C1orf61

General Information

Gene Name       : C1orf61
Gene ID             : ENSG00000125462.16
Essential Gene : No

Functions

Localization

Domains (AlphaFold: C1orf61)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878C1orf61ENSG00000125462.160.510.930.72ENCSR000AEF
HepG2C1orf61ENSG00000125462.160.000.000.00ENCSR985KAT
K562C1orf61ENSG00000125462.161.800.941.37ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for C1orf61 is not avaliable on ENCORE database.



Proteins bound to RNA
  • C1orf61 RNA is bound by 3 proteins.  







eCLIP assay for C1orf61 is not avaliable on ENCORE database.





3 proteins are bound to C1orf61 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr1156390013156390116-CDS,intron-Distal,intron-Proximal7.0355935.62867K562DROSHA
chr1156390023156390093-CDS,intron-Distal,intron-Proximal7.1898022.53896K562DGCR8
chr1156387980156388021-intron-Distal3.972485.59743K562DROSHA
chr1156390442156390470-intron-Distal4.223354.90166K562DGCR8
chr1156390606156390683-intron-Distal5.033036.31854K562DGCR8
chr1156388652156388706-intron-Distal5.679996.00761K562DROSHA
chr1156391340156391418-intron-Distal6.297229.05894K562DGCR8
chr1156390328156390377-intron-Distal5.3694438.57797K562DROSHA
chr1156390775156390869-intron-Distal5.394909.22355K562DGCR8
chr1156387490156387660-intron-Distal,intron-Proximal7.5574424.46589K562DROSHA
chr1156390212156390303-intron-Distal,intron-Proximal7.1284218.27461K562DGCR8
chr1156387488156387647-intron-Distal,intron-Proximal4.158234.17049K562TARDBP
chr1156390207156390328-intron-Distal,intron-Proximal7.7462465.97621K562DROSHA
chr1156387462156387564-intron-Distal3.764583.52314K562DGCR8
chr1156390303156390374-intron-Distal6.8035814.03040K562DGCR8
chr1156390148156390207-intron-Distal,intron-Proximal6.5753214.41514K562DGCR8
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for C1orf61 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for C1orf61 is not available on ENCORE database.

  • 38 RBPs can affect the levels of C1orf61.  








The Knockdown/knockout RNA-Seq assay for C1orf61 is not available on ENCORE database.





38 RBPs can affect the gene expression of C1orf61 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
C1orf61ENSG00000125462.12100.17090169.81770-0.761502.558301.61910K562AKAP8
C1orf61ENSG00000125462.12133.0080078.122100.767602.854201.51520K562BCCIP
C1orf61ENSG00000125462.12101.52820181.31080-0.836603.895202.14550K562DDX19B
C1orf61ENSG00000125462.1256.63860141.22090-1.318107.470106.47010K562DDX47
C1orf61ENSG00000125462.1245.3934091.73190-1.014902.794201.50810K562EEF2
C1orf61ENSG00000125462.1248.97910123.64400-1.336006.539105.50220K562EIF2S2
C1orf61ENSG00000125462.1227.0340063.30110-1.227502.316601.40530K562EIF3A
C1orf61ENSG00000125462.1238.6533094.90180-1.295804.283802.96050K562EIF3D
C1orf61ENSG00000125462.1250.3948087.12180-0.789802.209001.47260K562EIF4A3
C1orf61ENSG00000125462.1249.5059090.60190-0.871902.639402.04610K562FXR1
C1orf61ENSG00000125462.1241.0459077.89600-0.924302.141501.53080K562G3BP2
C1orf61ENSG00000125462.12105.85710170.64370-0.688902.705901.89120K562KIF1C
C1orf61ENSG00000125462.12120.9240062.578200.950302.840001.89110K562KRR1
C1orf61ENSG00000125462.12104.6887057.469700.865102.680901.31940K562LARP7
C1orf61ENSG00000125462.12118.9473060.150900.983603.364501.71220K562LIN28B
C1orf61ENSG00000125462.12301.37990206.114300.548002.714401.59770K562MSI2
C1orf61ENSG00000125462.12305.34270183.167900.737203.960302.96520K562PCBP3
C1orf61ENSG00000125462.12253.52810140.499000.851505.344804.23340K562POLR2G
C1orf61ENSG00000125462.1244.1433086.24980-0.966302.422301.71890K562PRPF8
C1orf61ENSG00000125462.12148.4903053.110101.483207.590105.94890K562PSIP1
C1orf61ENSG00000125462.1282.49000159.45680-0.950903.902203.27290K562PUS1
C1orf61ENSG00000125462.1297.92430155.37850-0.666002.428801.86660K562RBM15
C1orf61ENSG00000125462.1230.4036087.85730-1.530904.804903.72630K562RPS19
C1orf61ENSG00000125462.1264.53100118.99530-0.882802.566601.60570K562RPS3
C1orf61ENSG00000125462.12219.73640120.510900.866503.329201.63830K562SBDS
C1orf61ENSG00000125462.12117.9630068.548000.783002.557001.34630K562SLBP
C1orf61ENSG00000125462.12242.42750134.305800.851905.652104.37500K562SRPK2
C1orf61ENSG00000125462.1250.8986088.82070-0.803302.180901.54460K562SRSF1
C1orf61ENSG00000125462.12199.91450109.121000.873404.218702.60950K562STAU1
C1orf61ENSG00000125462.12350.42630184.085200.928608.244805.86280K562SUCLG1
C1orf61ENSG00000125462.1231.7490083.51230-1.395304.194402.92150K562SUPV3L1
C1orf61ENSG00000125462.1286.35850140.92000-0.706502.650301.84910K562SYNCRIP
C1orf61ENSG00000125462.12138.3134089.883300.621702.096001.47420K562TARDBP
C1orf61ENSG00000125462.12175.83530106.355900.725203.033501.57100K562TRIP6
C1orf61ENSG00000125462.12161.2288078.057301.046405.782104.62170K562U2AF2
C1orf61ENSG00000125462.12373.75760237.855100.651904.271802.52960K562UBE2L3
C1orf61ENSG00000125462.12190.69100120.534900.661703.011602.10040K562WDR3
C1orf61ENSG00000125462.12333.10840210.562100.661603.104501.72800K562WRN
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for C1orf61 is not available on ENCORE database.






No RBPs affect the alternative splcing events of C1orf61 on ENCORE database.





The Knockdown/knockout RNA-Seq assay for C1orf61 is not avaliable on ENCORE database.