C2CD3

General Information

Gene Name       : C2CD3
Gene ID             : ENSG00000168014.16
Essential Gene : No

Functions

Localization

Domains (AlphaFold: C2CD3)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878C2CD3ENSG00000168014.168.4514.5311.49ENCSR000AEF
HepG2C2CD3ENSG00000168014.1610.808.509.65ENCSR985KAT
K562C2CD3ENSG00000168014.1613.5413.5613.55ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for C2CD3 is not avaliable on ENCORE database.



Proteins bound to RNA
  • C2CD3 RNA is bound by 4 proteins.  







eCLIP assay for C2CD3 is not avaliable on ENCORE database.





4 proteins are bound to C2CD3 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr117384971873849796-CDS,intron-Distal,intron-Proximal5.784526.35567HepG2PRPF8
chr117381272273812788-intron-Distal4.232123.42734K562PTBP1
chr117384325173843259-intron-Distal7.0180532.18148K562NSUN2
chr117384325973843274-intron-Distal7.0180532.18148K562NSUN2
chr117384362973843802-intron-Distal,intron-Proximal3.524528.15069HepG2QKI
chr117384483873844919-intron-Distal3.952553.05187HepG2QKI
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for C2CD3 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for C2CD3 is not available on ENCORE database.

  • 63 RBPs can affect the levels of C2CD3.  








The Knockdown/knockout RNA-Seq assay for C2CD3 is not available on ENCORE database.





63 RBPs can affect the gene expression of C2CD3 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
C2CD3ENSG00000168014.12569.06260423.468600.426203.828303.13430HepG2ACO1
C2CD3ENSG00000168014.12635.38580333.252300.930907.641206.80300HepG2AKAP1
C2CD3ENSG00000168014.12307.51320423.42450-0.461503.621002.87770HepG2CKAP4
C2CD3ENSG00000168014.12194.39300453.45040-1.2220012.2295010.90090HepG2CPSF6
C2CD3ENSG00000168014.12327.67620487.93750-0.574403.972302.76870HepG2DDX5
C2CD3ENSG00000168014.12296.06900418.93110-0.500803.089702.05890HepG2DHX30
C2CD3ENSG00000168014.12298.24740434.35470-0.542404.230203.37610HepG2DNAJC21
C2CD3ENSG00000168014.12341.00150485.40210-0.509403.201902.32910HepG2EIF4G2
C2CD3ENSG00000168014.12552.92950673.45500-0.284501.926801.40580HepG2ETF1
C2CD3ENSG00000168014.12268.64100454.22600-0.757702.573601.59720HepG2FTO
C2CD3ENSG00000168014.12528.97480293.945800.847507.004705.93770HepG2FXR1
C2CD3ENSG00000168014.12388.97660272.670400.512402.622101.97380HepG2G3BP1
C2CD3ENSG00000168014.12482.78420628.04730-0.379502.663401.95860HepG2HNRNPF
C2CD3ENSG00000168014.12326.41360490.54190-0.587703.724403.00380HepG2HNRNPLL
C2CD3ENSG00000168014.12367.54680484.53810-0.398703.089302.45110HepG2HNRNPU
C2CD3ENSG00000168014.12446.44090618.45060-0.470203.751102.91850HepG2IGF2BP1
C2CD3ENSG00000168014.12417.85800294.048500.506902.647702.00620HepG2MAGOH
C2CD3ENSG00000168014.12476.70400295.692000.688904.251703.48560HepG2MATR3
C2CD3ENSG00000168014.12256.11550434.95770-0.764105.213404.20010HepG2NSUN2
C2CD3ENSG00000168014.12396.32150255.209200.634905.357604.55830HepG2PCBP1
C2CD3ENSG00000168014.12279.90650432.17020-0.626705.441904.43870HepG2PPIL4
C2CD3ENSG00000168014.12404.55040508.06070-0.328702.179801.48610HepG2PRPF4
C2CD3ENSG00000168014.12648.92690454.998100.512102.485201.32600HepG2PRPF6
C2CD3ENSG00000168014.12518.24960259.691700.9967013.3246012.30340HepG2PTBP1
C2CD3ENSG00000168014.12300.77200486.17480-0.692805.637004.82560HepG2PUF60
C2CD3ENSG00000168014.12625.94880516.096000.278302.271801.72390HepG2PUM1
C2CD3ENSG00000168014.12657.90760289.006301.1867019.4461018.26520HepG2NELFE
C2CD3ENSG00000168014.12412.97800269.180300.617404.940604.14750HepG2RECQL
C2CD3ENSG00000168014.12525.32680676.51050-0.364902.180201.56490HepG2RPLP0
C2CD3ENSG00000168014.12290.43810431.50560-0.571105.019804.19730HepG2SAFB2
C2CD3ENSG00000168014.12777.93930547.889300.505702.411001.78270HepG2SF3A3
C2CD3ENSG00000168014.12435.88720270.360500.689006.022405.20690HepG2SF3B4
C2CD3ENSG00000168014.12872.39640635.745000.456405.302604.67070HepG2SRFBP1
C2CD3ENSG00000168014.12544.57310282.202700.9483011.9812011.14540HepG2SRSF1
C2CD3ENSG00000168014.12623.63290480.026700.377503.133202.47280HepG2SRSF5
C2CD3ENSG00000168014.12463.03040617.02410-0.414203.497102.72780HepG2SRSF7
C2CD3ENSG00000168014.12317.12810229.591200.465902.946902.38110HepG2SRSF9
C2CD3ENSG00000168014.12241.39280389.21480-0.689203.608602.21080HepG2STAU1
C2CD3ENSG00000168014.12753.91550545.922700.465605.349204.53560HepG2SUCLG1
C2CD3ENSG00000168014.12381.82190253.668600.589904.370403.68990HepG2TAF15
C2CD3ENSG00000168014.12331.12580478.12080-0.530003.323802.53710HepG2TARDBP
C2CD3ENSG00000168014.12301.13190470.83880-0.644805.578404.91650HepG2TIAL1
C2CD3ENSG00000168014.12334.18990475.02680-0.507304.430803.75140HepG2TRIM56
C2CD3ENSG00000168014.12178.55400250.07540-0.486002.011301.36420HepG2UCHL5
C2CD3ENSG00000168014.12757.81530469.111400.691809.800908.78480HepG2UTP3
C2CD3ENSG00000168014.12299.60960416.71890-0.476002.233101.57610HepG2XRN2
C2CD3ENSG00000168014.12442.65640534.39030-0.271701.892301.41680HepG2ZNF622
C2CD3ENSG00000168014.12621.19480817.83620-0.396803.003901.96810K562AKAP8
C2CD3ENSG00000168014.12602.80060774.46950-0.361502.472001.85400K562AKAP8L
C2CD3ENSG00000168014.121310.474001050.011100.319602.819801.56950K562APOBEC3C
C2CD3ENSG00000168014.121358.64920925.540100.553705.979305.17290K562AQR
C2CD3ENSG00000168014.12625.62850812.58720-0.377203.421402.39680K562ATP5C1
C2CD3ENSG00000168014.12605.91720847.02860-0.483304.028502.99210K562FIP1L1
C2CD3ENSG00000168014.12683.22000452.418600.594606.649405.76890K562FXR1
C2CD3ENSG00000168014.12777.158901096.37110-0.496504.644503.66580K562GRSF1
C2CD3ENSG00000168014.12677.17630542.380900.320101.945601.43380K562HNRNPC
C2CD3ENSG00000168014.12851.561501148.42930-0.431503.635702.72790K562HSPD1
C2CD3ENSG00000168014.12608.62760821.93850-0.433503.749202.76960K562KIF1C
C2CD3ENSG00000168014.12704.93800544.347700.372902.673201.84780K562MAGOH
C2CD3ENSG00000168014.121355.48620922.581200.555004.912603.80530K562PCBP3
C2CD3ENSG00000168014.121073.22510707.655900.600707.568906.26960K562POLR2G
C2CD3ENSG00000168014.12698.91780961.50570-0.460203.791002.80930K562PPIG
C2CD3ENSG00000168014.12691.63320528.892400.386902.942802.26060K562PTBP1
C2CD3ENSG00000168014.12546.18370748.36970-0.454404.173003.46070K562RBM15
C2CD3ENSG00000168014.121147.83660863.330500.410805.723804.43880K562SRPK2
C2CD3ENSG00000168014.12833.334901042.61650-0.323202.326501.54640K562ZC3H8
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for C2CD3 is not available on ENCORE database.





4 RBPs can affect the splicing of C2CD3 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SEC2CD3ENSG00000168014.12chr11-7387244373872601738506497385087373879388738796580.158000.000420.05023includedK562FMR1
SEC2CD3ENSG00000168014.12chr11-738724437387260173850649738508737387938873879658-0.290000.000000.00004excludedK562AQR
SEC2CD3ENSG00000168014.12chr11-738724437387260173850649738508737387938873879658-0.258000.002380.06001excludedHepG2SF3A3
SEC2CD3ENSG00000168014.12chr11-738724437387260173850649738508737387938873879658-0.190000.000990.03391excludedK562UTP18
A3SSC2CD3ENSG00000168014.12chr11-7384388873844102738438887384401773844469738446020.237000.000000.00000longerK562AQR

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for C2CD3 is not avaliable on ENCORE database.