00000136425.897.3064056.491600.784402.206401.69580HepG2TAF15
CIB2ENSG00000136425.8106.2598038.127101.478604.444903.11700HepG2TBRG4
CIB2ENSG00000136425.818.5417045.26130-1.287502.324501.74380HepG2U2AF1
CIB2ENSG00000136425.818.2592048.07330-1.396602.049601.33500HepG2UBE2L3
CIB2ENSG00000136425.825.2142050.66710-1.006802.127301.62960HepG2ZNF622
CIB2ENSG00000136425.8217.93620336.45040-0.626503.703002.31830K562AARS
CIB2ENSG00000136425.8406.73810291.582600.480102.687501.48740K562ABCF1
CIB2ENSG00000136425.8934.41080465.497401.0052021.0733019.62230K562AGGF1
CIB2ENSG00000136425.8681.69000511.527900.414203.066402.01830K562AKAP8
CIB2ENSG00000136425.8803.79890484.375200.730608.253607.06530K562AKAP8L
CIB2ENSG00000136425.8693.64420508.233900.448604.241603.08540K562ATP5C1
CIB2ENSG00000136425.8791.28080556.281600.508305.063003.42290K562CCDC124
CIB2ENSG00000136425.8526.17800412.515800.351002.336601.32730K562CPEB4
CIB2ENSG00000136425.8303.36730203.249100.577703.153802.31550K562CPSF6
CIB2ENSG00000136425.8539.60780359.890000.584304.998203.53930K562DDX3X
CIB2ENSG00000136425.8261.18480426.81490-0.708506.659205.71220K562DDX47
CIB2ENSG00000136425.8650.17540521.196800.318902.472201.65030K562DKC1
CIB2ENSG00000136425.8334.21240209.648100.672702.869902.00440K562FIP1L1
CIB2ENSG00000136425.8220.94550391.01420-0.823507.629606.69110K562FXR1
CIB2ENSG00000136425.879.13400226.44680-1.516803.859602.99240K562G3BP2
CIB2ENSG00000136425.8654.47400442.805100.563604.510803.55010K562GRSF1
CIB2ENSG00000136425.8221.30150367.93850-0.733503.969203.26930K562HNRNPC
CIB2ENSG00000136425.8128.62750264.53410-1.040302.794201.55190K562HNRNPK
CIB2ENSG00000136425.8281.32610385.73480-0.455402.623201.59740K562HNRNPL
CIB2ENSG00000136425.8254.19060172.465000.559502.172101.35130K562HNRNPM
CIB2ENSG00000136425.8364.97140479.40460-0.393502.569501.70660K562HNRNPU
CIB2ENSG00000136425.8467.78140284.201200.718805.571004.45910K562HSPD1
CIB2ENSG00000136425.8428.94700265.291700.693103.540302.32510K562IGF2BP2
CIB2ENSG00000136425.8727.13010514.028800.500304.431003.35280K562KIF1C
CIB2ENSG00000136425.8743.30570492.063700.595005.022003.43320K562MAK16
CIB2ENSG00000136425.8720.51440575.844100.323202.252501.44590K562MBNL1
CIB2ENSG00000136425.8712.06170403.626300.818906.340004.79780K562NAA15
CIB2ENSG00000136425.8525.97250395.866700.409903.455802.63090K562NSUN2
CIB2ENSG00000136425.8615.35150332.987000.885804.003402.75740K562PABPN1
CIB2ENSG00000136425.8258.31310380.30490-0.558003.003102.13710K562PCBP3
CIB2ENSG00000136425.8214.80630291.68710-0.441402.055201.36530K562POLR2G
CIB2ENSG00000136425.8456.78740238.030300.940309.044807.34180K562PPIG
CIB2ENSG00000136425.8732.89780395.826500.888603.926002.07590K562PPP1R8
CIB2ENSG00000136425.8145.84940274.12410-0.910303.840102.95740K562PRPF8
CIB2ENSG00000136425.8389.20670654.90770-0.750807.810906.43410K562PUF60
CIB2ENSG00000136425.8535.49150696.81800-0.379903.013301.89540K562PUM1
CIB2ENSG00000136425.8867.40720480.338100.852603.538402.93620K562PUS1
CIB2ENSG00000136425.8887.10200468.041300.9224015.6737014.24460K562RBM15
CIB2ENSG00000136425.8178.95030279.12870-0.641402.371901.61800K562RPS19
CIB2ENSG00000136425.8232.43920378.66720-0.704104.012102.77710K562RPS3
CIB2ENSG00000136425.8172.55880268.74320-0.639103.354401.74090K562SDAD1
CIB2ENSG00000136425.8371.19910250.641000.566502.285801.34790K562SRSF5
CIB2ENSG00000136425.8385.16810258.928000.572802.173201.45530K562TIA1
CIB2ENSG00000136425.8117.65590226.40160-0.944302.403201.65480K562U2AF2
CIB2ENSG00000136425.8536.53900419.745700.354102.545101.85460K562UPF1
CIB2ENSG00000136425.8816.63810487.042300.745503.788602.20050K562UTP18
CIB2ENSG00000136425.8264.54480373.48680-0.497503.673602.70870K562WDR43
CIB2ENSG00000136425.8625.08350490.125300.350802.202301.44300K562ZC3H8
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for CIB2 is not available on ENCORE database.





4 RBPs can affect the splicing of CIB2 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SECIB2ENSG00000136425.8chr15-7841604678416081784035067840361878423506784235770.169000.000040.01188includedK562FTO
SECIB2ENSG00000136425.8chr15-784129097841309978403506784036187841604678416081-0.079000.000240.05542excludedK562WDR3
SECIB2ENSG00000136425.8chr15-7841290978413003784035067840361878416046784160810.114000.000250.04489includedK562SRSF7
SECIB2ENSG00000136425.8chr15-7841604678416081784035067840361878423506784238860.186000.000120.00737includedK562SF3B1

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for CIB2 is not avaliable on ENCORE database.