CDRT4

General Information

Gene Name       : CDRT4
Gene ID             : ENSG00000239704.10
Essential Gene : No

Functions

Localization

Domains (AlphaFold: CDRT4)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878CDRT4ENSG00000239704.100.680.420.55ENCSR000AEF
HepG2CDRT4ENSG00000239704.102.6911.026.85ENCSR985KAT
K562CDRT4ENSG00000239704.103.222.813.02ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for CDRT4 is not avaliable on ENCORE database.



Proteins bound to RNA
  • CDRT4 RNA is bound by 32 proteins.  







eCLIP assay for CDRT4 is not avaliable on ENCORE database.





32 proteins are bound to CDRT4 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr171534043915340495-3'-UTR,intron-Distal4.859946.07680HepG2LIN28B
chr171534102415341062-3'-UTR,intron-Distal,intron-Proximal3.107204.23325HepG2BCLAF1
chr171534055515340640-3'-UTR,intron-Distal3.540824.25221HepG2LSM11
chr171534054615340597-3'-UTR,intron-Distal3.689094.49013HepG2EIF3H
chr171534352115343573-3'-UTR,CDS,intron-Distal,intron-Proximal3.650844.51739HepG2BCLAF1
chr171540650115406554-5'-UTR,CDS,intron-Distal,intron-Proximal3.965476.44734K562U2AF1
chr171540646215406556-5'-UTR,CDS,intron-Distal,intron-Proximal4.108297.25163K562U2AF2
chr171540647515406556-5'-UTR,CDS,intron-Distal,intron-Proximal4.4593920.44056HepG2U2AF2
chr171534124915341416-3'-UTR,CDS,intron-Distal,intron-Proximal3.102985.42438HepG2ZNF800
chr171538110715381169-intron-Distal4.216584.24441HepG2ILF3
chr171538805415388100-intron-Distal3.681925.78794HepG2SUGP2
chr171537547915375554-intron-Distal3.584186.22956HepG2HNRNPL
chr171537859115378607-intron-Distal4.297878.21761HepG2PTBP1
chr171538734515387389-intron-Distal3.504573.84025HepG2SUGP2
chr171536888015369056-intron-Distal4.848075.71021K562TARDBP
chr171538766415387713-intron-Distal3.283254.89395HepG2SUGP2
chr171538807715388214-intron-Distal3.616559.18037HepG2HNRNPL
chr171539684515396969-intron-Distal4.505125.90542HepG2PRPF4
chr171538615215386210-intron-Distal3.553544.84410HepG2SUGP2
chr171536845115368557-intron-Distal4.443303.06243HepG2SRSF7
chr171536821215368277-intron-Distal3.558884.04775HepG2STAU2
chr171536808415368159-intron-Distal3.550965.39685HepG2CSTF2T
chr171536928915369378-intron-Distal3.787704.74917HepG2PCBP2
chr171537855815378591-intron-Distal5.218037.79427HepG2PTBP1
chr171536916715369268-intron-Distal3.749024.49607HepG2STAU2
chr171536414015364209-intron-Distal4.062853.63902HepG2CSTF2T
chr171538687215386900-intron-Distal4.394453.84389HepG2SUGP2
chr171539663815396725-intron-Distal4.049104.35952HepG2PRPF4
chr171536880015368867-intron-Distal5.022826.15718HepG2FUBP3
chr171538707915387153-intron-Distal4.883597.34531HepG2SUGP2
chr171539077315390872-intron-Distal3.178253.54222HepG2TAF15
chr171538958915389702-intron-Distal4.7269621.79837HepG2QKI
chr171540594115406009-3'-UTR,intron-Distal4.716874.39097HepG2HNRNPUL1
chr171538810015388183-intron-Distal4.185058.66162HepG2SUGP2
chr171536812015368302-intron-Distal3.731865.14628K562TARDBP
chr171536866115368698-intron-Distal3.691334.59124HepG2FUBP3
chr171536787215367998-intron-Distal5.9643812.78069K562EIF4G2
chr171537542915375479-intron-Distal5.540868.04631HepG2HNRNPL
chr171537960415379714-intron-Distal4.963266.10900HepG2HNRNPL
chr171536849315368627-intron-Distal5.777879.27187HepG2FUBP3
chr171538708015387138-intron-Distal3.224213.34056HepG2MATR3
chr171539368015393804-intron-Distal3.848693.22483K562SAFB2
chr171538754215387570-intron-Distal3.400983.35050HepG2SUGP2
chr171539685015396955-intron-Distal4.480817.98928HepG2FAM120A
chr171535983215359905-intron-Distal3.868703.34609K562TARDBP
chr171538682415386877-intron-Distal4.8346814.03469HepG2HNRNPM
chr171537291715373016-intron-Distal4.170853.65854HepG2RBFOX2
chr171537109615371254-intron-Distal4.571564.92524K562TARDBP
chr171536862415368740-intron-Distal5.6259512.26573HepG2DKC1
chr171536787215367956-intron-Distal4.116323.31824HepG2TIAL1
chr171539686615396958-intron-Distal3.979594.02670HepG2BCCIP
chr171540593415405991-3'-UTR,intron-Distal3.091453.64792HepG2HNRNPU
chr171536891315368993-intron-Distal3.393536.11924HepG2FUBP3
chr171538806615388160-intron-Distal3.973259.26703HepG2MATR3
chr171540108215401209-intron-Distal3.668153.00349HepG2ILF3
chr171536842415368547-intron-Distal6.6444423.58874HepG2DKC1
chr171538859215388661-intron-Distal4.242218.56181HepG2SUGP2
chr171537966515379722-intron-Distal4.037523.50357HepG2QKI
chr171538798115388027-intron-Distal3.296253.69184HepG2SUGP2
chr171536785715367948-intron-Distal3.653967.20706HepG2CSTF2T
chr171538845715388510-intron-Distal3.622295.56133HepG2SUGP2
chr171538826215388308-intron-Distal3.681925.78794HepG2SUGP2
chr171537957915379665-intron-Distal3.496284.23286HepG2QKI
chr171539829015398387-intron-Distal3.567517.60928HepG2PCBP2
chr171536828915368320-intron-Distal4.483813.83835HepG2FUBP3
chr171539390515393955-intron-Distal4.706664.79708HepG2U2AF2
chr171536931315369407-intron-Distal4.061196.08987HepG2HNRNPK
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for CDRT4 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for CDRT4 is not available on ENCORE database.

  • 61 RBPs can affect the levels of CDRT4.  








The Knockdown/knockout RNA-Seq assay for CDRT4 is not available on ENCORE database.





61 RBPs can affect the gene expression of CDRT4 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
CDRT4ENSG00000239704.62.8635020.37260-2.830802.805402.27040HepG2AKAP1
CDRT4ENSG00000239704.6466.44720250.975400.894107.189106.12310HepG2CPSF6
CDRT4ENSG00000239704.683.8503012.842902.7067010.250407.30160HepG2CSTF2T
CDRT4ENSG00000239704.624.23460213.53350-3.139302.257601.66710HepG2CELF1
CDRT4ENSG00000239704.6364.99590212.224900.782202.584901.63580HepG2DHX30
CDRT4ENSG00000239704.643.2904016.110701.425902.412701.85730HepG2EIF2S1
CDRT4ENSG00000239704.617.55250117.98330-2.748804.511602.56150HepG2GTF2F1
CDRT4ENSG00000239704.618.13100189.63290-3.386703.880102.23700HepG2HNRNPA0
CDRT4ENSG00000239704.6110.15390247.09880-1.165605.806804.83110HepG2HNRNPC
CDRT4ENSG00000239704.628.22840194.74040-2.786302.913501.35550HepG2HNRNPD
CDRT4ENSG00000239704.627.77870208.77490-2.909902.111601.51230HepG2HNRNPL
CDRT4ENSG00000239704.6113.65870245.46370-1.110805.459104.62970HepG2HNRNPU
CDRT4ENSG00000239704.6404.87540250.729700.691206.533005.45430HepG2ILF2
CDRT4ENSG00000239704.6245.15620448.09160-0.870105.816504.60260HepG2LARP4
CDRT4ENSG00000239704.6395.17930240.738000.714904.479403.53250HepG2NSUN2
CDRT4ENSG00000239704.6263.76240182.150000.534003.062302.25400HepG2PRPF4
CDRT4ENSG00000239704.67.68110217.14230-4.821203.666202.99160HepG2PUF60
CDRT4ENSG00000239704.618.94720230.60620-3.605402.658702.07450HepG2PUM1
CDRT4ENSG00000239704.631.23940230.37550-2.882502.047801.46540HepG2PUM2
CDRT4ENSG00000239704.622.41740112.42780-2.326303.665702.57970HepG2RPS10
CDRT4ENSG00000239704.6229.30580124.490500.881103.346601.66500HepG2RTF1
CDRT4ENSG00000239704.6540.90680218.584801.3071023.5955021.96190HepG2SAFB2
CDRT4ENSG00000239704.6238.71560489.95610-1.037407.886906.70750HepG2SF3A3
CDRT4ENSG00000239704.622.86990208.41100-3.187902.281201.63430HepG2SLBP
CDRT4ENSG00000239704.6169.17930254.88740-0.591302.245901.65690HepG2SMN1
CDRT4ENSG00000239704.620.54000111.16080-2.436103.863801.95310HepG2SND1
CDRT4ENSG00000239704.6159.04380289.16470-0.862502.597701.63170HepG2SRSF3
CDRT4ENSG00000239704.613.85390214.51630-3.952702.924902.28230HepG2SRSF5
CDRT4ENSG00000239704.6228.5745041.482602.462002.574002.07400HepG2SSB
CDRT4ENSG00000239704.6185.1182011.584803.998005.330104.59390HepG2TAF15
CDRT4ENSG00000239704.6439.13810264.720000.730104.517403.61960HepG2TARDBP
CDRT4ENSG00000239704.622.23220114.94030-2.370203.181901.60670HepG2TRA2A
CDRT4ENSG00000239704.6170.36620333.11550-0.967402.494401.56360HepG2U2AF2
CDRT4ENSG00000239704.6201.37490419.50720-1.0588012.1341011.01610HepG2UTP3
CDRT4ENSG00000239704.6443.80140179.761201.3037019.6402018.14020HepG2ZC3H8
CDRT4ENSG00000239704.6269.09940477.88400-0.828508.810607.97650HepG2ZNF622
CDRT4ENSG00000239704.6169.42210108.244200.646202.273001.48850K562BOP1
CDRT4ENSG00000239704.6543.88270362.347000.585805.426003.73860K562CCDC124
CDRT4ENSG00000239704.6111.20130241.42880-1.118402.414501.50500K562CELF1
CDRT4ENSG00000239704.6132.3202034.882301.923403.715501.49480K562DAZAP1
CDRT4ENSG00000239704.652.870806.525303.018209.454407.04840K562DDX27
CDRT4ENSG00000239704.696.97120196.29900-1.017404.391303.21930K562EIF4G2
CDRT4ENSG00000239704.6190.67560117.114700.703102.871402.00050K562FMR1
CDRT4ENSG00000239704.6100.8022030.219001.737903.698901.43710K562HLTF
CDRT4ENSG00000239704.63.8479028.00180-2.863403.225201.88050K562HNRNPK
CDRT4ENSG00000239704.6353.06590180.095300.971107.137405.87140K562HSPD1
CDRT4ENSG00000239704.65.5745029.48190-2.402902.944302.07740K562MAGOH
CDRT4ENSG00000239704.643.11370209.22470-2.2788018.1257015.48190K562MSI2
CDRT4ENSG00000239704.682.2517021.085601.963707.202305.25490K562NCBP2
CDRT4ENSG00000239704.677.71770214.74260-1.4663010.205807.46110K562NOL12
CDRT4ENSG00000239704.68.4531052.42020-2.632607.499904.60840K562PABPC4
CDRT4ENSG00000239704.6100.41330244.90420-1.286305.129803.66700K562PABPN1
CDRT4ENSG00000239704.645.47050201.70690-2.149303.632801.99720K562PNPT1
CDRT4ENSG00000239704.6242.68830140.695600.786403.872202.77460K562PSIP1
CDRT4ENSG00000239704.671.71490214.16850-1.578404.598903.55130K562PUF60
CDRT4ENSG00000239704.6100.72450223.19820-1.147905.519804.14470K562PUM2
CDRT4ENSG00000239704.65.0891047.03780-3.208307.789705.41900K562RBM25
CDRT4ENSG00000239704.687.15070159.72520-0.874003.223202.13380K562RPS3
CDRT4ENSG00000239704.66.3848051.57810-3.014008.887507.30540K562SF3B4
CDRT4ENSG00000239704.676.84760273.18950-1.8298010.222807.18120K562SFPQ
CDRT4ENSG00000239704.63.1664028.09080-3.149203.773302.95300K562SRSF1
CDRT4ENSG00000239704.612.3177048.75450-1.984804.220202.27020K562TAF15
CDRT4ENSG00000239704.68.0090028.41590-1.827002.265101.62080K562TARDBP
CDRT4ENSG00000239704.610.6665051.70940-2.277305.693303.38130K562TBRG4
CDRT4ENSG00000239704.65.0730048.06700-3.244107.829505.83360K562U2AF1
CDRT4ENSG00000239704.6403.16560209.569500.943804.305203.42820K562UPF1
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for CDRT4 is not available on ENCORE database.






No RBPs affect the alternative splcing events of CDRT4 on ENCORE database.





The Knockdown/knockout RNA-Seq assay for CDRT4 is not avaliable on ENCORE database.