CHST10

General Information

Gene Name       : CHST10
Gene ID             : ENSG00000115526.10
Essential Gene : No

Functions

Localization

Domains (AlphaFold: CHST10)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878CHST10ENSG00000115526.1016.9515.2816.11ENCSR000AEF
HepG2CHST10ENSG00000115526.1014.9917.0916.04ENCSR985KAT
K562CHST10ENSG00000115526.1019.6420.8020.22ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for CHST10 is not avaliable on ENCORE database.



Proteins bound to RNA
  • CHST10 RNA is bound by 3 proteins.  







eCLIP assay for CHST10 is not avaliable on ENCORE database.





3 proteins are bound to CHST10 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr2101008495101008608-3'-UTR,intron-Distal4.214554.84422HepG2IGF2BP1
chr2101008902101008954-3'-UTR,intron-Distal4.010183.31330K562UPF1
chr2101033903101033985-5'-UTR,intron-Distal,intron-Proximal5.2479711.78230HepG2DDX3X
chr2101033985101034033-5'-UTR,intron-Distal,intron-Proximal3.042503.38145HepG2DDX3X
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for CHST10 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for CHST10 is not available on ENCORE database.

  • 54 RBPs can affect the levels of CHST10.  








The Knockdown/knockout RNA-Seq assay for CHST10 is not available on ENCORE database.





54 RBPs can affect the gene expression of CHST10 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
CHST10ENSG00000115526.6427.70650284.204800.589605.290004.50250HepG2ACO1
CHST10ENSG00000115526.6375.27740284.087500.401502.645801.99150HepG2CKAP4
CHST10ENSG00000115526.6400.25910174.440601.198107.904806.62200HepG2CNOT7
CHST10ENSG00000115526.6585.92970453.285900.370202.914902.25780HepG2CELF1
CHST10ENSG00000115526.6345.59000262.823200.394902.597601.78660HepG2DDX19B
CHST10ENSG00000115526.6625.66680410.300600.608604.235503.47460HepG2DDX3X
CHST10ENSG00000115526.6187.15950352.54300-0.913505.720804.86020HepG2DDX6
CHST10ENSG00000115526.6368.55010258.044800.514102.662001.77400HepG2EIF3D
CHST10ENSG00000115526.6533.80330374.397200.511602.903202.24870HepG2EIF4A3
CHST10ENSG00000115526.6376.41850480.83850-0.353202.155401.40160HepG2EIF4G1
CHST10ENSG00000115526.6367.44990277.669600.404102.126201.39570HepG2EWSR1
CHST10ENSG00000115526.6574.37080359.328800.676604.143003.21680HepG2FIP1L1
CHST10ENSG00000115526.6479.04330360.880700.408501.906601.36900HepG2GPKOW
CHST10ENSG00000115526.6343.64740161.461501.089607.007305.24470HepG2GRSF1
CHST10ENSG00000115526.6425.60360293.335300.536903.150102.46700HepG2HNRNPA1
CHST10ENSG00000115526.6499.51140326.293500.614202.930302.21870HepG2HNRNPC
CHST10ENSG00000115526.6362.58820486.28470-0.423503.242302.47130HepG2HNRNPF
CHST10ENSG00000115526.6369.15060247.894600.574403.546702.47960HepG2HNRNPM
CHST10ENSG00000115526.6433.00400324.135300.417703.056602.42220HepG2HNRNPU
CHST10ENSG00000115526.6401.53410242.690100.726304.175402.65790HepG2HSPD1
CHST10ENSG00000115526.6318.45960478.85110-0.588504.683903.76440HepG2IGF2BP1
CHST10ENSG00000115526.6426.78610242.483800.815505.015903.33270HepG2KRR1
CHST10ENSG00000115526.6749.29200509.730000.555703.412802.48990HepG2LARP4
CHST10ENSG00000115526.6435.99750270.072100.690903.311202.16160HepG2METAP2
CHST10ENSG00000115526.697.21930159.40570-0.713402.211801.43380HepG2PABPC1
CHST10ENSG00000115526.6416.11640320.823200.375102.367001.57820HepG2PARN
CHST10ENSG00000115526.6406.36820235.684400.785805.203802.71820HepG2PPIG
CHST10ENSG00000115526.6373.22670289.100700.368402.121301.46900HepG2PPIL4
CHST10ENSG00000115526.6470.55170356.134400.401802.908602.11800HepG2PRPF4
CHST10ENSG00000115526.6670.53750489.730400.453205.198604.43770HepG2PUM1
CHST10ENSG00000115526.6795.11630495.683900.681608.039907.26440HepG2RBM22
CHST10ENSG00000115526.6515.64670357.774000.527203.131002.07250HepG2RBM27
CHST10ENSG00000115526.6320.61420523.85540-0.708306.146505.18510HepG2RPLP0
CHST10ENSG00000115526.6431.03740251.083200.779506.353105.46290HepG2RPS19
CHST10ENSG00000115526.6435.22130336.602100.370602.541401.92040HepG2SMN1
CHST10ENSG00000115526.6395.89160486.09040-0.296101.833901.39500HepG2SSB
CHST10ENSG00000115526.6396.57180241.764000.713904.648703.02840HepG2SSRP1
CHST10ENSG00000115526.6638.28560518.023800.301102.463001.86950HepG2SUCLG1
CHST10ENSG00000115526.6404.55970244.796700.724704.089702.46940HepG2SUGP2
CHST10ENSG00000115526.6218.76490357.75350-0.709603.959803.17340HepG2SUPV3L1
CHST10ENSG00000115526.6221.66900346.17900-0.643102.378901.85230HepG2TAF15
CHST10ENSG00000115526.6650.31480307.358201.0811011.4750010.16830HepG2U2AF1
CHST10ENSG00000115526.6394.96300213.549400.887002.196701.32950HepG2U2AF2
CHST10ENSG00000115526.6335.93810477.09120-0.506102.321201.55950HepG2UBE2L3
CHST10ENSG00000115526.6548.16240340.989000.684807.413006.50990HepG2UTP3
CHST10ENSG00000115526.6304.91850388.43900-0.349302.228601.72280HepG2ZNF622
CHST10ENSG00000115526.6471.00510595.59390-0.338602.507501.59590K562BCLAF1
CHST10ENSG00000115526.6987.45420787.724400.325903.215702.52130K562DDX47
CHST10ENSG00000115526.61213.59840956.100600.344003.921002.80440K562EIF4G2
CHST10ENSG00000115526.6553.79310368.982600.585705.484504.67260K562FXR1
CHST10ENSG00000115526.6471.11630697.32210-0.565704.083103.07150K562PCBP3
CHST10ENSG00000115526.61420.596001109.469300.356503.894702.60940K562PUM1
CHST10ENSG00000115526.6445.68980655.94420-0.557504.044603.40670K562PUS1
CHST10ENSG00000115526.6703.45390536.499600.390802.981402.12520K562SYNCRIP
CHST10ENSG00000115526.6531.62730700.99870-0.399003.868103.03060K562UPF1
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for CHST10 is not available on ENCORE database.





1 RBPs can affect the splicing of CHST10 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
A3SSCHST10ENSG00000115526.6chr2-1010190251010191461010190251010191171010230371010231960.151000.000230.00183longerK562AQR
A3SSCHST10ENSG00000115526.6chr2-1010230371010231961010230371010231691010315021010315730.237000.000020.00015longerK562AQR

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for CHST10 is not avaliable on ENCORE database.