C17orf49

General Information

Gene Name       : C17orf49
Gene ID             : ENSG00000258315.5
Essential Gene : No

Functions

Localization

Domains (AlphaFold: C17orf49)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878C17orf49ENSG00000258315.561.99125.8393.91ENCSR000AEF
HepG2C17orf49ENSG00000258315.544.5238.0341.28ENCSR985KAT
K562C17orf49ENSG00000258315.544.4938.4341.46ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for C17orf49 is not avaliable on ENCORE database.



Proteins bound to RNA
  • C17orf49 RNA is bound by 9 proteins.  







eCLIP assay for C17orf49 is not avaliable on ENCORE database.





9 proteins are bound to C17orf49 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr1769206156920670+3'-UTR,CDS3.971773.87091K562IGF2BP2
chr1769206066920710+3'-UTR,CDS3.053263.70380HepG2LARP4
chr1769206706920800+3'-UTR3.482684.54958K562IGF2BP2
chr1769177326917835+3'-UTR,5'-UTR,intron-Distal3.071024.52597K562UPF1
chr1769176976917829+3'-UTR,5'-UTR,intron-Distal4.3486022.42988HepG2PCBP2
chr1769176996917824+3'-UTR,5'-UTR,intron-Distal5.4106711.64291HepG2PCBP1
chr1769176526917820+3'-UTR,5'-UTR,intron-Distal,intron-Proximal3.979547.81366HepG2UPF1
chr1769181286918189+5'-UTR,CDS,intron-Distal6.351198.23278HepG2DDX3X
chr1769177866917820+3'-UTR,5'-UTR,intron-Distal4.7266717.20804HepG2LARP4
chr1769178056917844+3'-UTR,5'-UTR,intron-Distal5.400768.52455K562PABPC4
chr1769198116919842+CDS,intron-Proximal3.460247.36929K562YBX3
chr1769199186919982+CDS,intron-Distal,intron-Proximal5.2665420.52075K562YBX3
chr1769198586919918+CDS,intron-Proximal3.871245.53855K562YBX3
chr1769184706918535+CDS,intron-Proximal4.999846.35567HepG2PRPF8
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for C17orf49 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for C17orf49 is not available on ENCORE database.

  • 58 RBPs can affect the levels of C17orf49.  








The Knockdown/knockout RNA-Seq assay for C17orf49 is not available on ENCORE database.





58 RBPs can affect the gene expression of C17orf49 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
C17orf49ENSG00000258315.1531.82190316.841100.747109.241508.26330HepG2ACO1
C17orf49ENSG00000258315.1858.72120375.637001.1928013.3640012.28580HepG2AKAP1
C17orf49ENSG00000258315.1159.49400224.78870-0.495101.975201.31510HepG2CALR
C17orf49ENSG00000258315.1502.39630309.103300.700604.463103.69370HepG2DDX6
C17orf49ENSG00000258315.1317.92100242.948700.387902.300801.69410HepG2DNAJC2
C17orf49ENSG00000258315.1298.23570427.12580-0.518203.840302.88380HepG2EIF4G1
C17orf49ENSG00000258315.1374.51410560.88740-0.582704.890704.13140HepG2ETF1
C17orf49ENSG00000258315.182.07730195.48530-1.252003.932102.71860HepG2FTO
C17orf49ENSG00000258315.1439.72200331.325700.408201.992501.40130HepG2FXR1
C17orf49ENSG00000258315.1126.96280221.20720-0.801003.587602.86790HepG2GPKOW
C17orf49ENSG00000258315.1403.08840275.274800.550103.138702.40550HepG2HNRNPC
C17orf49ENSG00000258315.1527.76210311.223400.761806.142005.13130HepG2HNRNPK
C17orf49ENSG00000258315.1148.41320251.53270-0.761105.088604.07380HepG2PRPF4
C17orf49ENSG00000258315.1406.61990308.697000.397402.340201.82960HepG2PTBP1
C17orf49ENSG00000258315.1326.01580434.69300-0.415102.329101.71200HepG2PUM2
C17orf49ENSG00000258315.1483.86570334.358300.533103.814403.09750HepG2QKI
C17orf49ENSG00000258315.1452.06650343.562600.395902.366101.85860HepG2NELFE
C17orf49ENSG00000258315.1230.67670368.82240-0.677104.170203.35890HepG2RPLP0
C17orf49ENSG00000258315.1254.24710426.21060-0.745303.462802.56710HepG2RPS3A
C17orf49ENSG00000258315.1389.32240241.905700.686403.515902.75220HepG2SF3A3
C17orf49ENSG00000258315.1417.04220321.420200.375602.098101.57180HepG2SF3B4
C17orf49ENSG00000258315.1131.59940232.49070-0.821003.196502.35470HepG2SNRNP70
C17orf49ENSG00000258315.1269.90930404.62270-0.584104.518503.75290HepG2SRSF5
C17orf49ENSG00000258315.1358.75380459.68420-0.357602.488001.99620HepG2SSB
C17orf49ENSG00000258315.1183.16930266.25450-0.539602.154001.54760HepG2SUPV3L1
C17orf49ENSG00000258315.1177.81770265.74420-0.579603.149302.62150HepG2TIAL1
C17orf49ENSG00000258315.1362.24280207.123500.806407.174906.28700HepG2UTP3
C17orf49ENSG00000258315.1648.83540352.060100.8819013.0777011.94140K562AGGF1
C17orf49ENSG00000258315.1639.05070386.884500.723905.548104.03810K562AKAP8
C17orf49ENSG00000258315.1640.63680366.340300.806208.809107.57210K562AKAP8L
C17orf49ENSG00000258315.1594.44090384.390200.628906.857205.32660K562ATP5C1
C17orf49ENSG00000258315.1626.43320420.712200.574205.665303.94900K562CCDC124
C17orf49ENSG00000258315.1160.99780330.64310-1.0382010.427509.25530K562DDX47
C17orf49ENSG00000258315.1547.33100394.171800.473504.221303.10680K562DKC1
C17orf49ENSG00000258315.1580.86430300.881900.9489012.9681011.58810K562EIF2S2
C17orf49ENSG00000258315.159.79510172.74830-1.530606.413304.82980K562EIF3A
C17orf49ENSG00000258315.1165.93770246.16960-0.569002.455301.48720K562EIF3D
C17orf49ENSG00000258315.1106.66050172.30190-0.691902.905402.09050K562EIF3G
C17orf49ENSG00000258315.1285.57380184.655600.628903.452002.49660K562FIP1L1
C17orf49ENSG00000258315.1261.56520350.57400-0.422502.224801.67120K562FXR1
C17orf49ENSG00000258315.160.29620215.10730-1.8349012.9073011.13840K562G3BP2
C17orf49ENSG00000258315.1310.09090421.88840-0.444202.726301.66110K562HNRNPA1
C17orf49ENSG00000258315.1326.34690467.21710-0.517704.036502.94900K562HNRNPU
C17orf49ENSG00000258315.1378.86110250.348100.597603.566502.66680K562HSPD1
C17orf49ENSG00000258315.1568.07960388.758200.547104.245803.19280K562KIF1C
C17orf49ENSG00000258315.1595.64340372.153800.678405.767704.00910K562MAK16
C17orf49ENSG00000258315.1646.79410435.510200.570503.377302.35470K562MBNL1
C17orf49ENSG00000258315.1511.45940287.895400.829003.612602.43850K562PABPN1
C17orf49ENSG00000258315.1182.40570278.50900-0.610603.075902.04490K562PCBP2
C17orf49ENSG00000258315.1186.73100304.21420-0.704103.709002.74410K562PCBP3
C17orf49ENSG00000258315.1162.25040233.33410-0.524202.345301.60790K562POLR2G
C17orf49ENSG00000258315.1299.93540209.626400.516702.632701.83550K562PPIG
C17orf49ENSG00000258315.1888.65750363.267401.2905014.5481013.34080K562PUS1
C17orf49ENSG00000258315.1600.89010353.983900.763308.143007.15490K562RBM15
C17orf49ENSG00000258315.190.28600227.91630-1.335908.406006.96700K562RPS19
C17orf49ENSG00000258315.1453.26060263.333900.783302.739101.54620K562SF1
C17orf49ENSG00000258315.1406.24080298.138100.446302.570301.88530K562SRSF1
C17orf49ENSG00000258315.1179.04050265.58060-0.568903.165201.53960K562SRSF9
C17orf49ENSG00000258315.1175.70930300.15380-0.772506.190204.97830K562WDR43
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for C17orf49 is not available on ENCORE database.






No RBPs affect the alternative splcing events of C17orf49 on ENCORE database.





The Knockdown/knockout RNA-Seq assay for C17orf49 is not avaliable on ENCORE database.